Clone Name | bart48d10 |
---|---|
Clone Library Name | barley_pub |
>gb|BT016572.1| Zea mays clone Contig405 mRNA sequence Length = 1144 Score = 222 bits (112), Expect = 9e-55 Identities = 208/240 (86%) Strand = Plus / Plus Query: 25 cggcggcgctcgcggtgacggacgagctggccctgccgatccgcggggtggcggacctgg 84 |||||||||||||||||||||||||| |||||||||||||||| | ||||| ||| |||| Sbjct: 34 cggcggcgctcgcggtgacggacgaggtggccctgccgatccgggcggtgggggatctgg 93 Query: 85 cggccgccgccggggtctcgcgggaggaggtcgtcgtcatcacgcagtgcgccacgctcg 144 |||||||||||| |||||||||||||||||||| ||||||||| |||||||| |||||| Sbjct: 94 cggccgccgccgaggtctcgcgggaggaggtcgccgtcatcacccagtgcgcggcgctcg 153 Query: 145 gtgggaagttgccttttgatgacgcgtccgtgggttctgttctttctgtcataaaaaatg 204 ||||||||||||||||||| || || || | ||| | |||||| | | ||| ||||| | Sbjct: 154 gtgggaagttgccttttgaagatgcatcagctggtgcggttcttgcagccattaaaaacg 213 Query: 205 tggagagctttggggataagttggttgctgaaattagccgagtgctgaaagctggtggaa 264 |||| ||||| |||| | |||||||||||||| || || ||||||||||||||||||| Sbjct: 214 tggaaagcttcagggagcaattggttgctgaaatcaggcgggtgctgaaagctggtggaa 273 Score = 119 bits (60), Expect = 9e-24 Identities = 181/220 (82%), Gaps = 1/220 (0%) Strand = Plus / Plus Query: 299 tcagaagccaaacaattatatcgagcgccagctactcatgggtggttttgttgaagtgca 358 ||||||||| |||| | |||| |||||| || |||| |||||||| |||| ||||||||| Sbjct: 308 tcagaagccgaacactgatattgagcgcaagttactgatgggtggatttgctgaagtgca 367 Query: 359 agcttctgctacaagctcgcaggatagcgtgcaatctgttaccatcaaggcaaagaagcc 418 | |||||||| ||| ||||||||||||||||||||||||||| | |||||||||||| | Sbjct: 368 atcttctgctgcaaactcgcaggatagcgtgcaatctgttacagttaaggcaaagaaggc 427 Query: 419 atcctggagtatgggctc-atccttccccctgaagaaagcagtaagggctcttccaaaga 477 |||||| |||||||| || || ||||| |||||| || || || ||||| |||| Sbjct: 428 tagctggagcatgggctctttcttttccccttaagaaaacaacaaaagcccttcccaaga 487 Query: 478 ttgaaattgacgatgatgacgaactgattgatgaagacag 517 || |||||||||| || || ||||||||||||||||| Sbjct: 488 ttcaaattgacgacgactctgatctgattgatgaagacag 527
>ref|XM_474324.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 798 Score = 196 bits (99), Expect = 5e-47 Identities = 162/183 (88%) Strand = Plus / Plus Query: 14 ggcgacggctgcggcggcgctcgcggtgacggacgagctggccctgccgatccgcggggt 73 |||||||| |||| ||||||||||||||||||||| |||||| ||||| | |||| ||| Sbjct: 6 ggcgacggtggcggaggcgctcgcggtgacggacgaactggccttgccgcttcgcgcggt 65 Query: 74 ggcggacctggcggccgccgccggggtctcgcgggaggaggtcgtcgtcatcacgcagtg 133 || ||| |||||||||||||| |||||||||||||||||||| || |||||||||||||| Sbjct: 66 gggggatctggcggccgccgcgggggtctcgcgggaggaggtggtggtcatcacgcagtg 125 Query: 134 cgccacgctcggtgggaagttgccttttgatgacgcgtccgtgggttctgttctttctgt 193 |||| |||| ||||||||||| ||||||||||| || || || |||||||||||| |||| Sbjct: 126 cgcctcgcttggtgggaagttaccttttgatgatgcatcagttggttctgttcttgctgt 185 Query: 194 cat 196 ||| Sbjct: 186 cat 188 Score = 133 bits (67), Expect = 6e-28 Identities = 148/175 (84%) Strand = Plus / Plus Query: 345 tttgttgaagtgcaagcttctgctacaagctcgcaggatagcgtgcaatctgttaccatc 404 |||||||| ||||||||||||||| |||| || |||||||||| ||| |||||||| || Sbjct: 331 tttgttgacgtgcaagcttctgctgcaagttcccaggatagcgagcattctgttactatt 390 Query: 405 aaggcaaagaagccatcctggagtatgggctcatccttccccctgaagaaagcagtaagg 464 |||||||||||| || ||||| ||||||| ||||||||||| |||||||| || | Sbjct: 391 aaggcaaagaaggtctcttggagcttgggctcttccttccccctcaagaaagccacaaag 450 Query: 465 gctcttccaaagattgaaattgacgatgatgacgaactgattgatgaagacagcc 519 | ||||||||||||| | ||||| |||||| |||||||||||||||||||||| Sbjct: 451 ggtcttccaaagattcagattgatgatgattctgaactgattgatgaagacagcc 505
>dbj|AK102124.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033084O13, full insert sequence Length = 1379 Score = 196 bits (99), Expect = 5e-47 Identities = 162/183 (88%) Strand = Plus / Plus Query: 14 ggcgacggctgcggcggcgctcgcggtgacggacgagctggccctgccgatccgcggggt 73 |||||||| |||| ||||||||||||||||||||| |||||| ||||| | |||| ||| Sbjct: 85 ggcgacggtggcggaggcgctcgcggtgacggacgaactggccttgccgcttcgcgcggt 144 Query: 74 ggcggacctggcggccgccgccggggtctcgcgggaggaggtcgtcgtcatcacgcagtg 133 || ||| |||||||||||||| |||||||||||||||||||| || |||||||||||||| Sbjct: 145 gggggatctggcggccgccgcgggggtctcgcgggaggaggtggtggtcatcacgcagtg 204 Query: 134 cgccacgctcggtgggaagttgccttttgatgacgcgtccgtgggttctgttctttctgt 193 |||| |||| ||||||||||| ||||||||||| || || || |||||||||||| |||| Sbjct: 205 cgcctcgcttggtgggaagttaccttttgatgatgcatcagttggttctgttcttgctgt 264 Query: 194 cat 196 ||| Sbjct: 265 cat 267 Score = 133 bits (67), Expect = 6e-28 Identities = 148/175 (84%) Strand = Plus / Plus Query: 345 tttgttgaagtgcaagcttctgctacaagctcgcaggatagcgtgcaatctgttaccatc 404 |||||||| ||||||||||||||| |||| || |||||||||| ||| |||||||| || Sbjct: 410 tttgttgacgtgcaagcttctgctgcaagttcccaggatagcgagcattctgttactatt 469 Query: 405 aaggcaaagaagccatcctggagtatgggctcatccttccccctgaagaaagcagtaagg 464 |||||||||||| || ||||| ||||||| ||||||||||| |||||||| || | Sbjct: 470 aaggcaaagaaggtctcttggagcttgggctcttccttccccctcaagaaagccacaaag 529 Query: 465 gctcttccaaagattgaaattgacgatgatgacgaactgattgatgaagacagcc 519 | ||||||||||||| | ||||| |||||| |||||||||||||||||||||| Sbjct: 530 ggtcttccaaagattcagattgatgatgattctgaactgattgatgaagacagcc 584
>ref|XM_474393.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 795 Score = 194 bits (98), Expect = 2e-46 Identities = 152/170 (89%) Strand = Plus / Plus Query: 27 gcggcgctcgcggtgacggacgagctggccctgccgatccgcggggtggcggacctggcg 86 ||||||||||||||||||||||||||||| ||||| |||||| ||||| ||| |||||| Sbjct: 16 gcggcgctcgcggtgacggacgagctggcgttgccgctccgcgcggtgggggatctggcg 75 Query: 87 gccgccgccggggtctcgcgggaggaggtcgtcgtcatcacgcagtgcgccacgctcggt 146 |||||||| ||| |||||||||||||||| || |||||||||||||||||| |||| ||| Sbjct: 76 gccgccgcggggttctcgcgggaggaggtggtggtcatcacgcagtgcgcctcgcttggt 135 Query: 147 gggaagttgccttttgatgacgcgtccgtgggttctgttctttctgtcat 196 |||||||| ||||||||||| || || || |||||||||||| ||||||| Sbjct: 136 gggaagttaccttttgatgatgcatcagttggttctgttcttgctgtcat 185 Score = 141 bits (71), Expect = 3e-30 Identities = 149/175 (85%) Strand = Plus / Plus Query: 345 tttgttgaagtgcaagcttctgctacaagctcgcaggatagcgtgcaatctgttaccatc 404 |||||||| ||||||||||||||| |||| || |||||||||| ||| |||||||| || Sbjct: 328 tttgttgacgtgcaagcttctgctgcaagttcccaggatagcgagcattctgttactatt 387 Query: 405 aaggcaaagaagccatcctggagtatgggctcatccttccccctgaagaaagcagtaagg 464 |||||||||||| || ||||| |||||||| ||||||||||| |||||||| || | Sbjct: 388 aaggcaaagaaggtctcttggagcatgggctcttccttccccctcaagaaagccacaaag 447 Query: 465 gctcttccaaagattgaaattgacgatgatgacgaactgattgatgaagacagcc 519 | ||||||||||||| | ||||| |||||| |||||||||||||||||||||| Sbjct: 448 ggtcttccaaagattcagattgatgatgattctgaactgattgatgaagacagcc 502
>gb|AY110043.1| Zea mays CL5496_1 mRNA sequence Length = 1258 Score = 186 bits (94), Expect = 5e-44 Identities = 201/240 (83%) Strand = Plus / Plus Query: 25 cggcggcgctcgcggtgacggacgagctggccctgccgatccgcggggtggcggacctgg 84 |||||||||||||||||||||||||| |||||||||||||||| | ||| | |||| Sbjct: 74 cggcggcgctcgcggtgacggacgaggtggccctgccgatccgggcggtnnnnnatctgg 133 Query: 85 cggccgccgccggggtctcgcgggaggaggtcgtcgtcatcacgcagtgcgccacgctcg 144 |||||||||||| |||||||||||||||||||| ||||||||| |||||||| |||||| Sbjct: 134 cggccgccgccgaggtctcgcgggaggaggtcgccgtcatcacccagtgcgcggcgctcg 193 Query: 145 gtgggaagttgccttttgatgacgcgtccgtgggttctgttctttctgtcataaaaaatg 204 ||||||||||||||||||| || || || || ||| | |||||| | ||||| | Sbjct: 194 gtgggaagttgccttttgaagatgcatcagttggtgcggttcttgcagtcattnnnnncg 253 Query: 205 tggagagctttggggataagttggttgctgaaattagccgagtgctgaaagctggtggaa 264 |||| ||||| |||| | |||||||||||||| || || ||||||||||||||||||| Sbjct: 254 tggaaagcttgagggagcaattggttgctgaaatcagtcgggtgctgaaagctggtggaa 313 Score = 125 bits (63), Expect = 2e-25 Identities = 180/219 (82%) Strand = Plus / Plus Query: 299 tcagaagccaaacaattatatcgagcgccagctactcatgggtggttttgttgaagtgca 358 ||||||||| |||| | | || |||||| || |||| |||||||| |||| ||||||||| Sbjct: 348 tcagaagccgaacactgaaattgagcgcaagttactgatgggtggatttgctgaagtgca 407 Query: 359 agcttctgctacaagctcgcaggatagcgtgcaatctgttaccatcaaggcaaagaagcc 418 | |||||||| ||| ||||||||||||||||||||||||||| | |||||||||||| | Sbjct: 408 atcttctgctgcaaactcgcaggatagcgtgcaatctgttacagttaaggcaaagaaggc 467 Query: 419 atcctggagtatgggctcatccttccccctgaagaaagcagtaagggctcttccaaagat 478 |||||| |||||||| || || ||||| |||||| || || || ||||| ||||| Sbjct: 468 tagctggagcatgggctcttcttttccccttaagaaaacaacaaaagcccttcccaagat 527 Query: 479 tgaaattgacgatgatgacgaactgattgatgaagacag 517 | |||||||||| || || ||||||||||||||||| Sbjct: 528 tcaaattgacgacgactctgatctgattgatgaagacag 566
>emb|AL732344.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0403D02, complete sequence Length = 138387 Score = 163 bits (82), Expect = 7e-37 Identities = 121/134 (90%) Strand = Plus / Plus Query: 14 ggcgacggctgcggcggcgctcgcggtgacggacgagctggccctgccgatccgcggggt 73 ||||||||| |||||||||||||||||||||||||| |||||| ||||| | |||| ||| Sbjct: 80299 ggcgacggcggcggcggcgctcgcggtgacggacgaactggccttgccgcttcgcgcggt 80358 Query: 74 ggcggacctggcggccgccgccggggtctcgcgggaggaggtcgtcgtcatcacgcagtg 133 || ||| |||||||||||||| |||||||||||||||||||| || |||||||||||||| Sbjct: 80359 gggggatctggcggccgccgcgggggtctcgcgggaggaggtggtggtcatcacgcagtg 80418 Query: 134 cgccacgctcggtg 147 |||| |||| |||| Sbjct: 80419 cgcctcgcttggtg 80432 Score = 85.7 bits (43), Expect = 1e-13 Identities = 97/115 (84%) Strand = Plus / Plus Query: 405 aaggcaaagaagccatcctggagtatgggctcatccttccccctgaagaaagcagtaagg 464 |||||||||||| | || ||||| |||||||| ||||||||||| |||||||| || | Sbjct: 81481 aaggcaaagaaggcctcttggagcatgggctcttccttccccctcaagaaagccacaaag 81540 Query: 465 gctcttccaaagattgaaattgacgatgatgacgaactgattgatgaagacagcc 519 | ||||||||||||| | ||||| ||||| |||||||||||||||||||||| Sbjct: 81541 ggtcttccaaagattcagattgatgatgactctgaactgattgatgaagacagcc 81595 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 312 aattatatcgagcgccagctactcatgggtggttttgttgaagtgcaagcttctgctaca 371 |||| ||| |||||| ||||||| | || || |||||||| ||||||||||||||| || Sbjct: 81309 aattctattgagcgcaagctactgttaggaggatttgttgacgtgcaagcttctgctgca 81368 Query: 372 agctcgcaggata 384 || |||||||||| Sbjct: 81369 agttcgcaggata 81381 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 144 ggtgggaagttgccttttgatgacgcgtccgtgggttctgttctttctgtcat 196 ||||||||||||||||||| ||| || || || |||||||||||| ||||||| Sbjct: 81068 ggtgggaagttgccttttgctgatgcatcagttggttctgttcttgctgtcat 81120
>emb|AL606457.3|OSJN00002 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0018M05, complete sequence Length = 164943 Score = 147 bits (74), Expect = 4e-32 Identities = 119/134 (88%) Strand = Plus / Plus Query: 14 ggcgacggctgcggcggcgctcgcggtgacggacgagctggccctgccgatccgcggggt 73 |||||||| |||| ||||||||||||||||||||| |||||| ||||| | |||| ||| Sbjct: 76466 ggcgacggtggcggaggcgctcgcggtgacggacgaactggccttgccgcttcgcgcggt 76525 Query: 74 ggcggacctggcggccgccgccggggtctcgcgggaggaggtcgtcgtcatcacgcagtg 133 || ||| |||||||||||||| |||||||||||||||||||| || |||||||||||||| Sbjct: 76526 gggggatctggcggccgccgcgggggtctcgcgggaggaggtggtggtcatcacgcagtg 76585 Query: 134 cgccacgctcggtg 147 |||| |||| |||| Sbjct: 76586 cgcctcgcttggtg 76599 Score = 77.8 bits (39), Expect = 3e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 405 aaggcaaagaagccatcctggagtatgggctcatccttccccctgaagaaagcagtaagg 464 |||||||||||| || ||||| ||||||| ||||||||||| |||||||| || | Sbjct: 77658 aaggcaaagaaggtctcttggagcttgggctcttccttccccctcaagaaagccacaaag 77717 Query: 465 gctcttccaaagattgaaattgacgatgatgacgaactgattgatgaagacagcc 519 | ||||||||||||| | ||||| |||||| |||||||||||||||||||||| Sbjct: 77718 ggtcttccaaagattcagattgatgatgattctgaactgattgatgaagacagcc 77772 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 345 tttgttgaagtgcaagcttctgctacaagctcgcaggatagcgtgcaatctgttac 400 |||||||| ||||||||||||||| |||| || |||||||||| ||| |||||||| Sbjct: 77520 tttgttgacgtgcaagcttctgctgcaagttcccaggatagcgagcattctgttac 77575 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 144 ggtgggaagttgccttttgatgacgcgtccgtgggttctgttctttctgtcat 196 ||||||||||| ||||||||||| || || || |||||||||||| ||||||| Sbjct: 77245 ggtgggaagttaccttttgatgatgcatcagttggttctgttcttgctgtcat 77297
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 147 bits (74), Expect = 4e-32 Identities = 119/134 (88%) Strand = Plus / Plus Query: 14 ggcgacggctgcggcggcgctcgcggtgacggacgagctggccctgccgatccgcggggt 73 |||||||| |||| ||||||||||||||||||||| |||||| ||||| | |||| ||| Sbjct: 34458981 ggcgacggtggcggaggcgctcgcggtgacggacgaactggccttgccgcttcgcgcggt 34459040 Query: 74 ggcggacctggcggccgccgccggggtctcgcgggaggaggtcgtcgtcatcacgcagtg 133 || ||| |||||||||||||| |||||||||||||||||||| || |||||||||||||| Sbjct: 34459041 gggggatctggcggccgccgcgggggtctcgcgggaggaggtggtggtcatcacgcagtg 34459100 Query: 134 cgccacgctcggtg 147 |||| |||| |||| Sbjct: 34459101 cgcctcgcttggtg 34459114 Score = 145 bits (73), Expect = 2e-31 Identities = 109/121 (90%) Strand = Plus / Minus Query: 27 gcggcgctcgcggtgacggacgagctggccctgccgatccgcggggtggcggacctggcg 86 ||||||||||||||||||||||||||||| ||||| |||||| ||||| ||| |||||| Sbjct: 34858017 gcggcgctcgcggtgacggacgagctggcgttgccgctccgcgcggtgggggatctggcg 34857958 Query: 87 gccgccgccggggtctcgcgggaggaggtcgtcgtcatcacgcagtgcgccacgctcggt 146 |||||||| ||| |||||||||||||||| || |||||||||||||||||| |||| ||| Sbjct: 34857957 gccgccgcggggttctcgcgggaggaggtggtggtcatcacgcagtgcgcctcgcttggt 34857898 Query: 147 g 147 | Sbjct: 34857897 g 34857897 Score = 85.7 bits (43), Expect = 1e-13 Identities = 97/115 (84%) Strand = Plus / Minus Query: 405 aaggcaaagaagccatcctggagtatgggctcatccttccccctgaagaaagcagtaagg 464 |||||||||||| || ||||| |||||||| ||||||||||| |||||||| || | Sbjct: 34856835 aaggcaaagaaggtctcttggagcatgggctcttccttccccctcaagaaagccacaaag 34856776 Query: 465 gctcttccaaagattgaaattgacgatgatgacgaactgattgatgaagacagcc 519 | ||||||||||||| | ||||| |||||| |||||||||||||||||||||| Sbjct: 34856775 ggtcttccaaagattcagattgatgatgattctgaactgattgatgaagacagcc 34856721 Score = 77.8 bits (39), Expect = 3e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 405 aaggcaaagaagccatcctggagtatgggctcatccttccccctgaagaaagcagtaagg 464 |||||||||||| || ||||| ||||||| ||||||||||| |||||||| || | Sbjct: 34460173 aaggcaaagaaggtctcttggagcttgggctcttccttccccctcaagaaagccacaaag 34460232 Query: 465 gctcttccaaagattgaaattgacgatgatgacgaactgattgatgaagacagcc 519 | ||||||||||||| | ||||| |||||| |||||||||||||||||||||| Sbjct: 34460233 ggtcttccaaagattcagattgatgatgattctgaactgattgatgaagacagcc 34460287 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 345 tttgttgaagtgcaagcttctgctacaagctcgcaggatagcgtgcaatctgttac 400 |||||||| ||||||||||||||| |||| || |||||||||| ||| |||||||| Sbjct: 34856973 tttgttgacgtgcaagcttctgctgcaagttcccaggatagcgagcattctgttac 34856918 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 345 tttgttgaagtgcaagcttctgctacaagctcgcaggatagcgtgcaatctgttac 400 |||||||| ||||||||||||||| |||| || |||||||||| ||| |||||||| Sbjct: 34460035 tttgttgacgtgcaagcttctgctgcaagttcccaggatagcgagcattctgttac 34460090 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 144 ggtgggaagttgccttttgatgacgcgtccgtgggttctgttctttctgtcat 196 ||||||||||| ||||||||||| || || || |||||||||||| ||||||| Sbjct: 34857248 ggtgggaagttaccttttgatgatgcatcagttggttctgttcttgctgtcat 34857196 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 144 ggtgggaagttgccttttgatgacgcgtccgtgggttctgttctttctgtcat 196 ||||||||||| ||||||||||| || || || |||||||||||| ||||||| Sbjct: 34459760 ggtgggaagttaccttttgatgatgcatcagttggttctgttcttgctgtcat 34459812
>emb|AL606641.3|OSJN00074 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032F06, complete sequence Length = 148023 Score = 145 bits (73), Expect = 2e-31 Identities = 109/121 (90%) Strand = Plus / Minus Query: 27 gcggcgctcgcggtgacggacgagctggccctgccgatccgcggggtggcggacctggcg 86 ||||||||||||||||||||||||||||| ||||| |||||| ||||| ||| |||||| Sbjct: 64130 gcggcgctcgcggtgacggacgagctggcgttgccgctccgcgcggtgggggatctggcg 64071 Query: 87 gccgccgccggggtctcgcgggaggaggtcgtcgtcatcacgcagtgcgccacgctcggt 146 |||||||| ||| |||||||||||||||| || |||||||||||||||||| |||| ||| Sbjct: 64070 gccgccgcggggttctcgcgggaggaggtggtggtcatcacgcagtgcgcctcgcttggt 64011 Query: 147 g 147 | Sbjct: 64010 g 64010 Score = 85.7 bits (43), Expect = 1e-13 Identities = 97/115 (84%) Strand = Plus / Minus Query: 405 aaggcaaagaagccatcctggagtatgggctcatccttccccctgaagaaagcagtaagg 464 |||||||||||| || ||||| |||||||| ||||||||||| |||||||| || | Sbjct: 62948 aaggcaaagaaggtctcttggagcatgggctcttccttccccctcaagaaagccacaaag 62889 Query: 465 gctcttccaaagattgaaattgacgatgatgacgaactgattgatgaagacagcc 519 | ||||||||||||| | ||||| |||||| |||||||||||||||||||||| Sbjct: 62888 ggtcttccaaagattcagattgatgatgattctgaactgattgatgaagacagcc 62834 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 345 tttgttgaagtgcaagcttctgctacaagctcgcaggatagcgtgcaatctgttac 400 |||||||| ||||||||||||||| |||| || |||||||||| ||| |||||||| Sbjct: 63086 tttgttgacgtgcaagcttctgctgcaagttcccaggatagcgagcattctgttac 63031 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 144 ggtgggaagttgccttttgatgacgcgtccgtgggttctgttctttctgtcat 196 ||||||||||| ||||||||||| || || || |||||||||||| ||||||| Sbjct: 63361 ggtgggaagttaccttttgatgatgcatcagttggttctgttcttgctgtcat 63309
>emb|AL732352.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0124B04, complete sequence Length = 115564 Score = 145 bits (73), Expect = 2e-31 Identities = 109/121 (90%) Strand = Plus / Minus Query: 27 gcggcgctcgcggtgacggacgagctggccctgccgatccgcggggtggcggacctggcg 86 |||||||||||||||||||||||||| || ||||| |||||| ||||| ||| |||||| Sbjct: 37663 gcggcgctcgcggtgacggacgagctagcgttgccgctccgcgcggtgggggatctggcg 37604 Query: 87 gccgccgccggggtctcgcgggaggaggtcgtcgtcatcacgcagtgcgccacgctcggt 146 |||||||| |||||||||||||||||||| || |||||||||||||||||| |||| ||| Sbjct: 37603 gccgccgcgggggtctcgcgggaggaggtggtggtcatcacgcagtgcgcctcgcttggt 37544 Query: 147 g 147 | Sbjct: 37543 g 37543 Score = 85.7 bits (43), Expect = 1e-13 Identities = 97/115 (84%) Strand = Plus / Minus Query: 405 aaggcaaagaagccatcctggagtatgggctcatccttccccctgaagaaagcagtaagg 464 |||||||||||| || ||||| |||||||| ||||||||||| |||||||| || | Sbjct: 36481 aaggcaaagaaggtctcttggagcatgggctcttccttccccctcaagaaagccacaaag 36422 Query: 465 gctcttccaaagattgaaattgacgatgatgacgaactgattgatgaagacagcc 519 | ||||||||||||| | ||||| |||||| |||||||||||||||||||||| Sbjct: 36421 ggtcttccaaagattcagattgatgatgattctgaactgattgatgaagacagcc 36367 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 345 tttgttgaagtgcaagcttctgctacaagctcgcaggatagcgtgcaatctgttac 400 |||||||| ||||||||||||||| |||| || |||||||||| ||| |||||||| Sbjct: 36619 tttgttgacgtgcaagcttctgctgcaagttcccaggatagcgagcattctgttac 36564 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 144 ggtgggaagttgccttttgatgacgcgtccgtgggttctgttctttctgtcat 196 ||||||||||| ||||||||||| || || || |||||||||||| ||||||| Sbjct: 36894 ggtgggaagttaccttttgatgatgcatcagttggttctgttcttgctgtcat 36842
>emb|AL732354.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0901F07, complete sequence Length = 110682 Score = 85.7 bits (43), Expect = 1e-13 Identities = 97/115 (84%) Strand = Plus / Minus Query: 405 aaggcaaagaagccatcctggagtatgggctcatccttccccctgaagaaagcagtaagg 464 |||||||||||| || ||||| |||||||| ||||||||||| |||||||| || | Sbjct: 110557 aaggcaaagaaggtctcttggagcatgggctcttccttccccctcaagaaagccacaaag 110498 Query: 465 gctcttccaaagattgaaattgacgatgatgacgaactgattgatgaagacagcc 519 | ||||||||||||| | ||||| |||||| |||||||||||||||||||||| Sbjct: 110497 ggtcttccaaagattcagattgatgatgattctgaactgattgatgaagacagcc 110443 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Minus Query: 358 aagcttctgctacaagctcgcaggatagcgtgcaatctgttac 400 ||||||||||| |||| || |||||||||| ||| |||||||| Sbjct: 110682 aagcttctgctgcaagttcccaggatagcgagcattctgttac 110640
>emb|AL137251.5| Human DNA sequence from clone RP1-141N5 on chromosome 6 Contains the 3' end of the gene for KIAA1913 protein, complete sequence Length = 122354 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 191 tgtcataaaaaatgtggagagctttg 216 ||||||||||||||||||| |||||| Sbjct: 38184 tgtcataaaaaatgtggagtgctttg 38209
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 124 tcacgcagtgcgccacgctcg 144 ||||||||||||||||||||| Sbjct: 2970940 tcacgcagtgcgccacgctcg 2970920
>emb|Z84480.1|HS418A9 Human DNA sequence from clone RP3-418A9 on chromosome 6q21 Contains a pseudogene similar to calponin proteins, the 5' part of gene KIAA1028 and a CpG island, complete sequence Length = 121424 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 299 tcagaagccaaacaattatat 319 ||||||||||||||||||||| Sbjct: 32850 tcagaagccaaacaattatat 32870
>emb|CR394542.5| Zebrafish DNA sequence from clone DKEY-91I10 in linkage group 9, complete sequence Length = 193811 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 408 gcaaagaagccatcctggagt 428 ||||||||||||||||||||| Sbjct: 517 gcaaagaagccatcctggagt 497
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 78 gacctggcggccgccgccggggtctcgcg 106 ||||||| |||||||||||| |||||||| Sbjct: 887056 gacctggaggccgccgccggcgtctcgcg 887084
>gb|AC016816.5| Homo sapiens chromosome 10 clone RP11-113P9, complete sequence Length = 174311 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 ccccctgaagaaagcagtaag 463 ||||||||||||||||||||| Sbjct: 23130 ccccctgaagaaagcagtaag 23150
>gb|AC027669.11| Homo sapiens chromosome 10 clone RP11-165N2, complete sequence Length = 177135 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 ccccctgaagaaagcagtaag 463 ||||||||||||||||||||| Sbjct: 109741 ccccctgaagaaagcagtaag 109761
>ref|XM_677679.1| PREDICTED: Danio rerio similar to CG32239-PA (LOC555224), partial mRNA Length = 1728 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 408 gcaaagaagccatcctggagt 428 ||||||||||||||||||||| Sbjct: 563 gcaaagaagccatcctggagt 583
>gb|AC157948.5| Mus musculus BAC clone RP23-197K17 from chromosome 7, complete sequence Length = 201846 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 453 aaagcagtaagggctcttcca 473 ||||||||||||||||||||| Sbjct: 46675 aaagcagtaagggctcttcca 46655
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 cggctgcggcggcgctcgcgg 39 ||||||||||||||||||||| Sbjct: 1029895 cggctgcggcggcgctcgcgg 1029875
>gb|AC149283.2| Mus musculus BAC clone RP23-233O21 from 7, complete sequence Length = 223763 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 453 aaagcagtaagggctcttcca 473 ||||||||||||||||||||| Sbjct: 153621 aaagcagtaagggctcttcca 153641
>emb|AL935048.7| Zebrafish DNA sequence from clone CH211-168M7, complete sequence Length = 137662 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 408 gcaaagaagccatcctggagt 428 ||||||||||||||||||||| Sbjct: 3093 gcaaagaagccatcctggagt 3113
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 484 ttgacgatgatgacgaactg 503 |||||||||||||||||||| Sbjct: 17113 ttgacgatgatgacgaactg 17094
>ref|NM_183577.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 291 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 atggcgacggctgcggcggc 31 |||||||||||||||||||| Sbjct: 94 atggcgacggctgcggcggc 113
>ref|XM_508962.1| PREDICTED: Pan troglodytes nuclear matrix transcription factor 4 (LOC451790), mRNA Length = 2757 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 ggcgacggctgcggcggcgc 33 |||||||||||||||||||| Sbjct: 530 ggcgacggctgcggcggcgc 511
>ref|XM_480098.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2538 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 ggcgacggctgcggcggcgc 33 |||||||||||||||||||| Sbjct: 15 ggcgacggctgcggcggcgc 34
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 tggcgacggctgcggcggcg 32 |||||||||||||||||||| Sbjct: 101294 tggcgacggctgcggcggcg 101275
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 15 gcgacggctgcggcggcgctcgcg 38 |||||||| ||||||||||||||| Sbjct: 925754 gcgacggccgcggcggcgctcgcg 925731
>gb|AE008650.1| Rickettsia conorii str. Malish 7, section 82 of 114 of the complete genome Length = 10029 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 ctgctacaagctcgcaggat 383 |||||||||||||||||||| Sbjct: 746 ctgctacaagctcgcaggat 727
>gb|AC137680.10| Mus musculus chromosome 13, clone RP23-454P19, complete sequence Length = 197663 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 453 aaagcagtaagggctcttccaaag 476 |||||| ||||||||||||||||| Sbjct: 9680 aaagcactaagggctcttccaaag 9703
>ref|NM_001039918.1| Homo sapiens zinc finger protein 384 (ZNF384), transcript variant 4, mRNA Length = 3069 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 ggcgacggctgcggcggcgc 33 |||||||||||||||||||| Sbjct: 259 ggcgacggctgcggcggcgc 240
>ref|NM_133476.3| Homo sapiens zinc finger protein 384 (ZNF384), transcript variant 2, mRNA Length = 3117 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 ggcgacggctgcggcggcgc 33 |||||||||||||||||||| Sbjct: 259 ggcgacggctgcggcggcgc 240
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 15 gcgacggctgcggcggcgctcgcg 38 |||||||| ||||||||||||||| Sbjct: 1968393 gcgacggccgcggcggcgctcgcg 1968370
>gb|AC148334.3| Mus musculus BAC clone RP23-213L20 from chromosome 13, complete sequence Length = 207106 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 453 aaagcagtaagggctcttccaaag 476 |||||| ||||||||||||||||| Sbjct: 26532 aaagcactaagggctcttccaaag 26509
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 ggcggcgctcgcggtgacgg 45 |||||||||||||||||||| Sbjct: 165302 ggcggcgctcgcggtgacgg 165321
>gb|AC154605.2| Mus musculus BAC clone RP23-348G3 from chromosome 16, complete sequence Length = 191050 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 aaatgtggagagctttgggg 219 |||||||||||||||||||| Sbjct: 18017 aaatgtggagagctttgggg 17998
>ref|XM_862518.1| PREDICTED: Canis familiaris similar to Zinc finger protein 384 (Nuclear matrix transcription factor 4) (CAG repeat protein 1), transcript variant 10 (LOC486723), mRNA Length = 2013 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 ggcgacggctgcggcggcgc 33 |||||||||||||||||||| Sbjct: 263 ggcgacggctgcggcggcgc 244
>ref|XM_862508.1| PREDICTED: Canis familiaris similar to Zinc finger protein 384 (Nuclear matrix transcription factor 4) (CAG repeat protein 1), transcript variant 9 (LOC486723), mRNA Length = 1929 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 ggcgacggctgcggcggcgc 33 |||||||||||||||||||| Sbjct: 263 ggcgacggctgcggcggcgc 244
>ref|XM_862440.1| PREDICTED: Canis familiaris similar to Zinc finger protein 384 (Nuclear matrix transcription factor 4) (CAG repeat protein 1), transcript variant 3 (LOC486723), mRNA Length = 2061 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 ggcgacggctgcggcggcgc 33 |||||||||||||||||||| Sbjct: 263 ggcgacggctgcggcggcgc 244
>gb|AC105429.3| Homo sapiens chromosome 16 clone RP11-106D4, complete sequence Length = 160582 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 cagtaagggctcttccaaag 476 |||||||||||||||||||| Sbjct: 104589 cagtaagggctcttccaaag 104608
>emb|CT009567.9| Mouse DNA sequence from clone RP23-50H13 on chromosome 16, complete sequence Length = 213704 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 aaatgtggagagctttgggg 219 |||||||||||||||||||| Sbjct: 181466 aaatgtggagagctttgggg 181447
>gb|AC122372.4| Mus musculus BAC clone RP23-463P4 from chromosome 10, complete sequence Length = 183391 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 tgggtggttttgttgaagtg 356 |||||||||||||||||||| Sbjct: 99140 tgggtggttttgttgaagtg 99121
>gb|AC115299.4| Mus musculus BAC clone RP23-444O19 from 13, complete sequence Length = 201296 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 453 aaagcagtaagggctcttccaaag 476 |||||| ||||||||||||||||| Sbjct: 94961 aaagcactaagggctcttccaaag 94984
>gb|AC126793.13| Medicago truncatula clone mth2-17m16, complete sequence Length = 109787 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 476 gattgaaattgacgatgatgacga 499 |||||| ||||||||||||||||| Sbjct: 90754 gattgacattgacgatgatgacga 90731
>gb|CP000087.1| Rickettsia bellii RML369-C, complete genome Length = 1522076 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 ctgctacaagctcgcaggat 383 |||||||||||||||||||| Sbjct: 1314064 ctgctacaagctcgcaggat 1314083
>emb|Y10901.1|CPPHOTORC C.purpureus mRNA for photoreceptor protein, partial Length = 4618 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 caatctgttaccatcaaggc 409 |||||||||||||||||||| Sbjct: 4332 caatctgttaccatcaaggc 4313
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16 Length = 348624 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggggtggcggacctggcg 86 |||||||||||||||||||| Sbjct: 23014 gcggggtggcggacctggcg 23033
>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14 Length = 348866 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggggtggcggacctggcg 86 |||||||||||||||||||| Sbjct: 136228 gcggggtggcggacctggcg 136247
>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12 Length = 349672 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gcggggtggcggacctggcg 86 |||||||||||||||||||| Sbjct: 90351 gcggggtggcggacctggcg 90370
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 15 gcgacggctgcggcggcgctcgcg 38 |||||||| ||||||||||||||| Sbjct: 2408438 gcgacggccgcggcggcgctcgcg 2408461
>emb|CR860618.1| Pongo pygmaeus mRNA; cDNA DKFZp459I2225 (from clone DKFZp459I2225) Length = 2981 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 ggcgacggctgcggcggcgc 33 |||||||||||||||||||| Sbjct: 178 ggcgacggctgcggcggcgc 159
>gb|AC108480.3| Drosophila melanogaster X BAC RP98-2A13 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 175996 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 468 cttccaaagattgaaattga 487 |||||||||||||||||||| Sbjct: 74182 cttccaaagattgaaattga 74201
>dbj|AK095734.1| Homo sapiens cDNA FLJ38415 fis, clone FEBRA2009567, highly similar to Rattus norvegicus clone NP/NMP4 21H nuclear matrix transcription factor mRNA Length = 2320 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 ggcgacggctgcggcggcgc 33 |||||||||||||||||||| Sbjct: 222 ggcgacggctgcggcggcgc 203
>dbj|AB190503.1| Rattus norvegicus pre-mRNA for CSG18, partial cds Length = 1425 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 agaagccatcctggagtatg 431 |||||||||||||||||||| Sbjct: 1322 agaagccatcctggagtatg 1303
>gb|AC006834.3| Caenorhabditis elegans cosmid ZK973, complete sequence Length = 66626 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 488 cgatgatgacgaactgattgatga 511 |||||| ||||||||||||||||| Sbjct: 58980 cgatgaagacgaactgattgatga 58957
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 91 ccgccggggtctcgcgggaggagg 114 ||||||||| |||||||||||||| Sbjct: 1810171 ccgccggggactcgcgggaggagg 1810194
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 480 gaaattgacgatgatgacga 499 |||||||||||||||||||| Sbjct: 2423051 gaaattgacgatgatgacga 2423070
>ref|NM_058960.2| Caenorhabditis elegans ZK973.11 (thioredoxin) mRNA, complete cds Length = 1645 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 488 cgatgatgacgaactgattgatga 511 |||||| ||||||||||||||||| Sbjct: 1388 cgatgaagacgaactgattgatga 1411
>ref|NM_058959.3| Caenorhabditis elegans ZK973.2 (ZK973.2) mRNA, complete cds Length = 3154 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 488 cgatgatgacgaactgattgatga 511 |||||| ||||||||||||||||| Sbjct: 3046 cgatgaagacgaactgattgatga 3023
>gb|AY007564.1| Saccharopolyspora spinosa probable lysR-type transcriptional regulator, probable keto acyl reductase, spinosad biosynthetic gene cluster, complete sequence, and probable exodeoxyribonuclease V genes, complete cds; and unknown gene Length = 80161 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 ctggcggccgccgccggggt 100 |||||||||||||||||||| Sbjct: 37723 ctggcggccgccgccggggt 37742
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 ggcgacggctgcggcggcgc 33 |||||||||||||||||||| Sbjct: 2758797 ggcgacggctgcggcggcgc 2758778
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 atggcgacggctgcggcggc 31 |||||||||||||||||||| Sbjct: 10398218 atggcgacggctgcggcggc 10398199
>gb|AC010531.8| Homo sapiens chromosome 16 clone RP11-178L8, complete sequence Length = 175051 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 cagtaagggctcttccaaag 476 |||||||||||||||||||| Sbjct: 129748 cagtaagggctcttccaaag 129729
>gb|AC154724.2| Mus musculus BAC clone RP23-125I9 from chromosome 14, complete sequence Length = 177085 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 ggtggaattgtgctggcaca 277 |||||||||||||||||||| Sbjct: 44105 ggtggaattgtgctggcaca 44124
>gb|AC125494.2| Homo sapiens 12 PAC RP4-761J14 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 143979 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 ggcgacggctgcggcggcgc 33 |||||||||||||||||||| Sbjct: 109312 ggcgacggctgcggcggcgc 109293
>dbj|AP002480.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0469E05 Length = 160769 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 atggcgacggctgcggcggc 31 |||||||||||||||||||| Sbjct: 43178 atggcgacggctgcggcggc 43159
>gb|AE004628.1| Pseudomonas aeruginosa PAO1, section 189 of 529 of the complete genome Length = 10962 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 73 tggcggacctggcggccgccgccggggt 100 |||| |||||||||| |||||||||||| Sbjct: 7679 tggccgacctggcggacgccgccggggt 7706
>gb|AF073776.1|AF073776 Pseudomonas aeruginosa MexZ (mexZ), complete cds; and mexGH operon, complete sequence Length = 5138 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 73 tggcggacctggcggccgccgccggggt 100 |||| |||||||||| |||||||||||| Sbjct: 533 tggccgacctggcggacgccgccggggt 506
>dbj|AP002070.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0511C01 Length = 170402 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 atggcgacggctgcggcggc 31 |||||||||||||||||||| Sbjct: 104938 atggcgacggctgcggcggc 104919
>gb|AF147719.1|AF147719 Pseudomonas aeruginosa transcriptional regulator (amrR), putative membrane fusion protein (amrA), and putative RND transporter (amrB) genes, complete cds Length = 6000 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 73 tggcggacctggcggccgccgccggggt 100 |||| |||||||||| |||||||||||| Sbjct: 755 tggccgacctggcggacgccgccggggt 728
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 gcggacctggcggccgccgccggg 98 ||||| |||||||||||||||||| Sbjct: 3022953 gcggatctggcggccgccgccggg 3022930
>dbj|AP005741.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0470H09 Length = 141257 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 ggcgacggctgcggcggcgc 33 |||||||||||||||||||| Sbjct: 137078 ggcgacggctgcggcggcgc 137059
>dbj|AP005740.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0015A04 Length = 152058 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 ggcgacggctgcggcggcgc 33 |||||||||||||||||||| Sbjct: 21946 ggcgacggctgcggcggcgc 21927
>emb|AL626767.15| Mouse DNA sequence from clone RP23-421C7 on chromosome 4, complete sequence Length = 199694 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 tggagagctttggggataag 224 |||||||||||||||||||| Sbjct: 152855 tggagagctttggggataag 152836
>dbj|AK108858.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-B05, full insert sequence Length = 1059 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 atggcgacggctgcggcggc 31 |||||||||||||||||||| Sbjct: 206 atggcgacggctgcggcggc 225
>emb|AL359400.4|CNS05TEW Human chromosome 14 DNA sequence BAC R-114L12 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 175668 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 250 tgaaagctggtggaattgtgctgg 273 ||||||| |||||||||||||||| Sbjct: 166638 tgaaagcaggtggaattgtgctgg 166661
>gb|AF116283.1|AF116283 Pseudomonas aeruginosa membrane fusion protein (mexG) gene, partial cds; and putative multidrug efflux pump regulator (mexZ) gene, complete cds Length = 1512 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 73 tggcggacctggcggccgccgccggggt 100 |||| |||||||||| |||||||||||| Sbjct: 556 tggccgacctggcggacgccgccggggt 583
>gb|AE003427.3| Drosophila melanogaster chromosome X, section 11 of 74 of the complete sequence Length = 213230 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 cttccaaagattgaaattga 487 |||||||||||||||||||| Sbjct: 130234 cttccaaagattgaaattga 130215
>dbj|AP000760.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-779L16, complete sequence Length = 177490 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 ttctttctgtcataaaaaat 203 |||||||||||||||||||| Sbjct: 43631 ttctttctgtcataaaaaat 43612
>dbj|AP002378.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-351D3, complete sequence Length = 177432 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 ttctttctgtcataaaaaat 203 |||||||||||||||||||| Sbjct: 142048 ttctttctgtcataaaaaat 142029
>emb|CT033778.16| Mouse DNA sequence from clone RP23-424G4 on chromosome 14, complete sequence Length = 184788 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 ggtggaattgtgctggcaca 277 |||||||||||||||||||| Sbjct: 157111 ggtggaattgtgctggcaca 157130
>emb|AL355112.4|CNS05TCB Human chromosome 14 DNA sequence BAC R-159D23 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 147454 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 250 tgaaagctggtggaattgtgctgg 273 ||||||| |||||||||||||||| Sbjct: 7662 tgaaagcaggtggaattgtgctgg 7685
>gb|U30821.1|CPU30821 Cyanophora paradoxa cyanelle, complete genome Length = 135599 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 atgggtggttttgttgaagt 355 |||||||||||||||||||| Sbjct: 94906 atgggtggttttgttgaagt 94925 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,125,902 Number of Sequences: 3902068 Number of extensions: 5125902 Number of successful extensions: 108049 Number of sequences better than 10.0: 84 Number of HSP's better than 10.0 without gapping: 84 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 106565 Number of HSP's gapped (non-prelim): 1481 length of query: 519 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 496 effective length of database: 17,143,297,704 effective search space: 8503075661184 effective search space used: 8503075661184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)