ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart48c08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197074.1| Oryza sativa (japonica cultivar-group) unknown ... 50 0.006
2gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C15 gen... 50 0.006
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
4gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 50 0.006
5ref|XM_483127.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.35
6ref|NM_187684.1| Oryza sativa (japonica cultivar-group), predic... 44 0.35
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.35
8gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.35
9dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
10dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
11dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 44 0.35
12dbj|AP005148.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
13dbj|AK098871.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.35
14dbj|AK098866.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.35
15dbj|AK067131.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.35
16dbj|AK060765.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.35
17ref|XM_467892.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
18gb|BT018874.1| Zea mays clone EL01N0563E02.d mRNA sequence 42 1.4
19gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 42 1.4
20gb|AC125780.2| Oryza sativa (japonica culitvar-group) chromosome... 42 1.4
21gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 42 1.4
22gb|AC121327.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
23gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 42 1.4
24dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
25dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
26dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
27ref|XM_317470.2| Anopheles gambiae str. PEST ENSANGP00000012304 ... 42 1.4
28dbj|AK111266.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
29gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 42 1.4
30gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
31ref|XM_550580.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.4
32ref|NM_185475.2| Oryza sativa (japonica cultivar-group), mRNA 40 5.4
33ref|XM_482082.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.4
34ref|XM_476160.1| Oryza sativa (japonica cultivar-group), predic... 40 5.4
35ref|XM_463353.1| Oryza sativa (japonica cultivar-group), predic... 40 5.4
36ref|XM_473503.1| Oryza sativa (japonica cultivar-group), predic... 40 5.4
37ref|XM_366102.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 5.4
38gb|AC136226.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.4
39gb|AC127549.3| Mus musculus BAC clone RP24-510G5 from chromosome... 40 5.4
40emb|CR380952.1| Candida glabrata strain CBS138 chromosome F comp... 40 5.4
41emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete ... 40 5.4
42emb|AL606694.3|OSJN00110 Oryza sativa genomic DNA, chromosome 4,... 40 5.4
43gb|AC115847.19| Mus musculus chromosome 5, clone RP24-245J15, co... 40 5.4
44dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
45dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
46dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
47dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
48gb|AE004834.1| Pseudomonas aeruginosa PAO1, section 395 of 529 o... 40 5.4
49gb|AC017004.4| Homo sapiens BAC clone RP11-88C6 from 2, complete... 40 5.4
50dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
51dbj|AP004877.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
52dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
53dbj|AP003332.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
54dbj|AP004397.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
55dbj|AP003962.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
56dbj|AK106449.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.4
57dbj|AK072348.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.4
58dbj|AK065280.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.4
59dbj|AB248874.1| Streptomyces albulus sttH genes for hypothetical... 40 5.4
60dbj|AB041884.1| Pseudomonas sp. E-3 metH', him genes for 9-hexad... 40 5.4 
>ref|NM_197074.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0029C15.6), mRNA
          Length = 2184

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 95  cgtcctcctgctgctcgtcgtcgtc 119
           |||||||||||||||||||||||||
Sbjct: 56  cgtcctcctgctgctcgtcgtcgtc 80
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>gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C15 genomic sequence, complete
              sequence
          Length = 148816

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 95     cgtcctcctgctgctcgtcgtcgtc 119
              |||||||||||||||||||||||||
Sbjct: 103979 cgtcctcctgctgctcgtcgtcgtc 103955
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                         
Query: 95       cgtcctcctgctgctcgtcgtcgtc 119
                |||||||||||||||||||||||||
Sbjct: 17828062 cgtcctcctgctgctcgtcgtcgtc 17828086
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                         
Query: 95       cgtcctcctgctgctcgtcgtcgtc 119
                |||||||||||||||||||||||||
Sbjct: 17837315 cgtcctcctgctgctcgtcgtcgtc 17837339
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>ref|XM_483127.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 396

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 88  tcgccggcgtcctcctgctgctcgtcgtcg 117
           ||||||||||| |||||||||||| |||||
Sbjct: 104 tcgccggcgtcatcctgctgctcggcgtcg 133
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>ref|NM_187684.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2532

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 85  tcctcgccggcgtcctcctgctgctc 110
           |||||| |||||||||||||||||||
Sbjct: 5   tcctcgtcggcgtcctcctgctgctc 30
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 85      tcctcgccggcgtcctcctgctgctc 110
               |||||| |||||||||||||||||||
Sbjct: 6345743 tcctcgtcggcgtcctcctgctgctc 6345768
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>gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09,
             complete sequence
          Length = 146568

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 85    tcctcgccggcgtcctcctgctgctc 110
             |||||| |||||||||||||||||||
Sbjct: 25869 tcctcgtcggcgtcctcctgctgctc 25894
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 88       tcgccggcgtcctcctgctgctcgtcgtcg 117
                ||||||||||| |||||||||||| |||||
Sbjct: 24407311 tcgccggcgtcatcctgctgctcggcgtcg 24407340



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 88       tcgccggcgtcctcctgctgctcg 111
                ||||||||||| ||||||||||||
Sbjct: 17644764 tcgccggcgtcatcctgctgctcg 17644741
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 85      tcctcgccggcgtcctcctgctgctc 110
               |||||| |||||||||||||||||||
Sbjct: 6344956 tcctcgtcggcgtcctcctgctgctc 6344981
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 102     ctgctgctcgtcgtcgtcgcgc 123
               ||||||||||||||||||||||
Sbjct: 2430294 ctgctgctcgtcgtcgtcgcgc 2430315



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 99      ctcctgctgctcgtcgtcgtcgcg 122
               |||||||||||||||||| |||||
Sbjct: 2755626 ctcctgctgctcgtcgtcttcgcg 2755649
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>dbj|AP005148.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1142B04
          Length = 161964

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 88    tcgccggcgtcctcctgctgctcgtcgtcg 117
             ||||||||||| |||||||||||| |||||
Sbjct: 23027 tcgccggcgtcatcctgctgctcggcgtcg 23056
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>dbj|AK098871.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001B07, full
           insert sequence
          Length = 2756

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 85  tcctcgccggcgtcctcctgctgctc 110
           |||||| |||||||||||||||||||
Sbjct: 43  tcctcgtcggcgtcctcctgctgctc 68
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>dbj|AK098866.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A09, full
           insert sequence
          Length = 2770

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 85  tcctcgccggcgtcctcctgctgctc 110
           |||||| |||||||||||||||||||
Sbjct: 50  tcctcgtcggcgtcctcctgctgctc 75
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>dbj|AK067131.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095L11, full
            insert sequence
          Length = 2728

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 85   tcctcgccggcgtcctcctgctgctc 110
            |||||| |||||||||||||||||||
Sbjct: 2396 tcctcgtcggcgtcctcctgctgctc 2371
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>dbj|AK060765.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-A08, full
           insert sequence
          Length = 2830

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 85  tcctcgccggcgtcctcctgctgctc 110
           |||||| |||||||||||||||||||
Sbjct: 49  tcctcgtcggcgtcctcctgctgctc 74
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>ref|XM_467892.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1032

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 93  ggcgtcctcctgctgctcgtcgtcg 117
           |||||| ||||||||||||||||||
Sbjct: 276 ggcgtcgtcctgctgctcgtcgtcg 300
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>gb|BT018874.1| Zea mays clone EL01N0563E02.d mRNA sequence
          Length = 1646

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 90  gccggcgtcctcctgctgctcgtcgtcgt 118
           ||||||||||| |||||||||| ||||||
Sbjct: 44  gccggcgtcctgctgctgctcgccgtcgt 72
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 106     tgctcgtcgtcgtcgcgcagc 126
               |||||||||||||||||||||
Sbjct: 2859134 tgctcgtcgtcgtcgcgcagc 2859154
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>gb|AC125780.2| Oryza sativa (japonica culitvar-group) chromosome 11 BAC clone
             OSJNBa0030I15, complete sequence
          Length = 148498

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 88    tcgccggcgtcctcctgctgctcgtcgtc 116
             ||||||||||| |||||||||||| ||||
Sbjct: 23975 tcgccggcgtcatcctgctgctcggcgtc 23947
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 85      tcctcgccggcgtcctcctgctgct 109
               |||||| ||||||||||||||||||
Sbjct: 1725552 tcctcgtcggcgtcctcctgctgct 1725528
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>gb|AC121327.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0016O23, complete sequence
          Length = 149400

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 88     tcgccggcgtcctcctgctgctcgtcgtc 116
              ||||||||||| |||||||||||| ||||
Sbjct: 144923 tcgccggcgtcatcctgctgctcggcgtc 144895
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 120     gcgcagctcgctggcgcccag 140
               |||||||||||||||||||||
Sbjct: 4234415 gcgcagctcgctggcgcccag 4234395
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 88       tcgccggcgtcctcctgctgctcgtcgtc 116
                ||||||||||| |||||||||||| ||||
Sbjct: 23956108 tcgccggcgtcatcctgctgctcggcgtc 23956080
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 93       ggcgtcctcctgctgctcgtcgtcg 117
                |||||| ||||||||||||||||||
Sbjct: 31951534 ggcgtcgtcctgctgctcgtcgtcg 31951510



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 106      tgctcgtcgtcgtcgcgcag 125
                ||||||||||||||||||||
Sbjct: 20215239 tgctcgtcgtcgtcgcgcag 20215220
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>dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0471A11
          Length = 157740

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 93     ggcgtcctcctgctgctcgtcgtcg 117
              |||||| ||||||||||||||||||
Sbjct: 112535 ggcgtcgtcctgctgctcgtcgtcg 112511
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>ref|XM_317470.2| Anopheles gambiae str. PEST ENSANGP00000012304 (ENSANGG00000009815),
            partial mRNA
          Length = 4083

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 99   ctcctgctgctcgtcgtcgtc 119
            |||||||||||||||||||||
Sbjct: 2958 ctcctgctgctcgtcgtcgtc 2938
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>dbj|AK111266.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-180-F07, full
           insert sequence
          Length = 1032

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 93  ggcgtcctcctgctgctcgtcgtcg 117
           |||||| ||||||||||||||||||
Sbjct: 276 ggcgtcgtcctgctgctcgtcgtcg 300
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 102     ctgctgctcgtcgtcgtcgcg 122
               |||||||||||||||||||||
Sbjct: 1297439 ctgctgctcgtcgtcgtcgcg 1297459
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 88       tcgccggcgtcctcctgctgctcgtcgtc 116
                ||||||||||| |||||||||||| ||||
Sbjct: 24267777 tcgccggcgtcatcctgctgctcggcgtc 24267749
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>ref|XM_550580.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 465

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 101 cctgctgctcgtcgtcgtcg 120
           ||||||||||||||||||||
Sbjct: 58  cctgctgctcgtcgtcgtcg 39
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>ref|NM_185475.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3084

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 101 cctgctgctcgtcgtcgtcg 120
           ||||||||||||||||||||
Sbjct: 256 cctgctgctcgtcgtcgtcg 275
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>ref|XM_482082.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3262

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 88   tcgccggcgtcctcctgctgctcg 111
            ||||||||||| ||||||||||||
Sbjct: 1883 tcgccggcgtcatcctgctgctcg 1906
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>ref|XM_476160.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 630

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 106 tgctcgtcgtcgtcgcgcagctcg 129
           ||||||||||||||| ||||||||
Sbjct: 371 tgctcgtcgtcgtcgagcagctcg 348
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>ref|XM_463353.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 600

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 109 tcgtcgtcgtcgcgcagctc 128
           ||||||||||||||||||||
Sbjct: 452 tcgtcgtcgtcgcgcagctc 471
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>ref|XM_473503.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1713

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 102 ctgctgctcgtcgtcgtcgc 121
           ||||||||||||||||||||
Sbjct: 91  ctgctgctcgtcgtcgtcgc 110
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>ref|XM_366102.1| Magnaporthe grisea 70-15 hypothetical protein (MG10322.4) partial
           mRNA
          Length = 765

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 68  cccggcggcttcggcgttcctcgc 91
           ||||||||||||||||| ||||||
Sbjct: 262 cccggcggcttcggcgtccctcgc 285
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>gb|AC136226.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0067H15, complete sequence
          Length = 184316

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 106   tgctcgtcgtcgtcgcgcagctcg 129
             ||||||||||||||| ||||||||
Sbjct: 75230 tgctcgtcgtcgtcgagcagctcg 75207
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>gb|AC127549.3| Mus musculus BAC clone RP24-510G5 from chromosome 5, complete sequence
          Length = 152564

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 85     tcctcgccggcgtcctcctgctgctcgtcgtcgtcg 120
              |||||| || ||||||||| || |||||||||||||
Sbjct: 122691 tcctcgtcgtcgtcctcctcctcctcgtcgtcgtcg 122726
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>emb|CR380952.1| Candida glabrata strain CBS138 chromosome F complete sequence
          Length = 927101

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 378    tttgatttgagcaattgcaa 397
              ||||||||||||||||||||
Sbjct: 141884 tttgatttgagcaattgcaa 141865
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>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29
          Length = 291000

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 97     tcctcctgctgctcgtcgtc 116
              ||||||||||||||||||||
Sbjct: 141898 tcctcctgctgctcgtcgtc 141879
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>emb|AL606694.3|OSJN00110 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0078D11,
             complete sequence
          Length = 115006

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   ctgctgctcgtcgtcgtcgc 121
             ||||||||||||||||||||
Sbjct: 44777 ctgctgctcgtcgtcgtcgc 44758
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>gb|AC115847.19| Mus musculus chromosome 5, clone RP24-245J15, complete sequence
          Length = 182243

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 85     tcctcgccggcgtcctcctgctgctcgtcgtcgtcg 120
              |||||| || ||||||||| || |||||||||||||
Sbjct: 175084 tcctcgtcgtcgtcctcctcctcctcgtcgtcgtcg 175049
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 102      ctgctgctcgtcgtcgtcgc 121
                ||||||||||||||||||||
Sbjct: 28158340 ctgctgctcgtcgtcgtcgc 28158321
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 101     cctgctgctcgtcgtcgtcg 120
               ||||||||||||||||||||
Sbjct: 1467329 cctgctgctcgtcgtcgtcg 1467310
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 106     tgctcgtcgtcgtcgcgcagctcg 129
               ||||||||||||||| ||||||||
Sbjct: 6950307 tgctcgtcgtcgtcgagcagctcg 6950284
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 109      tcgtcgtcgtcgcgcagctc 128
                ||||||||||||||||||||
Sbjct: 22542795 tcgtcgtcgtcgcgcagctc 22542814
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>gb|AE004834.1| Pseudomonas aeruginosa PAO1, section 395 of 529 of the complete
            genome
          Length = 11537

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 108  ctcgtcgtcgtcgcgcagctcgct 131
            ||||||| ||||||||||||||||
Sbjct: 9415 ctcgtcgccgtcgcgcagctcgct 9392
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>gb|AC017004.4| Homo sapiens BAC clone RP11-88C6 from 2, complete sequence
          Length = 184850

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    atgggggagagcaagctatt 67
             ||||||||||||||||||||
Sbjct: 23429 atgggggagagcaagctatt 23448
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>dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0038F22
          Length = 101666

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   cctgctgctcgtcgtcgtcg 120
             ||||||||||||||||||||
Sbjct: 74615 cctgctgctcgtcgtcgtcg 74596
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>dbj|AP004877.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0472F10
          Length = 136076

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   tgctcgtcgtcgtcgcgcag 125
             ||||||||||||||||||||
Sbjct: 88545 tgctcgtcgtcgtcgcgcag 88526
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>dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              clone:P0425F02
          Length = 176979

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 101    cctgctgctcgtcgtcgtcg 120
              ||||||||||||||||||||
Sbjct: 175868 cctgctgctcgtcgtcgtcg 175849
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>dbj|AP003332.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1097D05
          Length = 144879

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   tcgtcgtcgtcgcgcagctc 128
             ||||||||||||||||||||
Sbjct: 58532 tcgtcgtcgtcgcgcagctc 58551
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>dbj|AP004397.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0436B06
          Length = 148947

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 88     tcgccggcgtcctcctgctgctcg 111
              ||||||||||| ||||||||||||
Sbjct: 121414 tcgccggcgtcatcctgctgctcg 121391
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>dbj|AP003962.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1705_C03
          Length = 118339

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 88    tcgccggcgtcctcctgctgctcg 111
             ||||||||||| ||||||||||||
Sbjct: 30153 tcgccggcgtcatcctgctgctcg 30130
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>dbj|AK106449.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-E10, full
           insert sequence
          Length = 3083

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 101 cctgctgctcgtcgtcgtcg 120
           ||||||||||||||||||||
Sbjct: 256 cctgctgctcgtcgtcgtcg 275
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>dbj|AK072348.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050N03, full
            insert sequence
          Length = 3262

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 88   tcgccggcgtcctcctgctgctcg 111
            ||||||||||| ||||||||||||
Sbjct: 1883 tcgccggcgtcatcctgctgctcg 1906
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>dbj|AK065280.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002L23, full
           insert sequence
          Length = 1096

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 106 tgctcgtcgtcgtcgcgcagctcg 129
           ||||||||||||||| ||||||||
Sbjct: 521 tgctcgtcgtcgtcgagcagctcg 498
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>dbj|AB248874.1| Streptomyces albulus sttH genes for hypothetical protein,
            streptothricin hydrolase, putative lipase, complete and
            partial cds
          Length = 2913

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 105  ctgctcgtcgtcgtcgcgcagctc 128
            ||||| ||||||||||||||||||
Sbjct: 2727 ctgctggtcgtcgtcgcgcagctc 2750
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>dbj|AB041884.1| Pseudomonas sp. E-3 metH', him genes for 9-hexadecenoic acid
           cis-trans isomerase, methionine synthaseme, partial and
           complete cds
          Length = 3606

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 121 cgcagctcgctggcgcccag 140
           ||||||||||||||||||||
Sbjct: 80  cgcagctcgctggcgcccag 99


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,650,676
Number of Sequences: 3902068
Number of extensions: 3650676
Number of successful extensions: 79487
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78358
Number of HSP's gapped (non-prelim): 1129
length of query: 406
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 384
effective length of database: 17,147,199,772
effective search space: 6584524712448
effective search space used: 6584524712448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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