ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart48c03 |
|---|---|
| Clone Library Name | barley_pub |
>VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetative storage| protein B) Length = 254 Score = 117 bits (294), Expect = 2e-26 Identities = 63/139 (45%), Positives = 85/139 (61%), Gaps = 1/139 (0%) Frame = +2 Query: 182 LRPLLGSGKHAG-VACDSWVLGVEAYNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVID 358 LR G G+ + V C S+ L VEA+N+R +KT+P C Y+ G FR DSK V Sbjct: 28 LRMKTGYGERSSEVKCASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFRSDSKTVNQ 87 Query: 359 QALAYVDSLKLAGNGKEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQGSAPA 538 QA Y ++ N ++++F ID T LSN+PYY KHG+G FN T ++ +V +G APA Sbjct: 88 QAFFYASEREVHHN--DIFIFGIDNTVLSNIPYYEKHGYGVEEFNETLYDEWVNKGDAPA 145 Query: 539 LPETKRLYNKLRSIGVKPV 595 LPET + YNKL S+G K V Sbjct: 146 LPETLKNYNKLLSLGFKIV 164
>S25K_SOYBN (P10742) Stem 31 kDa glycoprotein precursor (Vegetative storage| protein VSP25) (Fragment) Length = 291 Score = 116 bits (291), Expect = 4e-26 Identities = 58/124 (46%), Positives = 80/124 (64%) Frame = +2 Query: 218 VACDSWVLGVEAYNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVIDQALAYVDSLKLAG 397 V C SW L VEA+N+ ++T+P C Y+ G +R DSK V QA Y L++ Sbjct: 37 VKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV-- 94 Query: 398 NGKEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQGSAPALPETKRLYNKLRS 577 + K+ +VF ID T LSN+PYY KHG+G FN+T ++ +V +G+APALPET + YNKL S Sbjct: 95 HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVS 154 Query: 578 IGVK 589 +G K Sbjct: 155 LGFK 158
>VSPA_SOYBN (P15490) Stem 28 kDa glycoprotein precursor (Vegetative storage| protein A) Length = 254 Score = 116 bits (291), Expect = 4e-26 Identities = 58/124 (46%), Positives = 80/124 (64%) Frame = +2 Query: 218 VACDSWVLGVEAYNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVIDQALAYVDSLKLAG 397 V C SW L VEA+N+ ++T+P C Y+ G +R DSK V QA Y L++ Sbjct: 40 VKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV-- 97 Query: 398 NGKEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQGSAPALPETKRLYNKLRS 577 + K+ +VF ID T LSN+PYY KHG+G FN+T ++ +V +G+APALPET + YNKL S Sbjct: 98 HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVS 157 Query: 578 IGVK 589 +G K Sbjct: 158 LGFK 161
>PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (Apase-1(1))| Length = 255 Score = 112 bits (281), Expect = 6e-25 Identities = 50/122 (40%), Positives = 75/122 (61%) Frame = +2 Query: 224 CDSWVLGVEAYNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVIDQALAYVDSLKLAGNG 403 C +W VE N+ WKT+P C YV YM+G ++ + V D+A Y S+ L +G Sbjct: 43 CTTWRFVVETNNLSPWKTIPEECADYVKEYMVGPGYKMEIDRVSDEAGEYAKSVDLGDDG 102 Query: 404 KEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQGSAPALPETKRLYNKLRSIG 583 ++VW+FD+DET LSNLPYY+ H +G F+ F+ +V G+APAL + +LY ++ +G Sbjct: 103 RDVWIFDVDETLLSNLPYYSDHRYGLEVFDDVEFDKWVENGTAPALGSSLKLYQEVLKLG 162 Query: 584 VK 589 K Sbjct: 163 FK 164
>VSP1_ARATH (O49195) Vegetative storage protein 1 precursor| Length = 270 Score = 105 bits (263), Expect = 8e-23 Identities = 52/126 (41%), Positives = 79/126 (62%), Gaps = 2/126 (1%) Frame = +2 Query: 224 CDSWVLGVEAYNVRDWKTVPASCEGYVGHYMLGS-HFRRDSKVVIDQALAYVDSLKLAGN 400 C SW LGVE N+ ++ TVPA+C+ YV Y++ S ++ DSK V +A Y L L + Sbjct: 57 CRSWHLGVETSNIINFDTVPANCKAYVEDYLITSKQYQYDSKTVNKEAYFYAKGLALKND 116 Query: 401 GKEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQG-SAPALPETKRLYNKLRS 577 VW+FD+D+T LS++PYYAK+G+G ++ +++ G S P LPET LY L Sbjct: 117 TINVWIFDLDDTLLSSIPYYAKYGYGTENTAPGAYWSWLESGESTPGLPETLHLYENLLE 176 Query: 578 IGVKPV 595 +G++P+ Sbjct: 177 LGIEPI 182
>VSP2_ARATH (O82122) Vegetative storage protein 2 precursor| Length = 265 Score = 105 bits (262), Expect = 1e-22 Identities = 51/126 (40%), Positives = 78/126 (61%), Gaps = 2/126 (1%) Frame = +2 Query: 224 CDSWVLGVEAYNVRDWKTVPASCEGYVGHYMLGS-HFRRDSKVVIDQALAYVDSLKLAGN 400 C SW LGVE N+ D+ TVPA+C+ YV Y++ S ++ DSK V +A Y L L + Sbjct: 52 CRSWHLGVETSNIIDFDTVPANCKDYVEDYLITSKQYQYDSKTVCKEAYFYAKGLALKND 111 Query: 401 GKEVWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQG-SAPALPETKRLYNKLRS 577 VW+FD+D+T LS++PYYAK+G+G + ++ ++ G S P LPE LY + Sbjct: 112 TVNVWIFDLDDTLLSSIPYYAKYGYGTEKTDPGAYWLWLGTGASTPGLPEALHLYQNIIE 171 Query: 578 IGVKPV 595 +G++P+ Sbjct: 172 LGIEPI 177
>CYF_PSINU (Q8WI07) Apocytochrome f precursor| Length = 321 Score = 35.4 bits (80), Expect = 0.13 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 3/84 (3%) Frame = +2 Query: 113 VNIRMPTSAAD--VDEAVVA-PLIHALRPLLGSGKHAGVACDSWVLGVEAYNVRDWKTVP 283 V+I +P S V EAVV P ++ +LG+GK G+ + ++ E + + + +P Sbjct: 66 VDIEVPQSVFPNTVFEAVVKIPYDKQIKQVLGNGKKGGINVGAVLILPEGFELAPYNRIP 125 Query: 284 ASCEGYVGHYMLGSHFRRDSKVVI 355 A + +G L ++R D + +I Sbjct: 126 AEMKDKIGDLALFQNYRPDKRNII 149
>HEL_HAEIN (P26093) Lipoprotein E precursor (Outer membrane protein P4) (OMP| P4) Length = 274 Score = 33.1 bits (74), Expect = 0.62 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 9/97 (9%) Frame = +2 Query: 314 MLGSHFRRDSKVVIDQALAY---------VDSLKLAGNGKEVWVFDIDETTLSNLPYYAK 466 +LG ++ +DS +ALAY D K+A K+ V D+DET L N PY Sbjct: 41 VLGLNWMQDSGEY--KALAYQAYNAAKVAFDHAKVAKGKKKAVVADLDETMLDNSPYAGW 98 Query: 467 HGFGATPFNATSFNAYVLQGSAPALPETKRLYNKLRS 577 PF+ + +V + A+P N + S Sbjct: 99 QVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNS 135
>MMPL8_MYCTU (O07800) Putative membrane protein mmpL8| Length = 1089 Score = 32.7 bits (73), Expect = 0.81 Identities = 19/50 (38%), Positives = 26/50 (52%) Frame = +2 Query: 242 GVEAYNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVIDQALAYVDSLKL 391 G+ YN D KT+PAS E +G+ L HF S ++I + L S L Sbjct: 418 GLARYNYDDRKTLPASVESSIGYAALDKHF--PSNLIIPEYLFIQSSTDL 465
>THII_PSEPK (Q88CY4) Thiamine biosynthesis protein thiI| Length = 484 Score = 30.4 bits (67), Expect = 4.0 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +2 Query: 239 LGVEAYNVRDWKTVPASCEGYVGHYMLGSHF 331 L VE Y + D+ + A C+ + GH + G HF Sbjct: 79 LQVEEYPLGDFDDIVAKCKHHFGHLLAGKHF 109
>RPOB_GRATL (Q6B8R8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1120 Score = 30.0 bits (66), Expect = 5.3 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%) Frame = +2 Query: 167 PLIHALRPLLGSGKHAGVACDSWVLGVEAYN-----VRDWKTVPASCEGYVGHYMLGSHF 331 PL+ + ++G+G A +A DS + + N V K + EGY HY L ++ Sbjct: 591 PLLFPEKSIVGTGLEAKIAKDSGMTIISRTNGTVSYVSGTKIGIQNKEGYTIHYRLKKYY 650 Query: 332 RRDSKVVIDQ 361 R + I+Q Sbjct: 651 RSNQDTCINQ 660
>PLB3_CANAL (Q9UVX1) Lysophospholipase 3 precursor (EC 3.1.1.5) (Phospholipase| B 3) Length = 754 Score = 29.6 bits (65), Expect = 6.9 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Frame = +2 Query: 176 HALRPLLGSGKHA-GVACDSWVLGVEAYNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVV 352 H L LL S + G++ +W++G A N DW +V G + L S + Sbjct: 209 HGLGGLLDSSTYVVGLSGGNWLVGSLALN--DWLSVGDIVNGKSTIWQLQDSILNPSGMR 266 Query: 353 IDQALAYVDSLKLAGNGKE 409 ID+ +AY L A KE Sbjct: 267 IDKTIAYYYGLAQAVQAKE 285
>HIS81_CARHZ (Q3AD52) Histidinol-phosphate aminotransferase 1 (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase 1) Length = 349 Score = 29.3 bits (64), Expect = 9.0 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = +2 Query: 506 NAYVLQGSAPAL-PETKRLYNKLRSIGVKPV 595 N V QG + E +RLYN+L S+G+KPV Sbjct: 258 NEEVFQGEIKEIVAERERLYNQLASLGLKPV 288 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,532,352 Number of Sequences: 219361 Number of extensions: 1073591 Number of successful extensions: 4116 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3908 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4096 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5216272880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
