>MURD_STRAW (Q82AD8) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 467

 Score = 35.0 bits (79), Expect = 0.18
 Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = +3

Query: 93  SCSLQGLNIEVRAGLDKDALPNGGSGIRISPHFWGEGP--AADAELGFPVYAGYSEARAL 266
           +  L+ L I VR G D   LP G   I  +P +  + P  AA AE G PV+     A  L
Sbjct: 47  AADLEALGITVRLG-DGATLPEGTELIVTTPGWQPDKPLFAAAAEAGVPVWGDVELAWRL 105

Query: 267 IGEGTTADLKRLSREAQGMVAEMFASITVDGG 362
            G G+   L       +    +M ASI    G
Sbjct: 106 RGPGSAPWLAVTGTNGKTTTVQMLASILTAAG 137

>JHD2B_HUMAN (Q7LBC6) JmjC domain-containing histone demethylation protein 2B|
           (EC 1.14.11.-) (Jumonji domain-containing protein 1B)
           (Nuclear protein 5qNCA)
          Length = 1761

 Score = 34.7 bits (78), Expect = 0.23
 Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
 Frame = +1

Query: 52  AQAWPQTHSSLDGVAALSKASTLRSERGWTKTLSPTAAAAL--GSPHIS---GARVRRPT 216
           A +WP++HSS D  A+L+K   L      +K +S    +AL  G P +S     R   PT
Sbjct: 671 APSWPESHSSADS-ASLAKKKPLFITTDSSKLVSGVLGSALTSGGPSLSAMGNGRSSSPT 729

Query: 217 PSLASPCTRATRRRGP 264
            SL  P    T    P
Sbjct: 730 SSLTQPIEMPTLSSSP 745

>GCH1_CHLTE (Q8KEA8) GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I)|
          Length = 224

 Score = 33.5 bits (75), Expect = 0.51
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
 Frame = +3

Query: 402 PRVVQL---RLSPELALWKSTQQAIGNVLPPKGKALRQASPQVLAQLGATDWPEALTTTN 572
           PRVV++   RL  +  L +  + AI NVL P+G A+   +  +   +   +   A+TTT+
Sbjct: 142 PRVVEVFARRLQVQERLTQQIRDAIQNVLNPRGVAVVIEATHMCMVMRGVEKQNAVTTTS 201

Query: 573 ALFGACMSN 599
           A+ G  M++
Sbjct: 202 AMSGDFMTS 210

>JHD2B_MOUSE (Q6ZPY7) JmjC domain-containing histone demethylation protein 2B|
           (EC 1.14.11.-) (Jumonji domain-containing protein 1B)
          Length = 1562

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = +1

Query: 58  AWPQTHSSLDGVAALSKASTLRSERGWTKTLSPTAAAAL--GSPHIS---GARVRRPTPS 222
           +WP++HSS +  A L+K   L      +K +S    +AL  GSP +S     R   PT S
Sbjct: 474 SWPESHSSAES-APLAKKKPLFITTDSSKLVSGVLGSALSTGSPSLSAVGNGRSSSPTNS 532

Query: 223 LASPCTRATRRRGP 264
           L  P    T    P
Sbjct: 533 LTQPIEMPTLSSSP 546

>SDK1_HUMAN (Q7Z5N4) Protein sidekick-1 precursor|
          Length = 2213

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = +1

Query: 493 RP*GKPRRRCSPSWAQRTGPKP*RPQMPCSAPACP 597
           RP G P  R  PS A R GP+P RP+   +AP  P
Sbjct: 27  RPRGSPPGRARPSLAPRPGPEPSRPR---AAPETP 58

>YQM4_SCHPO (Q9UU83) Protein P1E11.04c in chromosome III|
          Length = 425

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
 Frame = +1

Query: 1   STTPQFLST----RSHSCL*TAQAWPQTHSSLDGVAALSKASTLRSERGWTKTLSPTAAA 168
           S TP  L+     RSHS + T ++   + S LD ++  +++ T  S  G     SPTAA 
Sbjct: 316 SRTPNTLNRPSNYRSHSSMGTRRSPLNSPSQLDPISNENESDTDDSNTGLRNRTSPTAAP 375

Query: 169 ALGSPHISGARVRRPTPSLA 228
              S   +G    RP P  A
Sbjct: 376 PPPSRRKTGGLNTRPYPQHA 395

>ICP0_PRVIF (P29129) Trans-acting transcriptional protein ICP0 (Early protein|
           0) (EP0)
          Length = 410

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +1

Query: 64  PQTHSSLDGVAALSKASTLRSERGWTKTLSPTAAAALGSPHIS-GARVRRPTPSLASPCT 240
           P+  SS +G +A   AS   +  G   T    AA+A  SP  S  + +RRP+PS ++P T
Sbjct: 325 PEAPSSGEGSSAQHGASGAGAGPGSANT----AASARSSPSSSPSSSMRRPSPSASAPET 380

Query: 241 RATRRRGP*SA 273
            A R   P S+
Sbjct: 381 AAPRGGPPASS 391

>OGT_METTH (O26715) Methylated-DNA--protein-cysteine methyltransferase (EC|
           2.1.1.63) (6-O-methylguanine-DNA methyltransferase)
           (MGMT) (O-6-methylguanine-DNA-alkyltransferase)
          Length = 176

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 22/45 (48%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 130 RGWTKTLSPTAAAALGSPH-ISGARVRRPTPSLASPCTRATRRRG 261
           RG T T S  AA A GSP   +GA  R P P L  PC R  R  G
Sbjct: 107 RGSTLTYSEVAARAGGSPRSAAGALSRNPFP-LVIPCHRVIRSDG 150

>VINEX_MOUSE (Q9R1Z8) Vinexin (Sorbin and SH3 domain-containing protein 3)|
           (SH3-containing adapter molecule 1) (SCAM-1) (SH3
           domain-containing protein SH3P3)
          Length = 733

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 206 RTLAPEMWGDPNAAAAVGESVFVQPRSDLNVEALERAATPSREE 75
           R L+P    D   +  +G   FV P S     A ER ++PSR+E
Sbjct: 399 RPLSPHRMADGGGSPFLGRRDFVYPSSAREPSASERGSSPSRKE 442

>MAP1B_MOUSE (P14873) Microtubule-associated protein 1B (MAP 1B) (MAP1.2)|
            (MAP1(X)) [Contains: MAP1 light chain LC1]
          Length = 2464

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +1

Query: 70   THSSLDGVAALSKASTLRSE--RGWTKTLSPTAAAALGSPH 186
            T+S ++GVA++S AS   S      T  +SP+  A +GSPH
Sbjct: 1538 TYSHMEGVASVSTASVATSSFPEPTTDDVSPSLHAEVGSPH 1578

>MAP1B_HUMAN (P46821) Microtubule-associated protein 1B (MAP 1B) [Contains: MAP1|
            light chain LC1]
          Length = 2468

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +1

Query: 70   THSSLDGVAALSKASTLRSE--RGWTKTLSPTAAAALGSPH 186
            T+S ++GVA++S AS   S      T  +SP+  A +GSPH
Sbjct: 1542 TYSHMEGVASVSTASVATSSFPEPTTDDVSPSLHAEVGSPH 1582

>MAP1B_RAT (P15205) Microtubule-associated protein 1B (MAP 1B) (Neuraxin)|
            [Contains: MAP1 light chain LC1]
          Length = 2459

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +1

Query: 70   THSSLDGVAALSKASTLRSE--RGWTKTLSPTAAAALGSPH 186
            T+S ++GVA++S AS   S      T  +SP+  A +GSPH
Sbjct: 1533 TYSHMEGVASVSTASVATSSFPEPTTDDVSPSLHAEVGSPH 1573

>TMPSD_HUMAN (Q9BYE2) Transmembrane protease, serine 13 (EC 3.4.21.-) (Mosaic|
           serine protease) (Membrane-type mosaic serine protease)
          Length = 581

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
 Frame = +1

Query: 52  AQAWPQTHSSLDGVAALSKASTLRSE--RGWTKTLSPTAAAALGSPHISGARVRRPTPSL 225
           AQA P   S    +A+LS++S+ RS   R  + T SPT    + +  + GA   R +P+ 
Sbjct: 77  AQASPARASP--ALASLSRSSSGRSSSARSASVTTSPTRVYLVRATPV-GAVPIRSSPAR 133

Query: 226 ASPCTRATR 252
           ++P TRATR
Sbjct: 134 SAPATRATR 142

>HPPA2_METMA (Q8PYZ7) Pyrophosphate-energized proton pump 2 (EC 3.6.1.1)|
           (Pyrophosphate-energized inorganic pyrophosphatase 2)
           (H+-PPase 2) (Membrane-bound proton-translocating
           pyrophosphatase 2)
          Length = 671

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
 Frame = +3

Query: 108 GLNIEVRAGLDKDALPNGGSGIRISPHFWGEGPAADAELGF------PVYAGYSEARALI 269
           G++I VRA +   +  +GG+G  +   F G      A +G        +Y  Y +A  ++
Sbjct: 97  GMSISVRANVRTASAASGGAGKALKIAFRGGAVTGLAVIGLALLGTSSLYILYGDADLVV 156

Query: 270 GEGTTADLKRLSREAQGMVAEMFASITVD 356
           G G  A L  L   A G +    A +  D
Sbjct: 157 GFGFGASLISLFARAGGGIFTKAADVGAD 185

>TIM_DROME (P49021) Protein timeless|
          Length = 1421

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +3

Query: 273 EGTTADLKRLSREAQGMVAEMFASITVDGGDGNEEATGLT 392
           EGT A L+ +SR+ Q     M A +  D  DG+EEA+ +T
Sbjct: 324 EGTAATLQEVSRKGQEYQNAM-ARVPADKPDGSEEASDMT 362

>PACC_ASPGI (Q5XL24) pH-response transcription factor pacC/RIM101|
          Length = 678

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +1

Query: 49  TAQAWPQTHSSLDGVAALSKASTLRSERGWTKTLSPTAAAALGSPHI---SGARVRRPTP 219
           T  + P THS   G  AL+  S+ +S       +S ++A  +  PH    SG   R P+ 
Sbjct: 409 TMMSHPATHSPSTGTPALTPPSSAQSYTSGRSPISMSSAHRVSPPHHDGGSGMYPRLPSA 468

Query: 220 SLASPCT 240
           ++A   T
Sbjct: 469 TMADSMT 475

>CATA3_SOYBN (O48560) Catalase-3 (EC 1.11.1.6)|
          Length = 492

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
 Frame = -3

Query: 571 FVVVRASGQSVAPS--WASTCGEACL---RALPLGGSTLPIACWVLFHSASSGD 425
           + ++  +G++V     W +TCGE CL    A+ +GGS    A   L+ S ++G+
Sbjct: 210 YTLINKAGKAVYVKFHWKTTCGEKCLLDDEAIRVGGSNHSHATQDLYDSIAAGN 263

>SPAST_HUMAN (Q9UBP0) Spastin|
          Length = 616

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +1

Query: 544 TGPKP*RPQMPCSAPACPTCSLAPP 618
           + P P RP  PC APA P    APP
Sbjct: 17  SNPVPPRPPPPCLAPAPPAAGPAPP 41

>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c|
           precursor
          Length = 943

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +1

Query: 88  GVAALSKASTLRSERGWTKTLSPTAAAALGSPHISGARVRRPTPSLASPCTRAT 249
           GV  +++ ST  +    T T+ PT A+  G  + + A    PT +  +  T  T
Sbjct: 712 GVTEVTETSTFETTEIITSTIEPTTASGTGGGNPTAAPTNEPTVTTGTETTEGT 765

>RUSC2_MOUSE (Q80U22) RUN and SH3 domain-containing protein 2|
          Length = 1514

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 27/81 (33%), Positives = 36/81 (44%)
 Frame = -2

Query: 299 PFQIRRGSLADQGPRLRVARVHGEAKLGVGRRTLAPEMWGDPNAAAAVGESVFVQPRSDL 120
           P ++  G  A  GP     RV   A+L  GR+  A    G P   A+VG+S   Q  S +
Sbjct: 519 PVRLSEGPAALAGPASPPRRVTSFAELAKGRKKAAGS--GSPPLRASVGDS--SQEFSPI 574

Query: 119 NVEALERAATPSREECVCGHA 57
             EA +  A P  E   C H+
Sbjct: 575 Q-EAQQDRAAPLDEGTRCSHS 594

>MURD_ANASP (Q8YPS9) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 462

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 14/63 (22%)
 Frame = +3

Query: 423 LSPELALWKS-------TQQAIGNVLPPKGKALRQASPQV-------LAQLGATDWPEAL 560
           L+P +++W +         + + N    K K LRQ+  QV       L+++GA+ WP+A 
Sbjct: 172 LAPHISIWTTFTPDHLARHKTLENYYDIKAKLLRQSHLQVFNGDDAYLSKIGASHWPDAY 231

Query: 561 TTT 569
            T+
Sbjct: 232 WTS 234

>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22|
          Length = 1010

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +1

Query: 112 STLRSERGWTKTLSPTAAAALG---SPHISGARVRRPTPSLASPCTRATRRRGP*SAREP 282
           S  RS    T + SP    +L     PH S  R R PTP   SP  R+ R   P      
Sbjct: 51  SPYRSPGERTPSPSPRRDRSLSPRDQPH-SHPRSRSPTPRSQSPSRRSVRSPSPRQGSPA 109

Query: 283 RRI*KGSHARPKA 321
           RR+ + S  R ++
Sbjct: 110 RRVDRSSSPRARS 122

>ARGJ_NITOC (Q3J7A0) Arginine biosynthesis bifunctional protein argJ [Includes:|
           Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine
           acetyltransferase) (Ornithine transacetylase) (OATase);
           Amino-acid acetyltransferase (EC 2.3.1.1)
           (N-acetylglutamate syn
          Length = 405

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 38/140 (27%), Positives = 53/140 (37%), Gaps = 5/140 (3%)
 Frame = +3

Query: 72  AFLPR-WGSCSLQGLNIEVRAGLDKDALPNGGSGIRISPHFWGEGPAAD----AELGFPV 236
           A LP+ W  CS  G +   RA +  D +P G      S HF  +G        A+    +
Sbjct: 130 AALPQVWQVCSPTGWSSVARAIMTTDTVPKG-----TSVHFTCQGHPVTVTGIAKGSGMI 184

Query: 237 YAGYSEARALIGEGTTADLKRLSREAQGMVAEMFASITVDGGDGNEEATGLTPARPRVVQ 416
               +   A +        K L R     VAE F  ITVDG     +A  L       V 
Sbjct: 185 RPDMATMLAFLATDAQVPKKVLQRCLARGVAESFNRITVDGDTSTNDACVLLATGQSEVS 244

Query: 417 LRLSPELALWKSTQQAIGNV 476
           +    + A + + QQA+  V
Sbjct: 245 IATIEDPA-FAALQQAVTEV 263

>MUC1_YEAST (P08640) Mucin-like protein 1 precursor|
          Length = 1367

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 20/74 (27%), Positives = 33/74 (44%)
 Frame = +1

Query: 22  STRSHSCL*TAQAWPQTHSSLDGVAALSKASTLRSERGWTKTLSPTAAAALGSPHISGAR 201
           ST + S   ++     T  S    ++ S++ST  S    + T S T A A  +P  +   
Sbjct: 211 STTTSSTSESSTTTSSTSESSTTTSSTSESSTTTSSTSESSTSSSTTAPA--TPTTTSCT 268

Query: 202 VRRPTPSLASPCTR 243
             +PTP   + CT+
Sbjct: 269 KEKPTPPTTTSCTK 282

>COL1_CAEEL (P08124) Cuticle collagen 1 precursor (Protein squat-3) (Protein|
           dumpy-15)
          Length = 296

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +1

Query: 502 GKPRRRCSPSWAQRTGPKP*RPQMPCSAPACPTCSLAPP 618
           GKP R  +P      G  P  P  P + P C  C   PP
Sbjct: 112 GKPGRPGAPGTPGTPGKPPVAPCEPTTPPPCKPCPQGPP 150

>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2424

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +2

Query: 488  GQGPEASLAAGARPAGRNGLARSPDDHKCPVRRL 589
            G+GP   LA  ARPAG   L   P   + P  RL
Sbjct: 2320 GRGPSVCLARAARPAGPQRLLPGPRTGQAPRARL 2353

>LIFO_CHRVO (Q7NUI5) Lipase chaperone (Lipase foldase) (Lipase helper protein)|
           (Lipase activator protein) (Lipase modulator)
          Length = 303

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 2/111 (1%)
 Frame = +3

Query: 201 GPAADAELGFPVYAGYSEARALIGEGTTADLKRLSREAQGMVAEMFASITVDGGDGNEEA 380
           GP A A   F  Y GY  + A        DL       Q    + F+   +DG  G+E+ 
Sbjct: 100 GPLAQAMGLFDRYVGYKRSLAGKAAAAATDLSHRLELVQAARRQYFSQAELDGLFGDEDR 159

Query: 381 TGLTPARPRVVQLRLSPELALWKSTQQA--IGNVLPPKGKALRQASPQVLA 527
                AR   ++   +P L++ +  ++   +   LPP  +A R+   + LA
Sbjct: 160 YDNFTARRLAIE--ANPALSVDEKRRRVAQLEQQLPPGLRAAREEPVKHLA 208


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,678,960
Number of Sequences: 219361
Number of extensions: 1847259
Number of successful extensions: 6226
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 5853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6219
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)