Clone Name | bart48e07 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 272 bits (137), Expect = 1e-69 Identities = 239/273 (87%) Strand = Plus / Minus Query: 81 cctccttccttgttgaatgcctaggatggctgatcgtcgtcctcttttctttgtacgtct 140 |||||||||| ||||| ||||| |||||| ||||||||||||| || ||||| ||| Sbjct: 10688670 cctccttcctcgttgagtgcctgtcatggcttgtcgtcgtcctcttctccctgtacatct 10688611 Query: 141 tccagttgctccgtgacgctcgccggcgtcttccccctggcccctggccgccgaagccgc 200 ||||| | ||||| ||||| ||||| || || ||||| || ||||||||||||||||||| Sbjct: 10688610 tccagcttctccgcgacgcccgccgccgcctccccccgggtccctggccgccgaagccgc 10688551 Query: 201 tcatcggcgacctcctcgacctcggggaggatggccagcagcaccgcgcgttccagcgcc 260 || |||||||||||||||||||||| ||||| ||| ||||||||||| |||||| |||| Sbjct: 10688550 tcgtcggcgacctcctcgacctcggcgaggacggcaagcagcaccgcacgttcctccgcc 10688491 Query: 261 tggccgaccgctatggtggcctcatgtgcctccgcttcggcatggtgccccacgtgatca 320 | |||| |||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct: 10688490 tcgccggccgctacggcggcctcatgtgcctccgcttcggcatggtgccccacgtgatcg 10688431 Query: 321 tctccacgccggacgccctgcgcgcggtcttcg 353 ||||||| |||||||||||||||||||| |||| Sbjct: 10688430 tctccaccccggacgccctgcgcgcggtgttcg 10688398 Score = 268 bits (135), Expect = 2e-68 Identities = 201/221 (90%), Gaps = 4/221 (1%) Strand = Plus / Minus Query: 352 cggcggcggggaaggcaagaaggtggacaacatcgggggcctcccgagcctggacgtcct 411 ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||| || Sbjct: 10688375 cggcggcggggaaggcaagaaggtggatggcatcgcgggcctcccgagcctcgacgtgct 10688316 Query: 412 cagcgccatgggccacagcgcccacaccatcttcgcgctcccgagccaggacggcaagtg 471 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 10688315 cagcgccatgggccaccgcgcgcacaccatcttcgcgctcccgagccaggacggcaagtg 10688256 Query: 472 gcgcgcgctccgcaagttcgccgccgcagagatgctcgcgcccaggcggatc---tccgc 528 ||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| Sbjct: 10688255 gcgcgcgctccgcaagttcgccgccgccgagatgctcgcgccgcggcggatctcgtccgc 10688196 Query: 529 cggggccggggcgctgctgcagacc-agatcgttgaggcgc 568 | |||||| |||| |||||||||| ||||||| ||||||| Sbjct: 10688195 ggcggccggcgcgcagctgcagaccaagatcgtggaggcgc 10688155
>dbj|AP003522.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0036B02 Length = 168253 Score = 272 bits (137), Expect = 1e-69 Identities = 239/273 (87%) Strand = Plus / Minus Query: 81 cctccttccttgttgaatgcctaggatggctgatcgtcgtcctcttttctttgtacgtct 140 |||||||||| ||||| ||||| |||||| ||||||||||||| || ||||| ||| Sbjct: 41733 cctccttcctcgttgagtgcctgtcatggcttgtcgtcgtcctcttctccctgtacatct 41674 Query: 141 tccagttgctccgtgacgctcgccggcgtcttccccctggcccctggccgccgaagccgc 200 ||||| | ||||| ||||| ||||| || || ||||| || ||||||||||||||||||| Sbjct: 41673 tccagcttctccgcgacgcccgccgccgcctccccccgggtccctggccgccgaagccgc 41614 Query: 201 tcatcggcgacctcctcgacctcggggaggatggccagcagcaccgcgcgttccagcgcc 260 || |||||||||||||||||||||| ||||| ||| ||||||||||| |||||| |||| Sbjct: 41613 tcgtcggcgacctcctcgacctcggcgaggacggcaagcagcaccgcacgttcctccgcc 41554 Query: 261 tggccgaccgctatggtggcctcatgtgcctccgcttcggcatggtgccccacgtgatca 320 | |||| |||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct: 41553 tcgccggccgctacggcggcctcatgtgcctccgcttcggcatggtgccccacgtgatcg 41494 Query: 321 tctccacgccggacgccctgcgcgcggtcttcg 353 ||||||| |||||||||||||||||||| |||| Sbjct: 41493 tctccaccccggacgccctgcgcgcggtgttcg 41461 Score = 268 bits (135), Expect = 2e-68 Identities = 201/221 (90%), Gaps = 4/221 (1%) Strand = Plus / Minus Query: 352 cggcggcggggaaggcaagaaggtggacaacatcgggggcctcccgagcctggacgtcct 411 ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||| || Sbjct: 41438 cggcggcggggaaggcaagaaggtggatggcatcgcgggcctcccgagcctcgacgtgct 41379 Query: 412 cagcgccatgggccacagcgcccacaccatcttcgcgctcccgagccaggacggcaagtg 471 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 41378 cagcgccatgggccaccgcgcgcacaccatcttcgcgctcccgagccaggacggcaagtg 41319 Query: 472 gcgcgcgctccgcaagttcgccgccgcagagatgctcgcgcccaggcggatc---tccgc 528 ||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| Sbjct: 41318 gcgcgcgctccgcaagttcgccgccgccgagatgctcgcgccgcggcggatctcgtccgc 41259 Query: 529 cggggccggggcgctgctgcagacc-agatcgttgaggcgc 568 | |||||| |||| |||||||||| ||||||| ||||||| Sbjct: 41258 ggcggccggcgcgcagctgcagaccaagatcgtggaggcgc 41218
>dbj|AK059089.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-B08, full insert sequence Length = 1743 Score = 272 bits (137), Expect = 1e-69 Identities = 239/273 (87%) Strand = Plus / Plus Query: 81 cctccttccttgttgaatgcctaggatggctgatcgtcgtcctcttttctttgtacgtct 140 |||||||||| ||||| ||||| |||||| ||||||||||||| || ||||| ||| Sbjct: 69 cctccttcctcgttgagtgcctgtcatggcttgtcgtcgtcctcttctccctgtacatct 128 Query: 141 tccagttgctccgtgacgctcgccggcgtcttccccctggcccctggccgccgaagccgc 200 ||||| | ||||| ||||| ||||| || || ||||| || ||||||||||||||||||| Sbjct: 129 tccagcttctccgcgacgcccgccgccgcctccccccgggtccctggccgccgaagccgc 188 Query: 201 tcatcggcgacctcctcgacctcggggaggatggccagcagcaccgcgcgttccagcgcc 260 || |||||||||||||||||||||| ||||| ||| ||||||||||| |||||| |||| Sbjct: 189 tcgtcggcgacctcctcgacctcggcgaggacggcaagcagcaccgcacgttcctccgcc 248 Query: 261 tggccgaccgctatggtggcctcatgtgcctccgcttcggcatggtgccccacgtgatca 320 | |||| |||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct: 249 tcgccggccgctacggcggcctcatgtgcctccgcttcggcatggtgccccacgtgatcg 308 Query: 321 tctccacgccggacgccctgcgcgcggtcttcg 353 ||||||| |||||||||||||||||||| |||| Sbjct: 309 tctccaccccggacgccctgcgcgcggtgttcg 341 Score = 260 bits (131), Expect = 4e-66 Identities = 200/221 (90%), Gaps = 4/221 (1%) Strand = Plus / Plus Query: 352 cggcggcggggaaggcaagaaggtggacaacatcgggggcctcccgagcctggacgtcct 411 ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||| || Sbjct: 364 cggcggcggggaaggcaagaaggtggatggcatcgcgggcctcccgagcctcgacgtgct 423 Query: 412 cagcgccatgggccacagcgcccacaccatcttcgcgctcccgagccaggacggcaagtg 471 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 424 cagcgccatgggccaccgcgcgcacaccatcttcgcgctcccgagccaggacggcaagtg 483 Query: 472 gcgcgcgctccgcaagttcgccgccgcagagatgctcgcgcccaggcggatc---tccgc 528 ||||||||||||||||| ||||||||| |||||||||||||| |||||||| ||||| Sbjct: 484 gcgcgcgctccgcaagtccgccgccgccgagatgctcgcgccgcggcggatctcgtccgc 543 Query: 529 cggggccggggcgctgctgcagacc-agatcgttgaggcgc 568 | |||||| |||| |||||||||| ||||||| ||||||| Sbjct: 544 ggcggccggcgcgcagctgcagaccaagatcgtggaggcgc 584
>dbj|AK058424.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-D12, full insert sequence Length = 1411 Score = 272 bits (137), Expect = 1e-69 Identities = 239/273 (87%) Strand = Plus / Plus Query: 81 cctccttccttgttgaatgcctaggatggctgatcgtcgtcctcttttctttgtacgtct 140 |||||||||| ||||| ||||| |||||| ||||||||||||| || ||||| ||| Sbjct: 69 cctccttcctcgttgagtgcctgtcatggcttgtcgtcgtcctcttctccctgtacatct 128 Query: 141 tccagttgctccgtgacgctcgccggcgtcttccccctggcccctggccgccgaagccgc 200 ||||| | ||||| ||||| ||||| || || ||||| || ||||||||||||||||||| Sbjct: 129 tccagcttctccgcgacgcccgccgccgcctccccccgggtccctggccgccgaagccgc 188 Query: 201 tcatcggcgacctcctcgacctcggggaggatggccagcagcaccgcgcgttccagcgcc 260 || |||||||||||||||||||||| ||||| ||| ||||||||||| |||||| |||| Sbjct: 189 tcgtcggcgacctcctcgacctcggcgaggacggcaagcagcaccgcacgttcctccgcc 248 Query: 261 tggccgaccgctatggtggcctcatgtgcctccgcttcggcatggtgccccacgtgatca 320 | |||| |||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct: 249 tcgccggccgctacggcggcctcatgtgcctccgcttcggcatggtgccccacgtgatcg 308 Query: 321 tctccacgccggacgccctgcgcgcggtcttcg 353 ||||||| |||||||||||||||||||| |||| Sbjct: 309 tctccaccccggacgccctgcgcgcggtgttcg 341 Score = 268 bits (135), Expect = 2e-68 Identities = 201/221 (90%), Gaps = 4/221 (1%) Strand = Plus / Plus Query: 352 cggcggcggggaaggcaagaaggtggacaacatcgggggcctcccgagcctggacgtcct 411 ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||| || Sbjct: 364 cggcggcggggaaggcaagaaggtggatggcatcgcgggcctcccgagcctcgacgtgct 423 Query: 412 cagcgccatgggccacagcgcccacaccatcttcgcgctcccgagccaggacggcaagtg 471 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 424 cagcgccatgggccaccgcgcgcacaccatcttcgcgctcccgagccaggacggcaagtg 483 Query: 472 gcgcgcgctccgcaagttcgccgccgcagagatgctcgcgcccaggcggatc---tccgc 528 ||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| Sbjct: 484 gcgcgcgctccgcaagttcgccgccgccgagatgctcgcgccgcggcggatctcgtccgc 543 Query: 529 cggggccggggcgctgctgcagacc-agatcgttgaggcgc 568 | |||||| |||| |||||||||| ||||||| ||||||| Sbjct: 544 ggcggccggcgcgcagctgcagaccaagatcgtggaggcgc 584
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 79.8 bits (40), Expect = 9e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 132 tgtacgtcttccagttgctccgtgacgctcgccggcgtcttccccctggcccctggccgc 191 ||||||||||||||||| || || || ||||| || ||||| || ||||| ||||||| Sbjct: 7872553 tgtacgtcttccagttgttcgccgatgcgcgccgccgccttccacccggcccatggccgc 7872494 Query: 192 cgaagccgctcatcggcgacctcctcgacctcggggaggatggccagcagcaccgc 247 ||||||| ||||||||||||||||| | ||| ||| ||| | ||||||||||||| Sbjct: 7872493 cgaagcctctcatcggcgacctccttgcccttgggaagggcgaccagcagcaccgc 7872438 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 195 agccgctcatcggcgacctcctcgacctcgg 225 |||||||||||||| || ||||||||||||| Sbjct: 7804566 agccgctcatcggcaacatcctcgacctcgg 7804536 Score = 40.1 bits (20), Expect = 7.7 Identities = 44/52 (84%) Strand = Plus / Minus Query: 469 gtggcgcgcgctccgcaagttcgccgccgcagagatgctcgcgcccaggcgg 520 ||||||||| |||| | |||| || |||| ||| ||||||||||||||||| Sbjct: 7872228 gtggcgcgccatccggaggttctccaccgcggagctgctcgcgcccaggcgg 7872177
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 79.8 bits (40), Expect = 9e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 132 tgtacgtcttccagttgctccgtgacgctcgccggcgtcttccccctggcccctggccgc 191 ||||||||||||||||| || || || ||||| || ||||| || ||||| ||||||| Sbjct: 7870388 tgtacgtcttccagttgttcgccgatgcgcgccgccgccttccacccggcccatggccgc 7870329 Query: 192 cgaagccgctcatcggcgacctcctcgacctcggggaggatggccagcagcaccgc 247 ||||||| ||||||||||||||||| | ||| ||| ||| | ||||||||||||| Sbjct: 7870328 cgaagcctctcatcggcgacctccttgcccttgggaagggcgaccagcagcaccgc 7870273 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 195 agccgctcatcggcgacctcctcgacctcgg 225 |||||||||||||| || ||||||||||||| Sbjct: 7802401 agccgctcatcggcaacatcctcgacctcgg 7802371 Score = 40.1 bits (20), Expect = 7.7 Identities = 44/52 (84%) Strand = Plus / Minus Query: 469 gtggcgcgcgctccgcaagttcgccgccgcagagatgctcgcgcccaggcgg 520 ||||||||| |||| | |||| || |||| ||| ||||||||||||||||| Sbjct: 7870063 gtggcgcgccatccggaggttctccaccgcggagctgctcgcgcccaggcgg 7870012
>gb|AC134235.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0030J04, complete sequence Length = 153431 Score = 79.8 bits (40), Expect = 9e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 132 tgtacgtcttccagttgctccgtgacgctcgccggcgtcttccccctggcccctggccgc 191 ||||||||||||||||| || || || ||||| || ||||| || ||||| ||||||| Sbjct: 58151 tgtacgtcttccagttgttcgccgatgcgcgccgccgccttccacccggcccatggccgc 58092 Query: 192 cgaagccgctcatcggcgacctcctcgacctcggggaggatggccagcagcaccgc 247 ||||||| ||||||||||||||||| | ||| ||| ||| | ||||||||||||| Sbjct: 58091 cgaagcctctcatcggcgacctccttgcccttgggaagggcgaccagcagcaccgc 58036 Score = 40.1 bits (20), Expect = 7.7 Identities = 44/52 (84%) Strand = Plus / Minus Query: 469 gtggcgcgcgctccgcaagttcgccgccgcagagatgctcgcgcccaggcgg 520 ||||||||| |||| | |||| || |||| ||| ||||||||||||||||| Sbjct: 57826 gtggcgcgccatccggaggttctccaccgcggagctgctcgcgcccaggcgg 57775
>ref|NM_195222.1| Oryza sativa (japonica cultivar-group) putative geraniol 10-hydroxylase (OSJNBb0086I08.14), mRNA Length = 1509 Score = 46.1 bits (23), Expect = 0.13 Identities = 58/69 (84%), Gaps = 3/69 (4%) Strand = Plus / Plus Query: 157 cgctcgccggcgtcttccccctggcccctggccgccgaagccgctcatcggcgacctcct 216 ||||||||| ||||||||||| ||||| || |||| ||||||||||||| ||||||| Sbjct: 81 cgctcgccgccgtcttccccccggcccatgcccgc---tgccgctcatcggcaacctcct 137 Query: 217 cgacctcgg 225 ||| |||| Sbjct: 138 tgacatcgg 146
>gb|AF416331.1| Ruegeria sp. PR1b plasmid pSD25, complete sequence Length = 148650 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 337 cctgcgcgcggtcttcggcggcg 359 ||||||||||||||||||||||| Sbjct: 98780 cctgcgcgcggtcttcggcggcg 98758
>gb|AC105746.10| Oryza sativa chromosome 10 BAC OSJNBb0086I08 genomic sequence, complete sequence Length = 126842 Score = 46.1 bits (23), Expect = 0.13 Identities = 58/69 (84%), Gaps = 3/69 (4%) Strand = Plus / Minus Query: 157 cgctcgccggcgtcttccccctggcccctggccgccgaagccgctcatcggcgacctcct 216 ||||||||| ||||||||||| ||||| || |||| ||||||||||||| ||||||| Sbjct: 100240 cgctcgccgccgtcttccccccggcccatgcccgc---tgccgctcatcggcaacctcct 100184 Query: 217 cgacctcgg 225 ||| |||| Sbjct: 100183 tgacatcgg 100175
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 46.1 bits (23), Expect = 0.13 Identities = 58/69 (84%), Gaps = 3/69 (4%) Strand = Plus / Plus Query: 157 cgctcgccggcgtcttccccctggcccctggccgccgaagccgctcatcggcgacctcct 216 ||||||||| ||||||||||| ||||| || |||| ||||||||||||| ||||||| Sbjct: 5567282 cgctcgccgccgtcttccccccggcccatgcccgc---tgccgctcatcggcaacctcct 5567338 Query: 217 cgacctcgg 225 ||| |||| Sbjct: 5567339 tgacatcgg 5567347 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 ccgctcatcggcgacctcctcgac 220 |||||||||||| ||||||||||| Sbjct: 10150813 ccgctcatcggcaacctcctcgac 10150790
>dbj|AK070050.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040I08, full insert sequence Length = 1583 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 195 agccgctcatcggcgacctcctcgacctcgg 225 |||||||||||||| || ||||||||||||| Sbjct: 97 agccgctcatcggcaacatcctcgacctcgg 127
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 46.1 bits (23), Expect = 0.13 Identities = 58/69 (84%), Gaps = 3/69 (4%) Strand = Plus / Plus Query: 157 cgctcgccggcgtcttccccctggcccctggccgccgaagccgctcatcggcgacctcct 216 ||||||||| ||||||||||| ||||| || |||| ||||||||||||| ||||||| Sbjct: 5568069 cgctcgccgccgtcttccccccggcccatgcccgc---tgccgctcatcggcaacctcct 5568125 Query: 217 cgacctcgg 225 ||| |||| Sbjct: 5568126 tgacatcgg 5568134 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 ccgctcatcggcgacctcctcgac 220 |||||||||||| ||||||||||| Sbjct: 10156852 ccgctcatcggcaacctcctcgac 10156829
>gb|AC118672.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0078P24, from chromosome 3, complete sequence Length = 146930 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 195 agccgctcatcggcgacctcctcgacctcgg 225 |||||||||||||| || ||||||||||||| Sbjct: 49566 agccgctcatcggcaacatcctcgacctcgg 49596
>emb|CR733495.2|CNS0GSQU Tetraodon nigroviridis full-length cDNA Length = 1195 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 362 gaaggcaagaaggtggacaaca 383 |||||||||||||||||||||| Sbjct: 105 gaaggcaagaaggtggacaaca 126
>emb|CR731215.2|CNS0GR5G Tetraodon nigroviridis full-length cDNA Length = 1256 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 362 gaaggcaagaaggtggacaaca 383 |||||||||||||||||||||| Sbjct: 167 gaaggcaagaaggtggacaaca 188
>emb|CR730446.2|CNS0GQK3 Tetraodon nigroviridis full-length cDNA Length = 1250 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 362 gaaggcaagaaggtggacaaca 383 |||||||||||||||||||||| Sbjct: 161 gaaggcaagaaggtggacaaca 182
>emb|CR728515.2|CNS0GP2H Tetraodon nigroviridis full-length cDNA Length = 1288 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 362 gaaggcaagaaggtggacaaca 383 |||||||||||||||||||||| Sbjct: 197 gaaggcaagaaggtggacaaca 218
>emb|CR724128.1|CNS0GLOM Tetraodon nigroviridis full-length cDNA Length = 1243 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 362 gaaggcaagaaggtggacaaca 383 |||||||||||||||||||||| Sbjct: 162 gaaggcaagaaggtggacaaca 183
>emb|CR724687.2|CNS0GM45 Tetraodon nigroviridis full-length cDNA Length = 1247 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 362 gaaggcaagaaggtggacaaca 383 |||||||||||||||||||||| Sbjct: 165 gaaggcaagaaggtggacaaca 186
>emb|CR700659.1|CNS0G3KV Tetraodon nigroviridis full-length cDNA Length = 1200 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 362 gaaggcaagaaggtggacaaca 383 |||||||||||||||||||||| Sbjct: 112 gaaggcaagaaggtggacaaca 133
>gb|AY260902.1| Rhodospirillum centenum che2 gene cluster, complete sequence Length = 11332 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 gcgcgttccagcgcctggccg 266 ||||||||||||||||||||| Sbjct: 2815 gcgcgttccagcgcctggccg 2795
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 cctcggggaggatggccagca 240 ||||||||||||||||||||| Sbjct: 677079 cctcggggaggatggccagca 677099
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 ggccagcagcaccgcgcgttc 253 ||||||||||||||||||||| Sbjct: 1291311 ggccagcagcaccgcgcgttc 1291331
>gb|AE004627.1| Pseudomonas aeruginosa PAO1, section 188 of 529 of the complete genome Length = 12776 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 ggccagcagcaccgcgcgttccagc 257 ||||||||||| ||||||||||||| Sbjct: 447 ggccagcagcagcgcgcgttccagc 471
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 413 agcgccatgggccacagcgcc 433 ||||||||||||||||||||| Sbjct: 4660342 agcgccatgggccacagcgcc 4660362
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 258 gcctggccgaccgctatggtg 278 ||||||||||||||||||||| Sbjct: 6078300 gcctggccgaccgctatggtg 6078280
>emb|AM156932.1| Streptomyces steffisburgensis cluster for steffimycin biosynthesis, strain NRRL 3193 Length = 42877 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 330 cggacgccctgcgcgcggtcttcgg 354 |||||||||||||| |||||||||| Sbjct: 6695 cggacgccctgcgcacggtcttcgg 6671
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 524 tccgccggggccggggcgctgctg 547 ||||||||| |||||||||||||| Sbjct: 1561915 tccgccgggaccggggcgctgctg 1561938 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 agcaccgcgcgttccagcgc 259 |||||||||||||||||||| Sbjct: 922894 agcaccgcgcgttccagcgc 922913
>ref|NM_195945.1| Oryza sativa (japonica cultivar-group) putative Cytochrome P450 (OSJNBb0023M11.14), mRNA Length = 1557 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 ccgctcatcggcgacctcctcgac 220 |||||||||||| ||||||||||| Sbjct: 115 ccgctcatcggcaacctcctcgac 138
>ref|XM_588354.2| PREDICTED: Bos taurus similar to obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF (LOC511087), mRNA Length = 4626 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 531 gggccggggcgctgctgcag 550 |||||||||||||||||||| Sbjct: 659 gggccggggcgctgctgcag 678
>gb|AE009206.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 232 of 256 of the complete sequence Length = 12965 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 533 gccggggcgctgctgcagac 552 |||||||||||||||||||| Sbjct: 12446 gccggggcgctgctgcagac 12465
>gb|AC135923.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0479C09, complete sequence Length = 156776 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 tcggcggcggggaaggcaag 370 |||||||||||||||||||| Sbjct: 79894 tcggcggcggggaaggcaag 79913
>gb|AF484556.1| Streptomyces atroolivaceus leinamycin biosynthetic gene cluster, complete sequence Length = 135638 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 cgcgttccagcgcctggccg 266 |||||||||||||||||||| Sbjct: 84466 cgcgttccagcgcctggccg 84485
>gb|AF142435.1| Frankia sp. ACN14a/ts-r 20S proteasome beta-subunit precursor (prcB) and 20S proteasome alpha-subunit (prcA) genes, complete cds; putative dienelactone hydrolase-like protein gene, partial cds; and unknown genes Length = 4725 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 cggcgacctcctcgacctcg 224 |||||||||||||||||||| Sbjct: 2137 cggcgacctcctcgacctcg 2118
>emb|AL136991.26| Human DNA sequence from clone RP11-189J1 on chromosome 20 Contains the 3' end of the gene for a novel protein (LOC284776), complete sequence Length = 169342 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 aaatggcctccttccttgtt 94 |||||||||||||||||||| Sbjct: 116466 aaatggcctccttccttgtt 116447
>emb|AL121891.22|HS1187M17 Human DNA sequence from clone RP5-1187M17 on chromosome 20 Contains the 5' end of the AVP gene for arginine vasopressin (neurophysin II), the gene KIAA0860 for a likely ortholog of mouse ubiquitin conjugating enzyme a novel gene 7 interacting protein 5, a novel gene (FLJ3149), a novel gene (KIAA0552), the C20orf116 gene, the 5' end of the ITPA gene for inosine triphosphatase (nucleoside triphosphate pyrophosphatase), a novel transcript and nine CpG islands, complete sequence Length = 125856 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 gggggcctcccgagcctgga 405 |||||||||||||||||||| Sbjct: 124464 gggggcctcccgagcctgga 124445
>emb|X89726.1|RLCYCHJKL R.leguminosarum DNA for cycH, cycJ, cycK and cycL genes Length = 4237 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 gaggatggccagcagcaccg 246 |||||||||||||||||||| Sbjct: 2581 gaggatggccagcagcaccg 2562
>emb|CR933498.1|OSJN00303 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1168G10, complete sequence Length = 142295 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 tcggcggcggggaaggcaag 370 |||||||||||||||||||| Sbjct: 138554 tcggcggcggggaaggcaag 138573
>emb|AL662990.3|OSJN00194 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015C06, complete sequence Length = 147676 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 tcggcggcggggaaggcaag 370 |||||||||||||||||||| Sbjct: 72299 tcggcggcggggaaggcaag 72318
>gb|DQ088847.1| Uncultured bacterium MedeBAC46A06 clone MedeBAC46A06, partial sequence Length = 68835 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 gcctccgcttcggcatggtg 307 |||||||||||||||||||| Sbjct: 14403 gcctccgcttcggcatggtg 14384
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 cgcctggccgaccgctatgg 276 |||||||||||||||||||| Sbjct: 1357956 cgcctggccgaccgctatgg 1357937
>gb|AC092749.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBb0023M11, from chromosome 10, complete sequence Length = 138668 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 ccgctcatcggcgacctcctcgac 220 |||||||||||| ||||||||||| Sbjct: 71034 ccgctcatcggcaacctcctcgac 71011
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 533 gccggggcgctgctgcagac 552 |||||||||||||||||||| Sbjct: 2579475 gccggggcgctgctgcagac 2579494
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 cccctggccgccgaagccgc 200 |||||||||||||||||||| Sbjct: 235014 cccctggccgccgaagccgc 235033
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 tcggcggcggggaaggcaag 370 |||||||||||||||||||| Sbjct: 4959892 tcggcggcggggaaggcaag 4959911
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 tcggcggcggggaaggcaag 370 |||||||||||||||||||| Sbjct: 11754254 tcggcggcggggaaggcaag 11754273
>gb|AY179507.1| Streptomyces hygroscopicus strain NRRL 3602 geldanamycin biosynthesis gene cluster, partial sequence Length = 69644 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 ccggacgccctgcgcgcggt 348 |||||||||||||||||||| Sbjct: 69588 ccggacgccctgcgcgcggt 69607
>gb|AE005015.1| Halobacterium sp. NRC-1 section 46 of 170 of the complete genome Length = 10048 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 tccagcgcctggccgaccgc 271 |||||||||||||||||||| Sbjct: 7577 tccagcgcctggccgaccgc 7596
>emb|Y13146.1|STVTAXREX Simian T-cell lymphotropic virus type I DNA for tax/rex region Length = 709 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 gcaaaatggcctccttcctt 91 |||||||||||||||||||| Sbjct: 634 gcaaaatggcctccttcctt 653
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 cgcctggccgaccgctatgg 276 |||||||||||||||||||| Sbjct: 2166007 cgcctggccgaccgctatgg 2165988
>gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, complete cds; chivosazol biosynthetic gene cluster, complete sequence; and hypothetical protein gene, complete cds Length = 96547 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 cctcctcgacctcggggagg 230 |||||||||||||||||||| Sbjct: 3883 cctcctcgacctcggggagg 3864
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 cgcctggccgaccgctatgg 276 |||||||||||||||||||| Sbjct: 1381543 cgcctggccgaccgctatgg 1381524
>emb|AJ628018.2| Streptomyces sp. SCC 2136 deoxysugar biosynthetic gene cluster Length = 77550 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 ggacgccctgcgcgcggtcttcgg 354 |||||||||||||||||| ||||| Sbjct: 46902 ggacgccctgcgcgcggtgttcgg 46879
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 489 tcgccgccgcagagatgctc 508 |||||||||||||||||||| Sbjct: 1824188 tcgccgccgcagagatgctc 1824207 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,000,848 Number of Sequences: 3902068 Number of extensions: 4000848 Number of successful extensions: 88433 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 86627 Number of HSP's gapped (non-prelim): 1811 length of query: 568 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 545 effective length of database: 17,143,297,704 effective search space: 9343097248680 effective search space used: 9343097248680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)