>TRUD_VIBPA (Q87LQ4) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine|
           isomerase D) (tRNA pseudouridylate synthase D)
          Length = 347

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = -3

Query: 576 LRPEVALCDVAVEHVLAAERRLEVRGRLVALEEGVEGREPEALAVEEGQRL 424
           ++ ++AL +V +   LA +  L  +   +ALE+     EP+ +A+  G R+
Sbjct: 245 MQNKLALSEVEITAALAGDNALPTQADALALEQPFIDEEPDLMALIRGNRM 295


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,580,633
Number of Sequences: 219361
Number of extensions: 637386
Number of successful extensions: 2598
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2597
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)