Clone Name | bart48e04 |
---|---|
Clone Library Name | barley_pub |
>A4_DROME (P14599) Beta-amyloid-like protein precursor| Length = 887 Score = 34.7 bits (78), Expect = 0.21 Identities = 26/91 (28%), Positives = 39/91 (42%) Frame = -2 Query: 435 KRQSRDCMWFLASESPTNASVLFPTRRKNLSASNRGRSHRLGCHRHLRNSKSGRPYFMQF 256 KR++ C +E P NA + +K L A ++ R+H L +RHL N SG P Sbjct: 497 KREAMTCYTQALTEQPPNAHHVEKCLQKLLRALHKDRAHALAHYRHLLN--SGGP----- 549 Query: 255 WCSWM*EHVSLV*CGGVSASGTHSPRKMSHL 163 GG+ A+ + PR + L Sbjct: 550 --------------GGLEAAASERPRTLERL 566
>PROL1_HUMAN (Q99935) Proline-rich protein 1 precursor (PRL1) (Basic| proline-rich lacrimal protein) Length = 201 Score = 34.3 bits (77), Expect = 0.28 Identities = 18/53 (33%), Positives = 25/53 (47%) Frame = +2 Query: 59 TVFLSALIILSYFTSVPYLSYSGLPYYRSYFSPLPKCDIFRGEWVPEADTPPH 217 T FL L ++S FT +S PY P P ++R WVP + PP+ Sbjct: 4 TFFLGLLALISCFTPSESQRFSRRPYLPGQLPPPP---LYRPRWVPPSPPPPY 53
>HBA_CHRPI (P13273) Hemoglobin alpha-A subunit (Hemoglobin alpha-A chain)| (Alpha-A-globin) Length = 141 Score = 33.5 bits (75), Expect = 0.48 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 3/114 (2%) Frame = +2 Query: 224 NETCSYIQEHQNCMKYGRPDLEFLRWRWQPSRCDLPRFD---ADKFFRLVGNKTLAFVGD 394 N+ ++++E YG LE + + ++ P FD R G K L +G+ Sbjct: 15 NKVAAHVEE------YGAETLERMFTVYPQTKTYFPHFDLHHGSAQIRTHGKKVLTALGE 68 Query: 395 SLARNHMQSLLCLLSKVASPKEVTERTDPIKILHYERYNFTIKIIWSPFLVRTE 556 ++ NH+ L LSK++ T R DP+ + I P ++ E Sbjct: 69 AV--NHIDDLASALSKLSDIHAQTLRVDPVNFKFLNHCFLVVVAIHQPSVLTPE 120
>VNSM_INSV (Q01268) Nonstructural protein NS-M| Length = 303 Score = 33.1 bits (74), Expect = 0.62 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Frame = +2 Query: 161 PKCDIFRGEW-VPEADTPPHYTNETCSYIQEHQNCMKYGRPDLEF--LRWRWQPSRCDLP 331 P C +F W +P+ + T+E C +Q H C + + D+ F + + W CD P Sbjct: 175 PICFVFYLNWSIPKVNN----TSENC--VQLHLLCDQVYKKDVSFASVMYSWTKEFCDSP 228 Query: 332 RFDADK 349 R D DK Sbjct: 229 RADLDK 234
>GNRP_HUMAN (Q13972) Guanine nucleotide-releasing protein (GNRP) (Ras-specific| nucleotide exchange factor CDC25) (Ras-specific guanine nucleotide-releasing factor) Length = 1275 Score = 31.6 bits (70), Expect = 1.8 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = +2 Query: 347 KFFRLVGNKTLAFVGDSLARNHMQSLL--CLLSKVASPKEVTERTDPIKILHYERYNFT 517 K+F L+ N F DS +R LL C+ + SPK +P++ HY NF+ Sbjct: 42 KWFALLQNLLFYFESDSSSRPSGLYLLEGCVCDRAPSPKPALSAKEPLEKQHYFTVNFS 100
>PEVRA_PIG (Q863Y7) Endogenous retrovirus A receptor precursor| Length = 446 Score = 30.0 bits (66), Expect = 5.3 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%) Frame = +2 Query: 47 FVPATVFLSALIILSYFTSVPYLSYSGLPYYRSYF-----SPLPKCDIFRGEWVPEADTP 211 F+ T L+ S T +P+LS P+ RS+F S L C + G+ V + P Sbjct: 114 FLALTFVLALACCASNVTYLPFLSRLPPPFLRSFFLGQGLSALLPCVLALGQGVGRLECP 173 Query: 212 PHYTNET 232 P N T Sbjct: 174 PAPANGT 180
>GWT1_CANAL (Q873N2) GPI-anchored wall transfer protein 1 (EC 2.3.-.-)| (Inositol acyltransferase GWT1) Length = 485 Score = 30.0 bits (66), Expect = 5.3 Identities = 22/72 (30%), Positives = 33/72 (45%) Frame = +2 Query: 17 LTMVLLIKLLFVPATVFLSALIILSYFTSVPYLSYSGLPYYRSYFSPLPKCDIFRGEWVP 196 L+ LL K L A ++ L +L+ S+ YS P Y YF +P I+ + Sbjct: 36 LSFRLLKKSLGDLALIYDYILNVLTILASITV--YSNSPSYLHYFIVIPSLVIYLVNYHV 93 Query: 197 EADTPPHYTNET 232 E + PH N+T Sbjct: 94 EKPSSPHRQNDT 105
>BAI3_MOUSE (Q80ZF8) Brain-specific angiogenesis inhibitor 3 precursor| Length = 1522 Score = 30.0 bits (66), Expect = 5.3 Identities = 16/54 (29%), Positives = 27/54 (50%) Frame = -2 Query: 495 CSILMGSVLSVTSFGDATLDKRQSRDCMWFLASESPTNASVLFPTRRKNLSASN 334 CS L+ V+ S+ + + + +C W L + PT S+ +K+LS SN Sbjct: 30 CSTLVKGVI-YGSYSVSEMFPKNFTNCTWTLENPDPTKYSIYLKFSKKDLSCSN 82
>BAI3_HUMAN (O60242) Brain-specific angiogenesis inhibitor 3 precursor| Length = 1522 Score = 30.0 bits (66), Expect = 5.3 Identities = 16/54 (29%), Positives = 27/54 (50%) Frame = -2 Query: 495 CSILMGSVLSVTSFGDATLDKRQSRDCMWFLASESPTNASVLFPTRRKNLSASN 334 CS L+ V+ S+ + + + +C W L + PT S+ +K+LS SN Sbjct: 30 CSTLVKGVI-YGSYSVSEMFPKNFTNCTWTLENPDPTKYSIYLKFSKKDLSCSN 82
>DACT1_HUMAN (Q9NYF0) Dapper homolog 1 (hDPR1) (Heptacellular carcinoma novel| gene 3 protein) Length = 836 Score = 29.6 bits (65), Expect = 6.9 Identities = 14/29 (48%), Positives = 20/29 (68%) Frame = -1 Query: 367 PDETEELIGVKPREVAPARLPPPPQELQV 281 P E+ +L G P+E +P+R P PPQE +V Sbjct: 475 PKESAQLSGASPKE-SPSRGPAPPQENKV 502
>Y3348_STRCO (Q9X8H1) Hypothetical protein SCO3348| Length = 309 Score = 29.3 bits (64), Expect = 9.0 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = +1 Query: 403 QEPHAVPTLPLVQGGVAEGGDREDGPHQDTALRALQLHHKNHLVAFPGE 549 +EP A +LPL G + +D PH D +RAL+ H + + GE Sbjct: 149 EEPDAAVSLPLGAGRLTAARLPDDPPHPDD-VRALRRHVRTEIARTVGE 196
>DDHD1_HUMAN (Q8NEL9) Probable phospholipase DDHD1 (EC 3.1.1.-) (DDHD domain| protein 1) (Phosphatidic acid-preferring phospholipase A1 homolog) (PA-PLA1) Length = 900 Score = 29.3 bits (64), Expect = 9.0 Identities = 13/44 (29%), Positives = 20/44 (45%) Frame = +2 Query: 137 YRSYFSPLPKCDIFRGEWVPEADTPPHYTNETCSYIQEHQNCMK 268 Y Y++ K + RG+W + P E+ QEH NC + Sbjct: 274 YPVYWNQADKIPVMRGQWFIDGTWQPLEEEESNLIEQEHLNCFR 317
>PEVR2_HUMAN (Q9NWF4) Porcine endogenous retrovirus A receptor 2 precursor| (PERV-A receptor 2) (Protein GPR172B) Length = 448 Score = 29.3 bits (64), Expect = 9.0 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%) Frame = +2 Query: 32 LIKLLFVPATVFLSALIILSYFTSVPYLSYSGLPYYRSYF-----SPLPKCDIFRGEWVP 196 L + F+ + L+ S T +P+LS+ P+ RS+F S L C + + V Sbjct: 109 LHSVAFLTLALVLAMACCTSNVTFLPFLSHLPPPFLRSFFLGQGLSALLPCVLALVQGVG 168 Query: 197 EADTPPHYTNET 232 + PP TN T Sbjct: 169 RLECPPAPTNGT 180
>HBAA_GEONI (P83135) Hemoglobin alpha-A subunit (Hemoglobin alpha-A chain)| (Alpha-A-globin) Length = 141 Score = 29.3 bits (64), Expect = 9.0 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%) Frame = +2 Query: 266 KYGRPDLEFLRWRWQPSRCDLPRFDA---DKFFRLVGNKTLAFVGDSLARNHMQSLLCLL 436 +YG LE L + ++ P FD R G K L+ +G+++ NH+ + L Sbjct: 23 EYGSETLERLFIVYPSTKTYFPHFDLHHDSAQVRAHGRKVLSALGEAV--NHIDDIPGAL 80 Query: 437 SKVASPKEVTERTDPI 484 SK++ T R DP+ Sbjct: 81 SKLSDLHAQTLRVDPV 96 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,583,502 Number of Sequences: 219361 Number of extensions: 1444125 Number of successful extensions: 5191 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4944 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5180 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)