Clone Information

BLAST Search Result

Clone Name	bart48b12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RS3A_ARATH (Q42262) 40S ribosomal protein S3a	89	4e-36
2	RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)	86	8e-36
3	RS3A_HELAN (P49198) 40S ribosomal protein S3a	87	3e-35
4	RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific ...	87	5e-35
5	RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)	83	1e-33
6	RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformat...	80	1e-25
7	RS3A_XENTR (Q642T2) 40S ribosomal protein S3a	80	1e-25
8	RS3A_XENLA (Q801S3) 40S ribosomal protein S3a	80	1e-25
9	RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformatio...	80	1e-25
10	RS3A_MOUSE (P97351) 40S ribosomal protein S3a	80	1e-25
11	RS3A_HUMAN (P61247) 40S ribosomal protein S3a	80	1e-25
12	RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a	80	1e-25
13	RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)	80	1e-25
14	RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a	80	1e-25
15	RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)	80	1e-25
16	RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a	79	2e-25
17	RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a	78	4e-25
18	RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a	78	5e-25
19	RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a	80	5e-25
20	RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)	69	5e-25
21	RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)	80	3e-24
22	RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)	65	3e-24
23	RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich prote...	76	5e-24
24	RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)	65	5e-24
25	RS3A_CAEEL (P48154) 40S ribosomal protein S3a	81	1e-23
26	RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)	70	6e-22
27	RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)	65	8e-22
28	RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)	64	1e-21
29	RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a	83	2e-16
30	RS3A_ARCFU (O27964) 30S ribosomal protein S3Ae	29	0.17
31	SAT_RIFPS (Q54506) Sulfate adenylyltransferase (EC 2.7.7.4) (Sul...	30	1.4
32	LTBP3_HUMAN (Q9NS15) Latent transforming growth factor beta-bind...	29	2.3
33	LAT_HUMAN (O43561) Linker for activation of T-cells family membe...	29	2.3
34	HEM0_BRARE (Q9YHT4) 5-aminolevulinate synthase, erythroid-specif...	29	3.0
35	VG78_ICHV1 (Q00167) Hypothetical gene 78 zinc-binding protein	28	4.0
36	ZFN2B_MOUSE (Q91X58) AN1-type zinc finger protein 2B	28	5.2
37	TRUB_PICTO (Q6L1A0) Probable tRNA pseudouridine synthase B (EC 5...	28	6.8
38	ZFN2B_RAT (Q4KLG9) AN1-type zinc finger protein 2B	28	6.8
39	KSGA_LEIXX (Q6ADP1) Dimethyladenosine transferase (EC 2.1.1.-) (...	28	6.8
40	PAK4_HUMAN (O96013) Serine/threonine-protein kinase PAK 4 (EC 2....	28	6.8
41	AMPN_STRLI (Q11010) Aminopeptidase N (EC 3.4.11.2) (Lysyl aminop...	27	8.9
42	MNR2_YEAST (P35724) Manganese resistance protein MNR2	27	8.9
43	NOL3_MOUSE (Q9D1X0) Nucleolar protein 3	27	8.9

>RS3A_ARATH (Q42262) 40S ribosomal protein S3a|
          Length = 261

 Score = 88.6 bits (218), Expect(2) = 4e-36
 Identities = 42/49 (85%), Positives = 45/49 (91%)
 Frame = +2

Query: 134 AVDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           AVDPF+KK WYD+KAP  FT+RN GKTLVSRTQGTKIASEGLKHRVFEV
Sbjct: 19  AVDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEV 67



 Score = 80.9 bits (198), Expect(2) = 4e-36
 Identities = 38/41 (92%), Positives = 38/41 (92%)
 Frame = +3

Query: 285 LADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKL 407
           LADLQNDED AYRKIRLRAEDVQG NVLT FWGMDFTTDKL
Sbjct: 69  LADLQNDEDNAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKL 109

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>RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)|
          Length = 261

 Score = 85.5 bits (210), Expect(2) = 8e-36
 Identities = 41/48 (85%), Positives = 42/48 (87%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           VDPF KK WYDIKAP +F  RN GKTLVSRTQGTKIASEGLKHRVFEV
Sbjct: 20  VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEV 67



 Score = 82.8 bits (203), Expect(2) = 8e-36
 Identities = 39/41 (95%), Positives = 39/41 (95%)
 Frame = +3

Query: 285 LADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKL 407
           LADLQNDEDQAYRKIRLRAEDVQG NVLTNFWGM FTTDKL
Sbjct: 69  LADLQNDEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKL 109

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>RS3A_HELAN (P49198) 40S ribosomal protein S3a|
          Length = 259

 Score = 87.0 bits (214), Expect(2) = 3e-35
 Identities = 41/49 (83%), Positives = 44/49 (89%)
 Frame = +2

Query: 134 AVDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           A DPF+KK WYDIKAP LF +RN GKTLV+RTQGTKIASEGLKHRVFEV
Sbjct: 19  AADPFSKKDWYDIKAPSLFITRNVGKTLVTRTQGTKIASEGLKHRVFEV 67



 Score = 79.3 bits (194), Expect(2) = 3e-35
 Identities = 37/41 (90%), Positives = 38/41 (92%)
 Frame = +3

Query: 285 LADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKL 407
           LADLQNDED +YRKIRLRAEDVQG NVLTNFWGMD TTDKL
Sbjct: 69  LADLQNDEDHSYRKIRLRAEDVQGKNVLTNFWGMDVTTDKL 109

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>RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific protein|
           BIS289)
          Length = 261

 Score = 87.0 bits (214), Expect(2) = 5e-35
 Identities = 42/48 (87%), Positives = 42/48 (87%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           VDPF KK WYDIKAP  FT RN GKTLVSRTQGTKIASEGLKHRVFEV
Sbjct: 20  VDPFAKKDWYDIKAPSSFTHRNVGKTLVSRTQGTKIASEGLKHRVFEV 67



 Score = 78.6 bits (192), Expect(2) = 5e-35
 Identities = 37/41 (90%), Positives = 37/41 (90%)
 Frame = +3

Query: 285 LADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKL 407
           LADL  DEDQAYRKIRLRAEDVQG NVLT FWGMDFTTDKL
Sbjct: 69  LADLNKDEDQAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKL 109

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>RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)|
          Length = 259

 Score = 83.2 bits (204), Expect(2) = 1e-33
 Identities = 38/49 (77%), Positives = 43/49 (87%)
 Frame = +2

Query: 134 AVDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           A DPF KK WYDIKAP +F+ RN GKTLV+RTQGTKIASEGL+HRVFE+
Sbjct: 19  AADPFAKKDWYDIKAPSVFSVRNVGKTLVTRTQGTKIASEGLEHRVFEI 67



 Score = 77.8 bits (190), Expect(2) = 1e-33
 Identities = 35/41 (85%), Positives = 38/41 (92%)
 Frame = +3

Query: 285 LADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKL 407
           LADLQ DED ++RKIRLRAED+QG NVLTNFWGMDFTTDKL
Sbjct: 69  LADLQGDEDHSFRKIRLRAEDIQGKNVLTNFWGMDFTTDKL 109

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>RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformation effector|
           protein)
          Length = 265

 Score = 80.1 bits (196), Expect(2) = 1e-25
 Identities = 37/48 (77%), Positives = 42/48 (87%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           VDPF+KK WYD+KAP +F  RN GKTLV+RTQGTKIAS+GLK RVFEV
Sbjct: 21  VDPFSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEV 68



 Score = 54.3 bits (129), Expect(2) = 1e-25
 Identities = 28/41 (68%), Positives = 31/41 (75%)
 Frame = +3

Query: 285 LADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKL 407
           LADLQNDE  A+RK +L  EDVQG N LTNF GMD T DK+
Sbjct: 70  LADLQNDE-VAFRKFKLITEDVQGKNCLTNFHGMDLTRDKM 109

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>RS3A_XENTR (Q642T2) 40S ribosomal protein S3a|
          Length = 263

 Score = 80.1 bits (196), Expect(2) = 1e-25
 Identities = 37/48 (77%), Positives = 42/48 (87%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           VDPF+KK WYD+KAP +F  RN GKTLV+RTQGTKIAS+GLK RVFEV
Sbjct: 21  VDPFSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEV 68



 Score = 54.3 bits (129), Expect(2) = 1e-25
 Identities = 28/41 (68%), Positives = 31/41 (75%)
 Frame = +3

Query: 285 LADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKL 407
           LADLQNDE  A+RK +L  EDVQG N LTNF GMD T DK+
Sbjct: 70  LADLQNDE-VAFRKFKLITEDVQGKNCLTNFHGMDLTRDKM 109

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>RS3A_XENLA (Q801S3) 40S ribosomal protein S3a|
          Length = 263

 Score = 80.1 bits (196), Expect(2) = 1e-25
 Identities = 37/48 (77%), Positives = 42/48 (87%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           VDPF+KK WYD+KAP +F  RN GKTLV+RTQGTKIAS+GLK RVFEV
Sbjct: 21  VDPFSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEV 68



 Score = 54.3 bits (129), Expect(2) = 1e-25
 Identities = 28/41 (68%), Positives = 31/41 (75%)
 Frame = +3

Query: 285 LADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKL 407
           LADLQNDE  A+RK +L  EDVQG N LTNF GMD T DK+
Sbjct: 70  LADLQNDE-VAFRKFKLITEDVQGKNCLTNFHGMDLTRDKM 109

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>RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformation effector|
           protein) [Contains: 40S ribosomal protein S3b]
          Length = 263

 Score = 80.1 bits (196), Expect(2) = 1e-25
 Identities = 37/48 (77%), Positives = 42/48 (87%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           VDPF+KK WYD+KAP +F  RN GKTLV+RTQGTKIAS+GLK RVFEV
Sbjct: 21  VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEV 68



 Score = 54.3 bits (129), Expect(2) = 1e-25
 Identities = 28/41 (68%), Positives = 31/41 (75%)
 Frame = +3

Query: 285 LADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKL 407
           LADLQNDE  A+RK +L  EDVQG N LTNF GMD T DK+
Sbjct: 70  LADLQNDE-VAFRKFKLITEDVQGKNCLTNFHGMDLTRDKM 109

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>RS3A_MOUSE (P97351) 40S ribosomal protein S3a|
          Length = 263

 Score = 80.1 bits (196), Expect(2) = 1e-25
 Identities = 37/48 (77%), Positives = 42/48 (87%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           VDPF+KK WYD+KAP +F  RN GKTLV+RTQGTKIAS+GLK RVFEV
Sbjct: 21  VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEV 68



 Score = 54.3 bits (129), Expect(2) = 1e-25
 Identities = 28/41 (68%), Positives = 31/41 (75%)
 Frame = +3

Query: 285 LADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKL 407
           LADLQNDE  A+RK +L  EDVQG N LTNF GMD T DK+
Sbjct: 70  LADLQNDE-VAFRKFKLITEDVQGKNCLTNFHGMDLTRDKM 109

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>RS3A_HUMAN (P61247) 40S ribosomal protein S3a|
          Length = 263

 Score = 80.1 bits (196), Expect(2) = 1e-25
 Identities = 37/48 (77%), Positives = 42/48 (87%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           VDPF+KK WYD+KAP +F  RN GKTLV+RTQGTKIAS+GLK RVFEV
Sbjct: 21  VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEV 68



 Score = 54.3 bits (129), Expect(2) = 1e-25
 Identities = 28/41 (68%), Positives = 31/41 (75%)
 Frame = +3

Query: 285 LADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKL 407
           LADLQNDE  A+RK +L  EDVQG N LTNF GMD T DK+
Sbjct: 70  LADLQNDE-VAFRKFKLITEDVQGKNCLTNFHGMDLTRDKM 109

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>RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a|
          Length = 263

 Score = 80.1 bits (196), Expect(2) = 1e-25
 Identities = 37/48 (77%), Positives = 42/48 (87%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           VDPF+KK WYD+KAP +F  RN GKTLV+RTQGTKIAS+GLK RVFEV
Sbjct: 21  VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEV 68



 Score = 54.3 bits (129), Expect(2) = 1e-25
 Identities = 28/41 (68%), Positives = 31/41 (75%)
 Frame = +3

Query: 285 LADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKL 407
           LADLQNDE  A+RK +L  EDVQG N LTNF GMD T DK+
Sbjct: 70  LADLQNDE-VAFRKFKLITEDVQGKNCLTNFHGMDLTRDKM 109

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>RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)|
          Length = 263

 Score = 80.1 bits (196), Expect(2) = 1e-25
 Identities = 37/48 (77%), Positives = 42/48 (87%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           VDPF+KK WYD+KAP +F  RN GKTLV+RTQGTKIAS+GLK RVFEV
Sbjct: 21  VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEV 68



 Score = 54.3 bits (129), Expect(2) = 1e-25
 Identities = 28/41 (68%), Positives = 31/41 (75%)
 Frame = +3

Query: 285 LADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKL 407
           LADLQNDE  A+RK +L  EDVQG N LTNF GMD T DK+
Sbjct: 70  LADLQNDE-VAFRKFKLITEDVQGKNCLTNFHGMDLTRDKM 109

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>RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a|
          Length = 263

 Score = 80.1 bits (196), Expect(2) = 1e-25
 Identities = 37/48 (77%), Positives = 42/48 (87%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           VDPF+KK WYD+KAP +F  RN GKTLV+RTQGTKIAS+GLK RVFEV
Sbjct: 21  VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEV 68



 Score = 54.3 bits (129), Expect(2) = 1e-25
 Identities = 28/41 (68%), Positives = 31/41 (75%)
 Frame = +3

Query: 285 LADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKL 407
           LADLQNDE  A+RK +L  EDVQG N LTNF GMD T DK+
Sbjct: 70  LADLQNDE-VAFRKFKLITEDVQGKNCLTNFHGMDLTRDKM 109

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>RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)|
          Length = 260

 Score = 80.1 bits (196), Expect(2) = 1e-25
 Identities = 37/48 (77%), Positives = 42/48 (87%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           VDPF+KK WYD+KAP +F  RN GKTLV+RTQGTKIAS+GLK RVFEV
Sbjct: 18  VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEV 65



 Score = 54.3 bits (129), Expect(2) = 1e-25
 Identities = 28/41 (68%), Positives = 31/41 (75%)
 Frame = +3

Query: 285 LADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKL 407
           LADLQNDE  A+RK +L  EDVQG N LTNF GMD T DK+
Sbjct: 67  LADLQNDE-VAFRKFKLITEDVQGKNCLTNFHGMDLTRDKM 106

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>RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a|
          Length = 266

 Score = 79.0 bits (193), Expect(2) = 2e-25
 Identities = 36/48 (75%), Positives = 42/48 (87%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           VDPF+KK WYD+KAP +F  RN GKTLV+RTQGT+IAS+GLK RVFEV
Sbjct: 21  VDPFSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTRIASDGLKGRVFEV 68



 Score = 54.3 bits (129), Expect(2) = 2e-25
 Identities = 28/41 (68%), Positives = 31/41 (75%)
 Frame = +3

Query: 285 LADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKL 407
           LADLQNDE  A+RK +L  EDVQG N LTNF GMD T DK+
Sbjct: 70  LADLQNDE-VAFRKFKLVTEDVQGKNCLTNFHGMDLTRDKM 109

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>RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a|
          Length = 263

 Score = 78.2 bits (191), Expect(2) = 4e-25
 Identities = 36/48 (75%), Positives = 41/48 (85%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           VDPF+KK WYD+KAP +F  RN GKTLV+RTQGTKIAS+GLK  VFEV
Sbjct: 21  VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGHVFEV 68



 Score = 54.3 bits (129), Expect(2) = 4e-25
 Identities = 28/41 (68%), Positives = 31/41 (75%)
 Frame = +3

Query: 285 LADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKL 407
           LADLQNDE  A+RK +L  EDVQG N LTNF GMD T DK+
Sbjct: 70  LADLQNDE-VAFRKFKLITEDVQGKNCLTNFHGMDLTRDKM 109

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>RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a|
          Length = 265

 Score = 77.8 bits (190), Expect(2) = 5e-25
 Identities = 35/48 (72%), Positives = 42/48 (87%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           VDPF+KK WYD+KAP +F  RN GKTLV+RTQGT+IAS+GLK RV+EV
Sbjct: 21  VDPFSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTRIASDGLKGRVYEV 68



 Score = 54.3 bits (129), Expect(2) = 5e-25
 Identities = 28/41 (68%), Positives = 31/41 (75%)
 Frame = +3

Query: 285 LADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKL 407
           LADLQNDE  A+RK +L  EDVQG N LTNF GMD T DK+
Sbjct: 70  LADLQNDE-VAFRKFKLITEDVQGKNCLTNFHGMDLTRDKM 109

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>RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a|
          Length = 263

 Score = 80.1 bits (196), Expect(2) = 5e-25
 Identities = 37/48 (77%), Positives = 42/48 (87%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           VDPF+KK WYD+KAP +F  RN GKTLV+RTQGTKIAS+GLK RVFEV
Sbjct: 21  VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEV 68



 Score = 52.0 bits (123), Expect(2) = 5e-25
 Identities = 27/41 (65%), Positives = 30/41 (73%)
 Frame = +3

Query: 285 LADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKL 407
           LADLQNDE  A+RK +L  EDVQG N L NF GMD T DK+
Sbjct: 70  LADLQNDE-VAFRKFKLITEDVQGKNCLINFHGMDLTRDKM 109

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>RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)|
          Length = 255

 Score = 68.9 bits (167), Expect(2) = 5e-25
 Identities = 31/48 (64%), Positives = 39/48 (81%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           VDPFT+K W+DIKAP  F +RN GKTL++R+ G K A++GLK RVFEV
Sbjct: 20  VDPFTRKDWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEV 67



 Score = 63.2 bits (152), Expect(2) = 5e-25
 Identities = 28/41 (68%), Positives = 35/41 (85%)
 Frame = +3

Query: 285 LADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKL 407
           LADLQ  ED +YRKI+LR ++VQG N+LTNF G+DFT+DKL
Sbjct: 69  LADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKL 109

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>RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)|
          Length = 268

 Score = 79.7 bits (195), Expect(2) = 3e-24
 Identities = 36/48 (75%), Positives = 42/48 (87%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           VDPFT+K WYD+KAP +F +R  GKTLV+RTQGTKIAS+GLK RVFEV
Sbjct: 21  VDPFTRKDWYDVKAPNMFKNRQSGKTLVNRTQGTKIASDGLKGRVFEV 68



 Score = 49.7 bits (117), Expect(2) = 3e-24
 Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
 Frame = +3

Query: 285 LADLQNDED--QAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKL 407
           LADLQN+ D  +++RK +L AE V G +VLTNF GM  TTDKL
Sbjct: 70  LADLQNEPDAERSFRKFKLVAESVNGRDVLTNFHGMALTTDKL 112

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>RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)|
          Length = 254

 Score = 65.1 bits (157), Expect(2) = 3e-24
 Identities = 30/48 (62%), Positives = 38/48 (79%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           VDPFT+K+W+DIKAP  F +RN GKTLV+++ G K AS+ LK RV EV
Sbjct: 20  VDPFTRKEWFDIKAPSTFENRNVGKTLVNKSTGLKSASDALKGRVVEV 67



 Score = 64.3 bits (155), Expect(2) = 3e-24
 Identities = 29/41 (70%), Positives = 35/41 (85%)
 Frame = +3

Query: 285 LADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKL 407
           LADLQ  ED ++RKI+LR ++VQG N+LTNF GMDFTTDKL
Sbjct: 69  LADLQGSEDHSFRKIKLRVDEVQGKNLLTNFHGMDFTTDKL 109

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>RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich protein KRP-A)|
          Length = 264

 Score = 75.9 bits (185), Expect(2) = 5e-24
 Identities = 35/48 (72%), Positives = 41/48 (85%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           VDPFTKK+WYD+KAP +F  R  GKTLV+R+QGTKIAS+ LK RVFEV
Sbjct: 21  VDPFTKKEWYDVKAPSMFAVRQIGKTLVTRSQGTKIASDNLKGRVFEV 68



 Score = 52.8 bits (125), Expect(2) = 5e-24
 Identities = 28/41 (68%), Positives = 31/41 (75%)
 Frame = +3

Query: 285 LADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKL 407
           LADLQNDE   +RK +L AE+VQG NVLTNF GM  T DKL
Sbjct: 70  LADLQNDE-VTFRKFKLIAEEVQGRNVLTNFSGMSLTRDKL 109

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>RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)|
          Length = 254

 Score = 64.7 bits (156), Expect(2) = 5e-24
 Identities = 30/48 (62%), Positives = 38/48 (79%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           VDPFT+K+W+DIKAP  F +RN GKTLV+++ G K AS+ LK RV EV
Sbjct: 20  VDPFTRKEWFDIKAPSTFENRNVGKTLVNKSTGLKNASDALKGRVVEV 67



 Score = 63.9 bits (154), Expect(2) = 5e-24
 Identities = 28/41 (68%), Positives = 35/41 (85%)
 Frame = +3

Query: 285 LADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKL 407
           LADLQ  ED ++RK++LR ++VQG N+LTNF GMDFTTDKL
Sbjct: 69  LADLQGSEDHSFRKVKLRVDEVQGKNLLTNFHGMDFTTDKL 109

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>RS3A_CAEEL (P48154) 40S ribosomal protein S3a|
          Length = 256

 Score = 80.9 bits (198), Expect(2) = 1e-23
 Identities = 37/49 (75%), Positives = 44/49 (89%)
 Frame = +2

Query: 134 AVDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           AVDPF++K+WYDIKAP +F +R  GKTL++RTQGTKIASEGLK RVFEV
Sbjct: 18  AVDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEV 66



 Score = 46.2 bits (108), Expect(2) = 1e-23
 Identities = 25/41 (60%), Positives = 27/41 (65%)
 Frame = +3

Query: 285 LADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKL 407
           L DL N E   +RK +L AEDVQG NVLTNF  M  T DKL
Sbjct: 68  LGDLNNSEAD-FRKFKLIAEDVQGKNVLTNFHAMSMTHDKL 107

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>RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)|
          Length = 267

 Score = 69.7 bits (169), Expect(2) = 6e-22
 Identities = 32/48 (66%), Positives = 40/48 (83%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           VDPF++K WYD+KAP +F +R  GKTLV+RTQG +IAS+ LK RVFEV
Sbjct: 21  VDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEV 68



 Score = 52.0 bits (123), Expect(2) = 6e-22
 Identities = 28/42 (66%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
 Frame = +3

Query: 285 LADLQNDED--QAYRKIRLRAEDVQGMNVLTNFWGMDFTTDK 404
           LADLQ D D  +++RK RL AEDVQ  NVL NF GMD TTDK
Sbjct: 70  LADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDK 111

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>RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)|
          Length = 251

 Score = 64.7 bits (156), Expect(2) = 8e-22
 Identities = 29/48 (60%), Positives = 37/48 (77%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           VDPF++K+WYDIKAP  F  +N GKTLV+RT G K A++ LK R+ EV
Sbjct: 20  VDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEV 67



 Score = 56.6 bits (135), Expect(2) = 8e-22
 Identities = 25/45 (55%), Positives = 35/45 (77%)
 Frame = +3

Query: 273 LKYPLADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKL 407
           L+  LADLQ DE+ A+RK++LR ED+QG + LT+F G+  T+DKL
Sbjct: 65  LEVSLADLQKDEEHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKL 109

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>RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)|
          Length = 251

 Score = 63.9 bits (154), Expect(2) = 1e-21
 Identities = 29/48 (60%), Positives = 36/48 (75%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           VDPF++K WYDIKAP  F  +N GKTLV+RT G K A++ LK R+ EV
Sbjct: 20  VDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEV 67



 Score = 57.0 bits (136), Expect(2) = 1e-21
 Identities = 25/45 (55%), Positives = 35/45 (77%)
 Frame = +3

Query: 273 LKYPLADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKL 407
           L+  LADLQ DE+ ++RK++LR ED+QG + LT+F G D T+DKL
Sbjct: 65  LEVSLADLQKDEEHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKL 109

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>RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a|
          Length = 247

 Score = 82.8 bits (203), Expect = 2e-16
 Identities = 46/79 (58%), Positives = 49/79 (62%)
 Frame = +3

Query: 171 SRRRCSSPAATAARPSCPGHRVPRLPQRA*STGCLKYPLADLQNDEDQAYRKIRLRAEDV 350
           S RRC   A T         RV             +  LADLQNDEDQA+RKI+LRAEDV
Sbjct: 42  SGRRCHRTAGTKIASDGLNFRV------------FEVSLADLQNDEDQAFRKIKLRAEDV 89

Query: 351 QGMNVLTNFWGMDFTTDKL 407
           QG NVLTNFWGMDFTTDKL
Sbjct: 90  QGKNVLTNFWGMDFTTDKL 108



 Score = 55.8 bits (133), Expect = 2e-08
 Identities = 29/48 (60%), Positives = 32/48 (66%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNGGKTLVSRTQGTKIASEGLKHRVFEV 280
           VDPF+KK WYDIKAP        G+    RT GTKIAS+GL  RVFEV
Sbjct: 20  VDPFSKKDWYDIKAPPRSRRARSGRR-CHRTAGTKIASDGLNFRVFEV 66

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>RS3A_ARCFU (O27964) 30S ribosomal protein S3Ae|
          Length = 211

 Score = 29.3 bits (64), Expect(2) = 0.17
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +3

Query: 285 LADLQND--EDQAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKL 407
           LA+L ND      Y+K+  +   V G N  T FW  + T + L
Sbjct: 53  LAELTNDYSNQNTYKKLIFKVYRVAGDNAYTKFWRFELTREYL 95



 Score = 22.7 bits (47), Expect(2) = 0.17
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
 Frame = +2

Query: 140 DPFTKKQWYDIKAPLLFTSRNGGKT-------LVSRTQGTKIA 247
           D +T K+W+ + AP  F     G+T       +V RT  T +A
Sbjct: 12  DKWTLKKWFTLIAPEYFGMAELGETPADDASKVVGRTVETTLA 54

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>SAT_RIFPS (Q54506) Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate|
           adenylate transferase) (SAT) (ATP-sulfurylase)
          Length = 437

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 22/57 (38%), Positives = 24/57 (42%), Gaps = 12/57 (21%)
 Frame = -3

Query: 155 SW*TDPRPSSCYPSS-------PWRCACSCRPPWLPLRVEW-----RRCGGWSGGLR 21
           +W T   PS+  PSS       PWR   SCRP  L    E      RR G   G LR
Sbjct: 298 AWVTTTVPSTPRPSSMTKCQRAPWRSRSSCRPHGLLQEAEQDCDDARRAGSHQGRLR 354

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>LTBP3_HUMAN (Q9NS15) Latent transforming growth factor beta-binding protein 3|
            precursor (LTBP-3)
          Length = 1302

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
 Frame = -3

Query: 134  PSSCYPSS----PWRCACSCRPPWLP 69
            P++C P      P    C CRPPW+P
Sbjct: 1088 PAACRPGRCVNLPGSYRCECRPPWVP 1113

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>LAT_HUMAN (O43561) Linker for activation of T-cells family member 1 (36 kDa|
           phospho-tyrosine adapter protein) (pp36) (p36-38)
          Length = 262

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -2

Query: 249 EAILVPCVLDTRVLPPLRLVKSSGALMSYHCFLVNGS 139
           EAILVPCVL   +LP L ++ +    +  HC  + GS
Sbjct: 3   EAILVPCVLGLLLLPILAMLMA----LCVHCHRLPGS 35

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>HEM0_BRARE (Q9YHT4) 5-aminolevulinate synthase, erythroid-specific,|
           mitochondrial precursor (EC 2.3.1.37) (5-aminolevulinic
           acid synthase) (Delta-aminolevulinate synthase)
           (Delta-ALA synthetase) (ALAS-E)
          Length = 583

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 198 RLVKSSGALMSYHCFLVNGSTAFFLLPFLP 109
           RL +  GAL+   CF+ N ST F L   LP
Sbjct: 240 RLHQKDGALVFSSCFVANDSTLFTLAKMLP 269

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>VG78_ICHV1 (Q00167) Hypothetical gene 78 zinc-binding protein|
          Length = 400

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 251 LRQSWYPVSWTRGSCRRCG 195
           L   WYP S TRG+C  CG
Sbjct: 143 LGADWYPKSRTRGTCGYCG 161

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>ZFN2B_MOUSE (Q91X58) AN1-type zinc finger protein 2B|
          Length = 257

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 162 GMTSRRRCSSPAATAARPSCPGHRVPRLPQRA*STGCLKYPLADLQN--DEDQAYRK 326
           G+ S     SP+ T    S P    P+LP R  S      P+  LQN   ED+A ++
Sbjct: 154 GLASTSTAPSPSRTLPSSSSPSRATPQLPTRTAS------PVIALQNGLSEDEALQR 204

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>TRUB_PICTO (Q6L1A0) Probable tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 349

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 247 GNLGTLCPGHEGLAAVAAGEEQRRLDVI 164
           G++GTL PG  G+  +A G+  + +D++
Sbjct: 35  GHIGTLDPGVSGVLVMALGKATKLIDIV 62

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>ZFN2B_RAT (Q4KLG9) AN1-type zinc finger protein 2B|
          Length = 257

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 162 GMTSRRRCSSPAATAARPSCPGHRVPRLPQRA*STGCLKYPLADLQN--DEDQAYRK 326
           G+ S     SP+ T    S P    P+LP R  S      P+  LQN   ED+A ++
Sbjct: 154 GLASTSTVPSPSRTLPSSSSPSRATPQLPPRTTS------PVIALQNGLSEDEALQR 204

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>KSGA_LEIXX (Q6ADP1) Dimethyladenosine transferase (EC 2.1.1.-)|
           (S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
           dimethyltransferase) (16S rRNA dimethylase) (High level
           kasugamycin resistance protein ksgA) (Kasugamycin
           dimethyltransferase)
          Length = 280

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -3

Query: 353 LHILSTESDLPVGLVLIVLKIS*RILQTPGA----SGPLRQSWYPVSWTRGSCRR 201
           LH+L     L  G+V++  ++  RI   PG+    +  ++ +WY V  T G+  R
Sbjct: 136 LHLLERVPSLRSGVVMVQAEVGQRIAAGPGSKVYGAPSVKAAWYGVWRTAGTVSR 190

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>PAK4_HUMAN (O96013) Serine/threonine-protein kinase PAK 4 (EC 2.7.11.1)|
           (p21-activated kinase 4) (PAK-4)
          Length = 591

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 171 SRRRCSSPAATAARPSCPGHRVPRLPQR 254
           S  + + PA T A P+ PG   PR PQR
Sbjct: 267 SEPQLAPPACTPAAPAVPGPPGPRSPQR 294

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>AMPN_STRLI (Q11010) Aminopeptidase N (EC 3.4.11.2) (Lysyl aminopeptidase)|
           (Lys-AP) (Alanine aminopeptidase)
          Length = 857

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +3

Query: 282 PLADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMDFT 395
           P   L ND+D +Y K+RL   D Q + V+T   G DFT
Sbjct: 532 PAVLLLNDDDLSYAKVRL---DEQSLAVVTEHLG-DFT 565

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>MNR2_YEAST (P35724) Manganese resistance protein MNR2|
          Length = 969

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 285  LADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMD 389
            +  + ND +    KI +    V  MNV+T  WGM+
Sbjct: 897  MTKVNNDMNDVLGKITILGTIVLPMNVITGLWGMN 931

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>NOL3_MOUSE (Q9D1X0) Nucleolar protein 3|
          Length = 220

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 213 PSCPGHRVPRLPQRA*STGCLKYPLADLQND 305
           PSCPGH  P  P     T C + P A  Q +
Sbjct: 107 PSCPGHWTPEAPSS--GTTCPELPRASEQEE 135


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,996,772
Number of Sequences: 219361
Number of extensions: 1102476
Number of successful extensions: 3258
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 3133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3254
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result