ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart48b11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192253.1| Oryza sativa (japonica cultivar-group), predic... 86 1e-14
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.003
3dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.003
4dbj|AP004367.4| Oryza sativa (japonica cultivar-group) genomic D... 48 0.003
5gb|AC163032.5| Mus musculus BAC clone RP24-144G20 from chromosom... 38 2.5
6ref|NM_009239.2| Mus musculus trans-acting transcription factor ... 38 2.5
7gb|BC076630.1| Mus musculus trans-acting transcription factor 4,... 38 2.5
8gb|AC163034.4| Mus musculus BAC clone RP23-394C13 from chromosom... 38 2.5
9emb|BX933329.1| Gallus gallus finished cDNA, clone ChEST686j5 38 2.5
10ref|XM_579348.1| PREDICTED: Rattus norvegicus Sp4 transcription ... 38 2.5
11gb|AC154185.1| Mus musculus BAC clone RP24-67L15 from chromosome... 38 2.5
12ref|XM_523398.1| PREDICTED: Pan troglodytes similar to dipeptida... 36 9.7
13gb|AC129945.9| Mus musculus chromosome 3, clone RP24-512A14, com... 36 9.7
14ref|XM_958915.1| Neurospora crassa OR74A hypothetical protein (N... 36 9.7
15gb|BC037243.1| Homo sapiens dipeptidase 3, mRNA (cDNA clone IMAG... 36 9.7
16ref|XM_329241.1| Neurospora crassa OR74A hypothetical protein (N... 36 9.7
17gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 36 9.7
18gb|AC138792.2| Mus musculus BAC clone RP23-235I2 from chromosome... 36 9.7
19emb|BX511265.13| Zebrafish DNA sequence from clone RP71-45G20 in... 36 9.7
20gb|AY358390.1| Homo sapiens clone DNA59817 QPTG834 (UNQ834) mRNA... 36 9.7
21emb|AL354984.17| Human DNA sequence from clone RP13-379L11 on ch... 36 9.7
22emb|BX842623.1| Neurospora crassa DNA linkage group I BAC clone ... 36 9.7
23gb|BC057789.1| Homo sapiens dipeptidase 3, mRNA (cDNA clone MGC:... 36 9.7
24emb|AJ291679.1|HSA291679 Homo sapiens mRNA for putative metallop... 36 9.7
25emb|CR759923.6| Zebrafish DNA sequence from clone CH211-147L19 i... 36 9.7
26dbj|AK057401.1| Homo sapiens cDNA FLJ32839 fis, clone TESTI20033... 36 9.7
27gb|AE010216.1| Pyrococcus furiosus DSM 3638, section 91 of 173 o... 36 9.7
28ref|NM_022357.1| Homo sapiens dipeptidase 3 (DPEP3), mRNA 36 9.7
29ref|XM_695129.1| PREDICTED: Danio rerio similar to armadillo rep... 36 9.7
30gb|AC156996.7| Mus musculus chromosome 3, clone RP23-284A15, com... 36 9.7
31dbj|AB168793.1| Macaca fascicularis testis cDNA, clone: QtsA-148... 36 9.7
32gb|AC009077.7|AC009077 Homo sapiens chromosome 16 clone RP11-331... 36 9.7
33gb|AC040162.5| Homo sapiens chromosome 16 clone CTC-479C5, compl... 36 9.7
34emb|BX470205.12| Zebrafish DNA sequence from clone DKEYP-118B7 i... 36 9.7
35emb|CR392357.6| Zebrafish DNA sequence from clone CH211-196I2 in... 36 9.7
36gb|M75145.1|SMOP53 S.irideus tumor suppressing protein (p53) gen... 36 9.7 
>ref|NM_192253.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1140

 Score = 85.7 bits (43), Expect = 1e-14
 Identities = 58/63 (92%)
 Strand = Plus / Plus

                                                                       
Query: 3   cacggttacacagtgcgcctcgccctggagacacaagaggacctggataagctgagggag 62
           ||||| ||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 244 cacggctacaccgtgcgcctcgccctcgagacccaagaggacctggacaagctgagggag 303

              
Query: 63  atg 65
           |||
Sbjct: 304 atg 306
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 48.1 bits (24), Expect = 0.003
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 38       agaggacctggataagctgagggagatg 65
                |||||||||||| |||||||||||||||
Sbjct: 25638440 agaggacctggacaagctgagggagatg 25638413



 Score = 42.1 bits (21), Expect = 0.16
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 3        cacggttacacagtgcgcctcgccctggagacacaag 39
                ||||| ||||| |||||||||||||| ||||| ||||
Sbjct: 25640737 cacggctacaccgtgcgcctcgccctcgagacccaag 25640701
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>dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0004A09
          Length = 158826

 Score = 48.1 bits (24), Expect = 0.003
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 38    agaggacctggataagctgagggagatg 65
             |||||||||||| |||||||||||||||
Sbjct: 85246 agaggacctggacaagctgagggagatg 85219



 Score = 42.1 bits (21), Expect = 0.16
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 3     cacggttacacagtgcgcctcgccctggagacacaag 39
             ||||| ||||| |||||||||||||| ||||| ||||
Sbjct: 87543 cacggctacaccgtgcgcctcgccctcgagacccaag 87507
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>dbj|AP004367.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0696E01
          Length = 194056

 Score = 48.1 bits (24), Expect = 0.003
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 38     agaggacctggataagctgagggagatg 65
              |||||||||||| |||||||||||||||
Sbjct: 166043 agaggacctggacaagctgagggagatg 166016



 Score = 42.1 bits (21), Expect = 0.16
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                   
Query: 3      cacggttacacagtgcgcctcgccctggagacacaag 39
              ||||| ||||| |||||||||||||| ||||| ||||
Sbjct: 168340 cacggctacaccgtgcgcctcgccctcgagacccaag 168304
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>gb|AC163032.5| Mus musculus BAC clone RP24-144G20 from chromosome 12, complete
             sequence
          Length = 186416

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 28    tggagacacaagaggacct 46
             |||||||||||||||||||
Sbjct: 42299 tggagacacaagaggacct 42317
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>ref|NM_009239.2| Mus musculus trans-acting transcription factor 4 (Sp4), mRNA
          Length = 5699

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 28   tggagacacaagaggacct 46
            |||||||||||||||||||
Sbjct: 3160 tggagacacaagaggacct 3178
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>gb|BC076630.1| Mus musculus trans-acting transcription factor 4, mRNA (cDNA clone
            MGC:100176 IMAGE:30637762), complete cds
          Length = 5450

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 28   tggagacacaagaggacct 46
            |||||||||||||||||||
Sbjct: 3155 tggagacacaagaggacct 3173
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>gb|AC163034.4| Mus musculus BAC clone RP23-394C13 from chromosome 12, complete sequence
          Length = 187877

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 28     tggagacacaagaggacct 46
              |||||||||||||||||||
Sbjct: 151555 tggagacacaagaggacct 151573
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>emb|BX933329.1| Gallus gallus finished cDNA, clone ChEST686j5
          Length = 746

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 40  aggacctggataagctgag 58
           |||||||||||||||||||
Sbjct: 365 aggacctggataagctgag 383
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>ref|XM_579348.1| PREDICTED: Rattus norvegicus Sp4 transcription factor (Sp4), mRNA
          Length = 3459

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 28   tggagacacaagaggacct 46
            |||||||||||||||||||
Sbjct: 3134 tggagacacaagaggacct 3152
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>gb|AC154185.1| Mus musculus BAC clone RP24-67L15 from chromosome 17, complete sequence
          Length = 167726

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 24     gccctggagacacaagagg 42
              |||||||||||||||||||
Sbjct: 138060 gccctggagacacaagagg 138042
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>ref|XM_523398.1| PREDICTED: Pan troglodytes similar to dipeptidase 3; putative
           metallopeptidase (family M19) (LOC468006), mRNA
          Length = 1926

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 15  gtgcgcctcgccctggag 32
           ||||||||||||||||||
Sbjct: 967 gtgcgcctcgccctggag 984
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>gb|AC129945.9| Mus musculus chromosome 3, clone RP24-512A14, complete sequence
          Length = 153430

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 33   acacaagaggacctggat 50
            ||||||||||||||||||
Sbjct: 1422 acacaagaggacctggat 1405
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>ref|XM_958915.1| Neurospora crassa OR74A hypothetical protein (NCU02052.1) partial
           mRNA
          Length = 5613

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 47  ggataagctgagggagat 64
           ||||||||||||||||||
Sbjct: 882 ggataagctgagggagat 899
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>gb|BC037243.1| Homo sapiens dipeptidase 3, mRNA (cDNA clone IMAGE:5171919),
           partial cds
          Length = 1724

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 15  gtgcgcctcgccctggag 32
           ||||||||||||||||||
Sbjct: 541 gtgcgcctcgccctggag 558
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>ref|XM_329241.1| Neurospora crassa OR74A hypothetical protein (NCU02052.1) partial
           mRNA
          Length = 5613

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 47  ggataagctgagggagat 64
           ||||||||||||||||||
Sbjct: 882 ggataagctgagggagat 899
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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 19      gcctcgccctggagacac 36
               ||||||||||||||||||
Sbjct: 1200364 gcctcgccctggagacac 1200347
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>gb|AC138792.2| Mus musculus BAC clone RP23-235I2 from chromosome 8, complete sequence
          Length = 181841

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 27    ctggagacacaagaggac 44
             ||||||||||||||||||
Sbjct: 52157 ctggagacacaagaggac 52140
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>emb|BX511265.13| Zebrafish DNA sequence from clone RP71-45G20 in linkage group 9,
             complete sequence
          Length = 183988

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 48    gataagctgagggagatg 65
             ||||||||||||||||||
Sbjct: 14103 gataagctgagggagatg 14086
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>gb|AY358390.1| Homo sapiens clone DNA59817 QPTG834 (UNQ834) mRNA, complete cds
          Length = 1661

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 15  gtgcgcctcgccctggag 32
           ||||||||||||||||||
Sbjct: 552 gtgcgcctcgccctggag 569
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>emb|AL354984.17| Human DNA sequence from clone RP13-379L11 on chromosome 20 Contains a
            putative novel gene, ESTs, STSs and GSSs, complete
            sequence
          Length = 207694

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 19   gcctcgccctggagacac 36
            ||||||||||||||||||
Sbjct: 4685 gcctcgccctggagacac 4668
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>emb|BX842623.1| Neurospora crassa DNA linkage group I BAC clone B2I10
          Length = 83703

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 47    ggataagctgagggagat 64
             ||||||||||||||||||
Sbjct: 11001 ggataagctgagggagat 10984
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>gb|BC057789.1| Homo sapiens dipeptidase 3, mRNA (cDNA clone MGC:71629
           IMAGE:5297958), complete cds
          Length = 1693

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 15  gtgcgcctcgccctggag 32
           ||||||||||||||||||
Sbjct: 570 gtgcgcctcgccctggag 587
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>emb|AJ291679.1|HSA291679 Homo sapiens mRNA for putative metallopeptidase (family M19)
          Length = 1670

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 15  gtgcgcctcgccctggag 32
           ||||||||||||||||||
Sbjct: 543 gtgcgcctcgccctggag 560
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>emb|CR759923.6| Zebrafish DNA sequence from clone CH211-147L19 in linkage group 21,
             complete sequence
          Length = 147564

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 22    tcgccctggagacacaag 39
             ||||||||||||||||||
Sbjct: 27238 tcgccctggagacacaag 27221
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>dbj|AK057401.1| Homo sapiens cDNA FLJ32839 fis, clone TESTI2003311, highly similar
           to Homo sapiens mRNA for putative metallopeptidase
           (family M19)
          Length = 1737

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 15  gtgcgcctcgccctggag 32
           ||||||||||||||||||
Sbjct: 629 gtgcgcctcgccctggag 646
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>gb|AE010216.1| Pyrococcus furiosus DSM 3638, section 91 of 173 of the complete
            genome
          Length = 9899

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 47   ggataagctgagggagat 64
            ||||||||||||||||||
Sbjct: 1387 ggataagctgagggagat 1370
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>ref|NM_022357.1| Homo sapiens dipeptidase 3 (DPEP3), mRNA
          Length = 1670

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 15  gtgcgcctcgccctggag 32
           ||||||||||||||||||
Sbjct: 543 gtgcgcctcgccctggag 560
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>ref|XM_695129.1| PREDICTED: Danio rerio similar to armadillo repeat containing 8
            (LOC571528), mRNA
          Length = 1926

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 48   gataagctgagggagatg 65
            ||||||||||||||||||
Sbjct: 1816 gataagctgagggagatg 1833
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>gb|AC156996.7| Mus musculus chromosome 3, clone RP23-284A15, complete sequence
          Length = 184908

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 33    acacaagaggacctggat 50
             ||||||||||||||||||
Sbjct: 38049 acacaagaggacctggat 38066
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>dbj|AB168793.1| Macaca fascicularis testis cDNA, clone: QtsA-14814, similar to
           human dipeptidase 3 (DPEP3), mRNA, RefSeq: NM_022357.1
          Length = 1700

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 15  gtgcgcctcgccctggag 32
           ||||||||||||||||||
Sbjct: 572 gtgcgcctcgccctggag 589
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>gb|AC009077.7|AC009077 Homo sapiens chromosome 16 clone RP11-331B16, complete sequence
          Length = 185167

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 15     gtgcgcctcgccctggag 32
              ||||||||||||||||||
Sbjct: 125987 gtgcgcctcgccctggag 126004
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>gb|AC040162.5| Homo sapiens chromosome 16 clone CTC-479C5, complete sequence
          Length = 217470

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 15    gtgcgcctcgccctggag 32
             ||||||||||||||||||
Sbjct: 37296 gtgcgcctcgccctggag 37313
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>emb|BX470205.12| Zebrafish DNA sequence from clone DKEYP-118B7 in linkage group 9,
             complete sequence
          Length = 41140

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 48    gataagctgagggagatg 65
             ||||||||||||||||||
Sbjct: 27756 gataagctgagggagatg 27739
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>emb|CR392357.6| Zebrafish DNA sequence from clone CH211-196I2 in linkage group 21,
             complete sequence
          Length = 136791

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 22    tcgccctggagacacaag 39
             ||||||||||||||||||
Sbjct: 88223 tcgccctggagacacaag 88240
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>gb|M75145.1|SMOP53 S.irideus tumor suppressing protein (p53) gene, complete cds
          Length = 2342

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 25  ccctggagacacaagagg 42
           ||||||||||||||||||
Sbjct: 941 ccctggagacacaagagg 958


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 397,214
Number of Sequences: 3902068
Number of extensions: 397214
Number of successful extensions: 26722
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26661
Number of HSP's gapped (non-prelim): 61
length of query: 65
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 44
effective length of database: 17,151,101,840
effective search space: 754648480960
effective search space used: 754648480960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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