ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart48c04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_549850.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1546 Score = 145 bits (73), Expect = 2e-31 Identities = 190/229 (82%) Strand = Plus / Plus Query: 209 cgggaggattacatacagaacgccgtcaagttcctcgagcatccaaaggtgaagggctct 268 |||||||||||||||||||| || || || || || | |||||||| |||||||| ||| Sbjct: 168 cgggaggattacatacagaatgctgttaactttcttggacatccaaaagtgaagggttct 227 Query: 269 ccggtgtcctacaggtactctttcctggagaagaaagggctcacaaaggaggaaatcgac 328 || || | |||||| |||||| ||||| |||||||| || |||||||| ||||||||| Sbjct: 228 ccagtattttacaggcgctcttttctggaaaagaaaggccttacaaaggaagaaatcgac 287 Query: 329 gaggccttccgtcgggttcctgatccgccgacaaacagtacggatgctgcggctgtcggt 388 |||||||||||||||||||||||||| | | |||||||||| |||| ||| ||||| | | Sbjct: 288 gaggccttccgtcgggttcctgatccacagccaaacagtacagatgttgcagctgttgct 347 Query: 389 tcgcaacaagcaagcaatccaaatcaatctgccggggtgcagccttacg 437 || |||||||| ||| ||||||||||||| || || || ||||||| Sbjct: 348 tcacaacaagccggcatcgcaaatcaatctgctggagtacaaccttacg 396
>dbj|AK105067.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-H02, full insert sequence Length = 1763 Score = 145 bits (73), Expect = 2e-31 Identities = 190/229 (82%) Strand = Plus / Plus Query: 209 cgggaggattacatacagaacgccgtcaagttcctcgagcatccaaaggtgaagggctct 268 |||||||||||||||||||| || || || || || | |||||||| |||||||| ||| Sbjct: 194 cgggaggattacatacagaatgctgttaactttcttggacatccaaaagtgaagggttct 253 Query: 269 ccggtgtcctacaggtactctttcctggagaagaaagggctcacaaaggaggaaatcgac 328 || || | |||||| |||||| ||||| |||||||| || |||||||| ||||||||| Sbjct: 254 ccagtattttacaggcgctcttttctggaaaagaaaggccttacaaaggaagaaatcgac 313 Query: 329 gaggccttccgtcgggttcctgatccgccgacaaacagtacggatgctgcggctgtcggt 388 |||||||||||||||||||||||||| | | |||||||||| |||| ||| ||||| | | Sbjct: 314 gaggccttccgtcgggttcctgatccacagccaaacagtacagatgttgcagctgttgct 373 Query: 389 tcgcaacaagcaagcaatccaaatcaatctgccggggtgcagccttacg 437 || |||||||| ||| ||||||||||||| || || || ||||||| Sbjct: 374 tcacaacaagccggcatcgcaaatcaatctgctggagtacaaccttacg 422
>dbj|AK066969.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088I21, full insert sequence Length = 1547 Score = 145 bits (73), Expect = 2e-31 Identities = 190/229 (82%) Strand = Plus / Plus Query: 209 cgggaggattacatacagaacgccgtcaagttcctcgagcatccaaaggtgaagggctct 268 |||||||||||||||||||| || || || || || | |||||||| |||||||| ||| Sbjct: 169 cgggaggattacatacagaatgctgttaactttcttggacatccaaaagtgaagggttct 228 Query: 269 ccggtgtcctacaggtactctttcctggagaagaaagggctcacaaaggaggaaatcgac 328 || || | |||||| |||||| ||||| |||||||| || |||||||| ||||||||| Sbjct: 229 ccagtattttacaggcgctcttttctggaaaagaaaggccttacaaaggaagaaatcgac 288 Query: 329 gaggccttccgtcgggttcctgatccgccgacaaacagtacggatgctgcggctgtcggt 388 |||||||||||||||||||||||||| | | |||||||||| |||| ||| ||||| | | Sbjct: 289 gaggccttccgtcgggttcctgatccacagccaaacagtacagatgttgcagctgttgct 348 Query: 389 tcgcaacaagcaagcaatccaaatcaatctgccggggtgcagccttacg 437 || |||||||| ||| ||||||||||||| || || || ||||||| Sbjct: 349 tcacaacaagccggcatcgcaaatcaatctgctggagtacaaccttacg 397
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 115 bits (58), Expect = 2e-22 Identities = 121/142 (85%) Strand = Plus / Minus Query: 209 cgggaggattacatacagaacgccgtcaagttcctcgagcatccaaaggtgaagggctct 268 |||||||||||||||||||| || || || || || | |||||||| |||||||| ||| Sbjct: 384864 cgggaggattacatacagaatgctgttaactttcttggacatccaaaagtgaagggttct 384805 Query: 269 ccggtgtcctacaggtactctttcctggagaagaaagggctcacaaaggaggaaatcgac 328 || || | |||||| |||||| ||||| |||||||| || |||||||| ||||||||| Sbjct: 384804 ccagtattttacaggcgctcttttctggaaaagaaaggccttacaaaggaagaaatcgac 384745 Query: 329 gaggccttccgtcgggttcctg 350 |||||||||||||||||||||| Sbjct: 384744 gaggccttccgtcgggttcctg 384723 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 26247317 cttccgccgccaccgccgcc 26247298
>dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0005A05 Length = 190834 Score = 115 bits (58), Expect = 2e-22 Identities = 121/142 (85%) Strand = Plus / Minus Query: 209 cgggaggattacatacagaacgccgtcaagttcctcgagcatccaaaggtgaagggctct 268 |||||||||||||||||||| || || || || || | |||||||| |||||||| ||| Sbjct: 136702 cgggaggattacatacagaatgctgttaactttcttggacatccaaaagtgaagggttct 136643 Query: 269 ccggtgtcctacaggtactctttcctggagaagaaagggctcacaaaggaggaaatcgac 328 || || | |||||| |||||| ||||| |||||||| || |||||||| ||||||||| Sbjct: 136642 ccagtattttacaggcgctcttttctggaaaagaaaggccttacaaaggaagaaatcgac 136583 Query: 329 gaggccttccgtcgggttcctg 350 |||||||||||||||||||||| Sbjct: 136582 gaggccttccgtcgggttcctg 136561
>dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0482C06 Length = 182779 Score = 115 bits (58), Expect = 2e-22 Identities = 121/142 (85%) Strand = Plus / Minus Query: 209 cgggaggattacatacagaacgccgtcaagttcctcgagcatccaaaggtgaagggctct 268 |||||||||||||||||||| || || || || || | |||||||| |||||||| ||| Sbjct: 25065 cgggaggattacatacagaatgctgttaactttcttggacatccaaaagtgaagggttct 25006 Query: 269 ccggtgtcctacaggtactctttcctggagaagaaagggctcacaaaggaggaaatcgac 328 || || | |||||| |||||| ||||| |||||||| || |||||||| ||||||||| Sbjct: 25005 ccagtattttacaggcgctcttttctggaaaagaaaggccttacaaaggaagaaatcgac 24946 Query: 329 gaggccttccgtcgggttcctg 350 |||||||||||||||||||||| Sbjct: 24945 gaggccttccgtcgggttcctg 24924
>gb|AY596582.1| Saccharum officinarum clone SCBGLR1023F06, complete sequence Length = 1920 Score = 52.0 bits (26), Expect = 0.002 Identities = 104/130 (80%) Strand = Plus / Minus Query: 225 agaacgccgtcaagttcctcgagcatccaaaggtgaagggctctccggtgtcctacaggt 284 |||||||||||||||||||| || || ||||| | |||||| || || ||||||| Sbjct: 1663 agaacgccgtcaagttcctctcccaccccaaggtcaggggctcccccgtcgtctacaggc 1604 Query: 285 actctttcctggagaagaaagggctcacaaaggaggaaatcgacgaggccttccgtcggg 344 || ||||| |||||||| || ||||| | ||||| ||||||||||||||||| | | Sbjct: 1603 gatccttcctcgagaagaagggcctcaccaccgaggagatcgacgaggccttccgaagag 1544 Query: 345 ttcctgatcc 354 |||||||||| Sbjct: 1543 ttcctgatcc 1534
>gb|AY104797.1| Zea mays PCO110845 mRNA sequence Length = 1800 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 317 gaggaaatcgacgaggccttccgtcgggttcctgatcc 354 ||||| ||||||||||||||||| ||||||||||||| Sbjct: 303 gaggagatcgacgaggccttccgaagggttcctgatcc 340
>ref|XM_475939.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 816 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 287 tctttcctggagaagaaagggctcacaaaggaggaaatcgacgaggc 333 |||||||| ||||||||||||||||| ||| |||||||| ||||| Sbjct: 238 tctttccttgagaagaaagggctcaccgtggatgaaatcgatgaggc 284
>gb|AC098571.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1126_B10, complete sequence Length = 127304 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 287 tctttcctggagaagaaagggctcacaaaggaggaaatcgacgaggc 333 |||||||| ||||||||||||||||| ||| |||||||| ||||| Sbjct: 87861 tctttccttgagaagaaagggctcaccgtggatgaaatcgatgaggc 87907
>gb|AY262026.1| Oryza sativa (japonica cultivar-group) peroxisomal membrane protein OsPex14p mRNA, complete cds Length = 1827 Score = 46.1 bits (23), Expect = 0.13 Identities = 56/67 (83%) Strand = Plus / Plus Query: 290 ttcctggagaagaaagggctcacaaaggaggaaatcgacgaggccttccgtcgggttcct 349 ||||| |||||||| || || || ||||| || ||||||||||||||||| || || || Sbjct: 307 ttcctagagaagaagggccttaccaaggacgagatcgacgaggccttccgacgagtcccc 366 Query: 350 gatccgc 356 ||||||| Sbjct: 367 gatccgc 373 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 cagaacgccgtcaagttcctc 244 ||||||||||||||||||||| Sbjct: 241 cagaacgccgtcaagttcctc 261
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 287 tctttcctggagaagaaagggctcacaaaggaggaaatcgacgaggc 333 |||||||| ||||||||||||||||| ||| |||||||| ||||| Sbjct: 28560168 tctttccttgagaagaaagggctcaccgtggatgaaatcgatgaggc 28560214 Score = 44.1 bits (22), Expect = 0.52 Identities = 43/50 (86%) Strand = Plus / Plus Query: 290 ttcctggagaagaaagggctcacaaaggaggaaatcgacgaggccttccg 339 ||||| |||||||| || || || ||||| || ||||||||||||||||| Sbjct: 60805 ttcctagagaagaagggccttaccaaggacgagatcgacgaggccttccg 60854 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 cagaacgccgtcaagttcctc 244 ||||||||||||||||||||| Sbjct: 60739 cagaacgccgtcaagttcctc 60759
>dbj|AK099093.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019E14, full insert sequence Length = 1901 Score = 46.1 bits (23), Expect = 0.13 Identities = 56/67 (83%) Strand = Plus / Plus Query: 290 ttcctggagaagaaagggctcacaaaggaggaaatcgacgaggccttccgtcgggttcct 349 ||||| |||||||| || || || ||||| || ||||||||||||||||| || || || Sbjct: 318 ttcctagagaagaagggccttaccaaggacgagatcgacgaggccttccgacgagtcccc 377 Query: 350 gatccgc 356 ||||||| Sbjct: 378 gatccgc 384 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 cagaacgccgtcaagttcctc 244 ||||||||||||||||||||| Sbjct: 252 cagaacgccgtcaagttcctc 272
>dbj|AK065040.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001H17, full insert sequence Length = 1151 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 287 tctttcctggagaagaaagggctcacaaaggaggaaatcgacgaggc 333 |||||||| ||||||||||||||||| ||| |||||||| ||||| Sbjct: 293 tctttccttgagaagaaagggctcaccgtggatgaaatcgatgaggc 339
>dbj|AK062021.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-F11, full insert sequence Length = 1851 Score = 46.1 bits (23), Expect = 0.13 Identities = 56/67 (83%) Strand = Plus / Plus Query: 290 ttcctggagaagaaagggctcacaaaggaggaaatcgacgaggccttccgtcgggttcct 349 ||||| |||||||| || || || ||||| || ||||||||||||||||| || || || Sbjct: 332 ttcctagagaagaagggccttaccaaggacgagatcgacgaggccttccgacgagtcccc 391 Query: 350 gatccgc 356 ||||||| Sbjct: 392 gatccgc 398 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 cagaacgccgtcaagttcctc 244 ||||||||||||||||||||| Sbjct: 266 cagaacgccgtcaagttcctc 286
>ref|XM_493863.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 462 Score = 44.1 bits (22), Expect = 0.52 Identities = 43/50 (86%) Strand = Plus / Plus Query: 290 ttcctggagaagaaagggctcacaaaggaggaaatcgacgaggccttccg 339 ||||| |||||||| || || || ||||| || ||||||||||||||||| Sbjct: 355 ttcctagagaagaagggccttaccaaggacgagatcgacgaggccttccg 404 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 cagaacgccgtcaagttcctc 244 ||||||||||||||||||||| Sbjct: 289 cagaacgccgtcaagttcctc 309
>gb|AC073405.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0036D10, complete sequence Length = 156772 Score = 44.1 bits (22), Expect = 0.52 Identities = 43/50 (86%) Strand = Plus / Plus Query: 290 ttcctggagaagaaagggctcacaaaggaggaaatcgacgaggccttccg 339 ||||| |||||||| || || || ||||| || ||||||||||||||||| Sbjct: 60805 ttcctagagaagaagggccttaccaaggacgagatcgacgaggccttccg 60854 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 cagaacgccgtcaagttcctc 244 ||||||||||||||||||||| Sbjct: 60739 cagaacgccgtcaagttcctc 60759
>gb|AC152969.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0098I11, complete sequence Length = 122970 Score = 44.1 bits (22), Expect = 0.52 Identities = 43/50 (86%) Strand = Plus / Plus Query: 290 ttcctggagaagaaagggctcacaaaggaggaaatcgacgaggccttccg 339 ||||| |||||||| || || || ||||| || ||||||||||||||||| Sbjct: 70192 ttcctagagaagaagggccttaccaaggacgagatcgacgaggccttccg 70241 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 cagaacgccgtcaagttcctc 244 ||||||||||||||||||||| Sbjct: 70126 cagaacgccgtcaagttcctc 70146
>ref|XM_323961.1| Neurospora crassa OR74A hypothetical protein (NCU04606.1) partial mRNA Length = 2754 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 agaacgccgtcaagttcctcg 245 ||||||||||||||||||||| Sbjct: 1394 agaacgccgtcaagttcctcg 1414
>ref|XM_953756.1| Neurospora crassa OR74A hypothetical protein (NCU04606.1) partial mRNA Length = 2754 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 agaacgccgtcaagttcctcg 245 ||||||||||||||||||||| Sbjct: 1394 agaacgccgtcaagttcctcg 1414
>emb|BX294012.1|NC80A10 Neurospora crassa DNA linkage group V Cosmid contig 80A10 Length = 161126 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 agaacgccgtcaagttcctcg 245 ||||||||||||||||||||| Sbjct: 151264 agaacgccgtcaagttcctcg 151244
>emb|AL442637.4|HS495L19 Homo sapiens chromosome 9 BAC RP11-495L19, complete sequence Length = 180915 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 293 ctggagaagaaagggctcaca 313 ||||||||||||||||||||| Sbjct: 80808 ctggagaagaaagggctcaca 80788
>ref|XM_465424.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1587 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 157 cttccgccgccaccgccgcc 176
>ref|XM_464217.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2366 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 81 cttccgccgccaccgccgcc 100
>ref|NM_192364.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 603 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 461 cttccgccgccaccgccgcc 442
>gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0011J22 map R10571S, complete sequence Length = 154441 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 5836 cttccgccgccaccgccgcc 5855
>gb|AC147812.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0073K23 map near R10571S, complete sequence Length = 161073 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 105137 cttccgccgccaccgccgcc 105156
>gb|AC134256.4| Oryza sativa (japonica cultivar-group), complete sequence Length = 178233 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 118613 cttccgccgccaccgccgcc 118594
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 39 tccacttccgccgccaccgccgcc 62 ||||| |||||||||||||||||| Sbjct: 1134163 tccacctccgccgccaccgccgcc 1134140
>gb|AC153564.6| Mus musculus 10 BAC RP23-39C23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 241022 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 gtactctttcctggagaaga 302 |||||||||||||||||||| Sbjct: 186358 gtactctttcctggagaaga 186377
>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12 Length = 349354 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 14312 cttccgccgccaccgccgcc 14293
>emb|BX294134.1| Pirellula sp. strain 1 complete genome; segment 2/24 Length = 304450 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 190437 cttccgccgccaccgccgcc 190418
>gb|DQ397621.1| Cenarchaeum symbiosum clone C21E11, complete sequence Length = 41700 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 39 tccacttccgccgccaccgccgcc 62 ||||| |||||||||||||||||| Sbjct: 15382 tccacctccgccgccaccgccgcc 15405
>gb|AC105363.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1705B08, complete sequence Length = 100986 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 39 tccacttccgccgccaccgccgcc 62 ||||| |||||||||||||||||| Sbjct: 37867 tccacctccgccgccaccgccgcc 37844
>gb|AY012603.1| Drosophila lacicola no on or off transient A (nonA) gene, exon 2 and partial cds Length = 493 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 39 tccacttccgccgccaccgccgcc 62 ||||| |||||||||||||||||| Sbjct: 285 tccacctccgccgccaccgccgcc 262
>gb|AY012601.1| Drosophila borealis no on or off transient A (nonA) gene, exon 2 and partial cds Length = 478 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 39 tccacttccgccgccaccgccgcc 62 ||||| |||||||||||||||||| Sbjct: 270 tccacctccgccgccaccgccgcc 247
>emb|CR406635.1| Gallus gallus finished cDNA, clone ChEST768h8 Length = 1152 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 tccaaaggtgaagggctctc 269 |||||||||||||||||||| Sbjct: 422 tccaaaggtgaagggctctc 403
>gb|AC022431.6| Homo sapiens chromosome 5 clone CTD-2583B1, complete sequence Length = 173698 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 297 agaagaaagggctcacaaaggagg 320 |||||||||| ||||||||||||| Sbjct: 163093 agaagaaaggcctcacaaaggagg 163070
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 5691933 cttccgccgccaccgccgcc 5691952
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 18704233 cttccgccgccaccgccgcc 18704214 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 3309149 cttccgccgccaccgccgcc 3309130
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 39 tccacttccgccgccaccgccgcc 62 ||||| |||||||||||||||||| Sbjct: 7178452 tccacctccgccgccaccgccgcc 7178429
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 7796030 cttccgccgccaccgccgcc 7796011
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 25697721 cttccgccgccaccgccgcc 25697740
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 39 tccacttccgccgccaccgccgcc 62 ||||| |||||||||||||||||| Sbjct: 1134161 tccacctccgccgccaccgccgcc 1134138
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 15063600 cttccgccgccaccgccgcc 15063619 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 4440293 cttccgccgccaccgccgcc 4440312 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 3466046 cttccgccgccaccgccgcc 3466065
>ref|XM_237984.3| PREDICTED: Rattus norvegicus similar to Low-density lipoprotein receptor-related protein 4 precursor (LDLR dan) (LOC290790), mRNA Length = 7039 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 530 ctccttggtgctggtatttt 549 |||||||||||||||||||| Sbjct: 543 ctccttggtgctggtatttt 562
>dbj|AP004816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0533E11 Length = 150678 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 69381 cttccgccgccaccgccgcc 69400
>gb|AC008940.3|AC008940 Homo sapiens chromosome 5 clone CTD-2319M24, complete sequence Length = 131975 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 297 agaagaaagggctcacaaaggagg 320 |||||||||| ||||||||||||| Sbjct: 16243 agaagaaaggcctcacaaaggagg 16220
>dbj|AP003792.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1159_D09 Length = 147770 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 59998 cttccgccgccaccgccgcc 59979
>dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0544B02 Length = 156339 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 123857 cttccgccgccaccgccgcc 123876
>dbj|AP003571.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0458E02 Length = 154458 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 121166 cttccgccgccaccgccgcc 121185
>dbj|AP004011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1381_H04 Length = 130961 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 39 tccacttccgccgccaccgccgcc 62 ||||| |||||||||||||||||| Sbjct: 30557 tccacctccgccgccaccgccgcc 30534
>dbj|AP004756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0592C05 Length = 150478 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 39 tccacttccgccgccaccgccgcc 62 ||||| |||||||||||||||||| Sbjct: 130531 tccacctccgccgccaccgccgcc 130508
>dbj|AP004863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0023I17 Length = 141852 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 10841 cttccgccgccaccgccgcc 10860
>dbj|AP004093.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1661_C12 Length = 122214 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 78869 cttccgccgccaccgccgcc 78888
>dbj|AP005517.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0090H20 Length = 132628 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 27317 cttccgccgccaccgccgcc 27298
>dbj|AK106367.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-B12, full insert sequence Length = 1780 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 39 tccacttccgccgccaccgccgcc 62 ||||| |||||||||||||||||| Sbjct: 1561 tccacctccgccgccaccgccgcc 1538
>dbj|AK103682.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136E21, full insert sequence Length = 2366 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 80 cttccgccgccaccgccgcc 99
>dbj|AK067511.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110H05, full insert sequence Length = 3871 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 113 cttccgccgccaccgccgcc 132
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 aaggaggaaatcgacgaggc 333 |||||||||||||||||||| Sbjct: 224719 aaggaggaaatcgacgaggc 224700
>emb|AL773595.10| Mouse DNA sequence from clone RP23-297I16 on chromosome 2, complete sequence Length = 173925 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 ctctcctccggtcctgctat 36 |||||||||||||||||||| Sbjct: 36361 ctctcctccggtcctgctat 36380
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 18863634 cttccgccgccaccgccgcc 18863615 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 3317862 cttccgccgccaccgccgcc 3317843
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 5691926 cttccgccgccaccgccgcc 5691945
>emb|AL954853.5|CNS08CD7 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159056 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 46456 cttccgccgccaccgccgcc 46475
>gb|AC093316.28| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202i7, complete sequence Length = 226567 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 gtactctttcctggagaaga 302 |||||||||||||||||||| Sbjct: 122042 gtactctttcctggagaaga 122023
>dbj|AB035349.1| Oryza sativa (japonica cultivar-group) DNA, homologous to 5'-flanking region of mitochondrial rps10 genes, clone:#15 Length = 1300 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 cttccgccgccaccgccgcc 62 |||||||||||||||||||| Sbjct: 423 cttccgccgccaccgccgcc 442 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,971,666 Number of Sequences: 3902068 Number of extensions: 3971666 Number of successful extensions: 96491 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94993 Number of HSP's gapped (non-prelim): 1489 length of query: 601 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 578 effective length of database: 17,143,297,704 effective search space: 9908826072912 effective search space used: 9908826072912 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
