>CWC15_SCHPO (P78794) Pre-mRNA-splicing factor cwc15 (Complexed with cdc5|
           protein 15) (Cell cycle control protein cwf15)
          Length = 265

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 9/58 (15%)
 Frame = +3

Query: 270 LAQSFT-PSTDQKPNNYIE--RQLLMGGFVEVQASATSSQDSVQS------VTIKAKK 416
           L + FT PSTD KPNN +E   Q L+   +E    A+ S DSV S      V+IK +K
Sbjct: 83  LIEGFTSPSTDDKPNNDVEVDYQELLRQTLEADEDASDSDDSVDSSNKNSEVSIKRRK 140

>CPIN1_MOUSE (Q8WTY4) Anamorsin (Cytokine-induced apoptosis inhibitor 1)|
          Length = 309

 Score = 33.9 bits (76), Expect = 0.28
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 21/98 (21%)
 Frame = +3

Query: 222 KLVAEISRVLKAGGIVLAQSFTPSTD-----QKPNNYIERQLLMGGFVEV---QASATSS 377
           +++AE++R+L+ GG +  +    + +      K  + +   L + G VE+   Q  A S 
Sbjct: 78  EVLAEMARILRPGGCLFLKEPVETAEVNNDKMKTASKLCSALTLSGLVEIKELQREALSP 137

Query: 378 Q-------------DSVQSVTIKAKKPSWSMGSSFPLK 452
           +             DS++SV +  KKP++ +GSS  LK
Sbjct: 138 EEVQSVQEHLGYHSDSLRSVRVTGKKPNFEVGSSSQLK 175

>AMPA_CORDI (Q6NG90) Probable cytosol aminopeptidase (EC 3.4.11.1) (Leucine|
           aminopeptidase) (LAP) (Leucyl aminopeptidase)
          Length = 500

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 13/137 (9%)
 Frame = +3

Query: 60  PIRGVADLAAAAGVSREEVVVITQCATLGGKL------PFDDASVGSVLSVIKNVESFGD 221
           P  G+ D+ +  G S   V  I   A LG KL      P  +   G       +V +   
Sbjct: 278 PGAGMDDMISDMGGSATMVATIIAAARLGVKLNVTATIPLAENMPGGNAFRPGDVITHYG 337

Query: 222 KLVAEISRVLKAGGIVLAQSFTPSTDQKPNNYIERQLLMGGFVEVQASATSS-------Q 380
            + +EI      G +VLA +   +++ KP+  +    L G  +      TS        +
Sbjct: 338 GITSEILNTDAEGRLVLADAIARASEDKPDYLLNVATLTGAQIVALGDRTSGVMGSDEFR 397

Query: 381 DSVQSVTIKAKKPSWSM 431
           DSV        +P+W+M
Sbjct: 398 DSVALTGRTVGEPAWAM 414

>R1A3_SOLDE (Q6L440) Putative late blight resistance protein homolog R1A-3|
          Length = 760

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
 Frame = +3

Query: 135 ATLGGKLPFDDASVGSVLSVI-KNVESFGDKLVAEISRVLKAGGIVLAQSFTPSTDQKP- 308
           A L GKLP     V   LS + K VESF +  V +ISR+++   + +++SF  S++ +  
Sbjct: 211 AKLCGKLPLSIVFVAGTLSEMEKEVESFLEDRVIDISRLIR---LWISESFIKSSEGRSL 267

Query: 309 --------NNYIERQLLM 338
                    N I R L+M
Sbjct: 268 EDIAEGYLENLIGRNLVM 285

>RBL1_HUMAN (P28749) Retinoblastoma-like protein 1 (107 kDa|
           retinoblastoma-associated protein) (PRB1) (P107)
          Length = 1068

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 11/84 (13%)
 Frame = +3

Query: 105 REEVVVITQCATLGGKLPFDDASVGSVLSVIKNVESFGDKL-----------VAEISRVL 251
           RE+  VIT  A+    +    + + S+++ +KN  S  D+L           V  I ++L
Sbjct: 378 REKEAVITPVASATQSV----SRLQSIVAGLKNAPS--DQLINIFESCVRNPVENIMKIL 431

Query: 252 KAGGIVLAQSFTPSTDQKPNNYIE 323
           K  G    Q +T STD++P ++I+
Sbjct: 432 KGIGETFCQHYTQSTDEQPGSHID 455

>CPIN1_HUMAN (Q6FI81) Anamorsin (Cytokine-induced apoptosis inhibitor 1)|
           (CUA001)
          Length = 312

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 21/101 (20%)
 Frame = +3

Query: 222 KLVAEISRVLKAGG-IVLAQSFTPSTDQ----KPNNYIERQLLMGGFVEVQASATS---- 374
           +++AEI+R+L+ GG + L +    + D     K  + +   L + G VEV+         
Sbjct: 78  EILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGLVEVKELQREPLTP 137

Query: 375 ------------SQDSVQSVTIKAKKPSWSMGSSFPLKKAV 461
                         D++  V I  KKP++ +GSS  LK ++
Sbjct: 138 EEVQSVREHLGHESDNLLFVQITGKKPNFEVGSSRQLKLSI 178

>ARX1_YEAST (Q03862) Probable metalloprotease ARX1 (EC 3.-.-.-) (Associated|
           with ribosomal export complex protein 1)
          Length = 593

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 19/43 (44%), Positives = 23/43 (53%)
 Frame = +3

Query: 69  GVADLAAAAGVSREEVVVITQCATLGGKLPFDDASVGSVLSVI 197
           G AD  AAA ++ E VV +  CA    KLP   AS+G   S I
Sbjct: 179 GKADAVAAAHIAMETVVALLACALTPEKLP---ASLGGTSSGI 218

>AMPA_RHOBA (Q7UJ62) Probable cytosol aminopeptidase (EC 3.4.11.1) (Leucine|
           aminopeptidase) (LAP) (Leucyl aminopeptidase)
          Length = 507

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 8/129 (6%)
 Frame = +3

Query: 69  GVADLAAAAGVSREEVVVITQCATLGGKLPFDDASVGSVLSVIKNVESFGDKLVAEISRV 248
           GV +  A   V R    VI  C      +  D   +G V      +E+   K + EI   
Sbjct: 307 GVMNALAKLKVPRN---VIGLCGLAENMVSGDSYKLGDV------IETRSGKTI-EILNT 356

Query: 249 LKAGGIVLAQSFTPSTDQKPNNYIERQLLMGGF-----VEVQASATSSQ---DSVQSVTI 404
              G +VLA +   +  QKP   ++   L G       ++V    T++Q   D+VQS   
Sbjct: 357 DAEGRVVLADTLDVAVQQKPQAIVDLATLTGACMVALGIDVAGLMTNNQALCDAVQSAAE 416

Query: 405 KAKKPSWSM 431
              +P W +
Sbjct: 417 SECEPVWQL 425

>COQ5_DROME (Q9VYF8) Ubiquinone biosynthesis methyltransferase COQ5,|
           mitochondrial precursor (EC 2.1.1.-)
          Length = 301

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +3

Query: 120 VITQCATLGGKLPFDDASVGS--VLSVIKNVESFGDKLVAEISRVLKAGGIVLAQSFTPS 293
           V  QCA    KLPF DAS  +  +   I+N     DK+++E  RVL+ GG  +   F+  
Sbjct: 167 VAWQCAD-AEKLPFPDASFTAYTIAFGIRNCTHV-DKVLSEAYRVLQPGGRFMCLEFSHL 224

Query: 294 TDQ 302
           T++
Sbjct: 225 TNE 227

>FBN1_HUMAN (P35555) Fibrillin-1 precursor|
          Length = 2871

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -2

Query: 413  LCLDGNRLHAILR-ACSRSLHFNKTTHE*LALDIIVWLLISGGCEALCQHNSTSFQHSAN 237
            LC +G  ++ I +  C+ +  ++ T      +DI    +++GGCE  C ++  S++ S  
Sbjct: 1165 LCPNGRCVNLIGKYQCACNPGYHSTPDRLFCVDIDECSIMNGGCETFCTNSEGSYECSCQ 1224

Query: 236  FSNQLIP 216
                L+P
Sbjct: 1225 PGFALMP 1231

>CP3A4_HUMAN (P08684) Cytochrome P450 3A4 (EC 1.14.13.67) (Quinine|
           3-monooxygenase) (CYPIIIA4) (Nifedipine oxidase)
           (Taurochenodeoxycholate 6-alpha-hydroxylase) (EC
           1.14.13.97) (NF-25) (P450-PCN1)
          Length = 502

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 3/19 (15%)
 Frame = +2

Query: 173 RGFCSF---CHKKCGELWG 220
           +GFC F   CHKK G++WG
Sbjct: 54  KGFCMFDMECHKKYGKVWG 72

>RRMA_ECOLI (P36999) Ribosomal RNA large subunit methyltransferase A (EC|
           2.1.1.51) (rRNA (guanine-N(1)-)-methyltransferase) (23S
           rRNA m1G745 methyltransferase)
          Length = 269

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +3

Query: 123 ITQCATLGGKLPFDDASVGSVLSVIKNVESFGDKLVAEISRVLKAGGIVLAQSFTP 290
           +T C     +LPF D S+ +++ +      +      E++RV+K GG V+  +  P
Sbjct: 132 VTFCVASSHRLPFSDTSMDAIIRI------YAPCKAEELARVVKPGGWVITATPGP 181

>CP3A3_HUMAN (P05184) Cytochrome P450 3A3 (EC 1.14.14.1) (CYPIIIA3) (HLp)|
          Length = 503

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 3/19 (15%)
 Frame = +2

Query: 173 RGFCSF---CHKKCGELWG 220
           +GFC F   CHKK G++WG
Sbjct: 54  KGFCMFDMECHKKYGKVWG 72

>DOCK1_HUMAN (Q14185) Dedicator of cytokinesis protein 1 (180 kDa protein|
            downstream of CRK) (DOCK180)
          Length = 1865

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 19/62 (30%), Positives = 33/62 (53%)
 Frame = +3

Query: 264  IVLAQSFTPSTDQKPNNYIERQLLMGGFVEVQASATSSQDSVQSVTIKAKKPSWSMGSSF 443
            ++L+++ +P   Q+P + +   +       V  S+ SSQ +   VT +AK  S+SM SS 
Sbjct: 1727 VILSETISPLRPQRPKSQVMNVIGSERRFSVSPSSPSSQQTPPPVTPRAKL-SFSMQSSL 1785

Query: 444  PL 449
             L
Sbjct: 1786 EL 1787

>RUVA_NOCFA (Q5YTE7) Holliday junction ATP-dependent DNA helicase ruvA (EC|
           3.6.1.-)
          Length = 201

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 9/113 (7%)
 Frame = +3

Query: 159 FDDASVGSVLSVIKNVESFGDKLVAEISRVLKAGGI--VLAQSFTPSTDQKPN---NYIE 323
           F D     +  +++ V   G +L   +  VL+   +   LA+S   +  + P       E
Sbjct: 62  FADTEARDLFGLLQTVSGVGPRLAMAVLAVLEPEALRKALAESNVAALTRVPGIGKRGAE 121

Query: 324 RQLL----MGGFVEVQASATSSQDSVQSVTIKAKKPSWSMGSSFPLKKAVRAL 470
           R ++        V VQA    S  +V +  ++ +      G  FPLK+A +AL
Sbjct: 122 RMVVELRDKVNLVPVQAGPPGSTPAVAATPVREQVVEALTGLGFPLKQAEQAL 174

>ATR_ASHGO (Q75DB8) Serine/threonine-protein kinase MEC1 (EC 2.7.11.1)|
            (DNA-damage checkpoint kinase MEC1) (Mitosis entry
            checkpoint protein 1) (ATR homolog)
          Length = 2324

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -2

Query: 407  LDGNRLHAILRACSRSLHFNKTTHE*LALDIIVWLLISGGCEALCQHNSTSFQHSANFSN 228
            L G R ++IL  CS  + FN++    LA+ + +W+ I      L    S +   S  F  
Sbjct: 1581 LHGIRDNSILSKCSTDIQFNRSVRN-LAVRLKMWVAILDQLLLLSMRKSQNLMRSEEFVK 1639

Query: 227  Q 225
            Q
Sbjct: 1640 Q 1640


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,479,334
Number of Sequences: 219361
Number of extensions: 1234144
Number of successful extensions: 3648
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3647
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)