ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart48d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PA21B_HORSE (P00594) Phospholipase A2 precursor (EC 3.1.1.4) (Ph... 31 3.1
2Y2082_MYCTU (Q10690) Hypothetical protein Rv2082 30 5.3
3GLO2O_ARATH (Q9C8L4) Putative hydroxyacylglutathione hydrolase 3... 30 6.9

>PA21B_HORSE (P00594) Phospholipase A2 precursor (EC 3.1.1.4)|
           (Phosphatidylcholine 2-acylhydrolase) (Group IB
           phospholipase A2) [Contains: Phospholipase A2 isoform 2]
           (Fragment)
          Length = 132

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 345 SPCLESYRFASDSCVLPCSEN*NKCFACW*F*MCEVCLCVRGPVLCF 485
           +P  ESY+F+     + CS+  N C A        +C C R   +CF
Sbjct: 74  NPYTESYKFSCSGTEVTCSDKNNACEAF-------ICNCDRNAAICF 113



to top

>Y2082_MYCTU (Q10690) Hypothetical protein Rv2082|
          Length = 721

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -2

Query: 300 TPASDPPDTLGPLGRISTCSCTAGAGADLGASLTPVRPQPATRSTRPKN 154
           TP + PP   GP+   +    +  AG  L + +      PAT   +P N
Sbjct: 437 TPPATPPTPTGPISGAAVTPSSPAAGGSLMSPVVNKSTAPATTQAQPSN 485



to top

>GLO2O_ARATH (Q9C8L4) Putative hydroxyacylglutathione hydrolase 3, mitochondrial|
           precursor (EC 3.1.2.6) (Glyoxalase II) (Glx II)
          Length = 256

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
 Frame = +2

Query: 50  VQIPDQKTSVHCTPVPTSAFASTIMANFATQLKDR--FFGLVDRVAGCGRTGVKEAPKSA 223
           V I D    V  TP  T+   + +    A Q + R  F G    + GCGRT  +E     
Sbjct: 113 VSIGDIYLEVRATPGHTAGCVTYVTGEGADQPQPRMAFTGDAVLIRGCGRTDFQEGSSDQ 172

Query: 224 PAPAVHEHVEIRPR 265
              +VH  +   P+
Sbjct: 173 LYESVHSQIFTLPK 186


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,233,867
Number of Sequences: 219361
Number of extensions: 1420367
Number of successful extensions: 4250
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4249
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top