ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart48b06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467876.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1193 Score = 157 bits (79), Expect = 5e-35 Identities = 187/223 (83%) Strand = Plus / Plus Query: 196 catgggcgcgaggcggcgcatggagctgtaccggccggacccggccgacatgctctccta 255 |||||| || ||||||||||||||||||||| ||| |||||||| |||||||||||||| Sbjct: 179 catgggtgcaaggcggcgcatggagctgtacaagccagacccggctgacatgctctccta 238 Query: 256 ccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacggcaactt 315 ||||| |||||||||||||| ||| ||||| | |||||| || |||||||||||| || Sbjct: 239 ccacagcggcgccgtgctccagggcaacatcccggtgtccatctactggtacggcaagtt 298 Query: 316 taagccggcgcagaaggcggtgatcctcgacttcctcctctcgctcaccgccgagcctca 375 | ||||||||||||| || | || ||||||||||||| |||||| | | | ||| | Sbjct: 299 cacgccggcgcagaagtcgatactcttcgacttcctcctgtcgctctcggtggcgcccta 358 Query: 376 ggccgcctcgccgtccgtcgcgcagtggtggggcaccatcgac 418 |||||| |||||||||| |||||||||||| ||| ||||||| Sbjct: 359 cgccgccgcgccgtccgttgcgcagtggtggagcagcatcgac 401 Score = 46.1 bits (23), Expect = 0.13 Identities = 62/75 (82%) Strand = Plus / Plus Query: 509 tgctccatgggcaagtccctcaccctcgagcagatcaccgccctggccgcgacggctaaa 568 ||||||||||||||||| |||||||| | ||| || ||||||| || ||| ||| || Sbjct: 495 tgctccatgggcaagtcgctcaccctggcgcaagtcgccgccctagcggcgcaggccaag 554 Query: 569 cccaagaaaggcggc 583 |||||||| |||||| Sbjct: 555 cccaagaagggcggc 569
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 157 bits (79), Expect = 5e-35 Identities = 187/223 (83%) Strand = Plus / Minus Query: 196 catgggcgcgaggcggcgcatggagctgtaccggccggacccggccgacatgctctccta 255 |||||| || ||||||||||||||||||||| ||| |||||||| |||||||||||||| Sbjct: 31854668 catgggtgcaaggcggcgcatggagctgtacaagccagacccggctgacatgctctccta 31854609 Query: 256 ccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacggcaactt 315 ||||| |||||||||||||| ||| ||||| | |||||| || |||||||||||| || Sbjct: 31854608 ccacagcggcgccgtgctccagggcaacatcccggtgtccatctactggtacggcaagtt 31854549 Query: 316 taagccggcgcagaaggcggtgatcctcgacttcctcctctcgctcaccgccgagcctca 375 | ||||||||||||| || | || ||||||||||||| |||||| | | | ||| | Sbjct: 31854548 cacgccggcgcagaagtcgatactcttcgacttcctcctgtcgctctcggtggcgcccta 31854489 Query: 376 ggccgcctcgccgtccgtcgcgcagtggtggggcaccatcgac 418 |||||| |||||||||| |||||||||||| ||| ||||||| Sbjct: 31854488 cgccgccgcgccgtccgttgcgcagtggtggagcagcatcgac 31854446 Score = 89.7 bits (45), Expect = 1e-14 Identities = 120/145 (82%) Strand = Plus / Minus Query: 278 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 337 ||||||||| | |||||| |||||||||||||||| || | |||| |||||| | || | Sbjct: 31843510 ggcgacatcccggtgtccatcctctggtacggcaaattcacgccgacgcagatgtcgatc 31843451 Query: 338 atcctcgacttcctcctctcgctcaccgccgagcctcaggccgcctcgccgtccgtcgcg 397 ||| ||||||| || |||||||||||| || ||| | || ||| ||||||| |||| | Sbjct: 31843450 atcgccgacttcgtcgtctcgctcaccggcgcgccgaacgcggccacgccgtcggtcggg 31843391 Query: 398 cagtggtggggcaccatcgaccagc 422 |||||||||||||||||||| |||| Sbjct: 31843390 cagtggtggggcaccatcgaacagc 31843366 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 278 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 337 ||||||||| ||||||| ||| ||||||||||| ||| | ||||||||||||||| || Sbjct: 31860010 ggcgacatccccgtgtcggtcgtctggtacggccgcttcacgccggcgcagaaggccgtc 31859951 Query: 338 atcctcgacttcctcctctcgctcaccg 365 || |||||||||||||| |||||||| Sbjct: 31859950 gtctccgacttcctcctcttgctcaccg 31859923 Score = 46.1 bits (23), Expect = 0.13 Identities = 62/75 (82%) Strand = Plus / Minus Query: 509 tgctccatgggcaagtccctcaccctcgagcagatcaccgccctggccgcgacggctaaa 568 ||||||||||||||||| |||||||| | ||| || ||||||| || ||| ||| || Sbjct: 31854352 tgctccatgggcaagtcgctcaccctggcgcaagtcgccgccctagcggcgcaggccaag 31854293 Query: 569 cccaagaaaggcggc 583 |||||||| |||||| Sbjct: 31854292 cccaagaagggcggc 31854278
>dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0471A11 Length = 157740 Score = 157 bits (79), Expect = 5e-35 Identities = 187/223 (83%) Strand = Plus / Minus Query: 196 catgggcgcgaggcggcgcatggagctgtaccggccggacccggccgacatgctctccta 255 |||||| || ||||||||||||||||||||| ||| |||||||| |||||||||||||| Sbjct: 15669 catgggtgcaaggcggcgcatggagctgtacaagccagacccggctgacatgctctccta 15610 Query: 256 ccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacggcaactt 315 ||||| |||||||||||||| ||| ||||| | |||||| || |||||||||||| || Sbjct: 15609 ccacagcggcgccgtgctccagggcaacatcccggtgtccatctactggtacggcaagtt 15550 Query: 316 taagccggcgcagaaggcggtgatcctcgacttcctcctctcgctcaccgccgagcctca 375 | ||||||||||||| || | || ||||||||||||| |||||| | | | ||| | Sbjct: 15549 cacgccggcgcagaagtcgatactcttcgacttcctcctgtcgctctcggtggcgcccta 15490 Query: 376 ggccgcctcgccgtccgtcgcgcagtggtggggcaccatcgac 418 |||||| |||||||||| |||||||||||| ||| ||||||| Sbjct: 15489 cgccgccgcgccgtccgttgcgcagtggtggagcagcatcgac 15447 Score = 89.7 bits (45), Expect = 1e-14 Identities = 120/145 (82%) Strand = Plus / Minus Query: 278 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 337 ||||||||| | |||||| |||||||||||||||| || | |||| |||||| | || | Sbjct: 4511 ggcgacatcccggtgtccatcctctggtacggcaaattcacgccgacgcagatgtcgatc 4452 Query: 338 atcctcgacttcctcctctcgctcaccgccgagcctcaggccgcctcgccgtccgtcgcg 397 ||| ||||||| || |||||||||||| || ||| | || ||| ||||||| |||| | Sbjct: 4451 atcgccgacttcgtcgtctcgctcaccggcgcgccgaacgcggccacgccgtcggtcggg 4392 Query: 398 cagtggtggggcaccatcgaccagc 422 |||||||||||||||||||| |||| Sbjct: 4391 cagtggtggggcaccatcgaacagc 4367 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 278 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 337 ||||||||| ||||||| ||| ||||||||||| ||| | ||||||||||||||| || Sbjct: 21011 ggcgacatccccgtgtcggtcgtctggtacggccgcttcacgccggcgcagaaggccgtc 20952 Query: 338 atcctcgacttcctcctctcgctcaccg 365 || |||||||||||||| |||||||| Sbjct: 20951 gtctccgacttcctcctcttgctcaccg 20924 Score = 46.1 bits (23), Expect = 0.13 Identities = 62/75 (82%) Strand = Plus / Minus Query: 509 tgctccatgggcaagtccctcaccctcgagcagatcaccgccctggccgcgacggctaaa 568 ||||||||||||||||| |||||||| | ||| || ||||||| || ||| ||| || Sbjct: 15353 tgctccatgggcaagtcgctcaccctggcgcaagtcgccgccctagcggcgcaggccaag 15294 Query: 569 cccaagaaaggcggc 583 |||||||| |||||| Sbjct: 15293 cccaagaagggcggc 15279
>dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0627E03 Length = 159861 Score = 157 bits (79), Expect = 5e-35 Identities = 187/223 (83%) Strand = Plus / Minus Query: 196 catgggcgcgaggcggcgcatggagctgtaccggccggacccggccgacatgctctccta 255 |||||| || ||||||||||||||||||||| ||| |||||||| |||||||||||||| Sbjct: 150466 catgggtgcaaggcggcgcatggagctgtacaagccagacccggctgacatgctctccta 150407 Query: 256 ccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacggcaactt 315 ||||| |||||||||||||| ||| ||||| | |||||| || |||||||||||| || Sbjct: 150406 ccacagcggcgccgtgctccagggcaacatcccggtgtccatctactggtacggcaagtt 150347 Query: 316 taagccggcgcagaaggcggtgatcctcgacttcctcctctcgctcaccgccgagcctca 375 | ||||||||||||| || | || ||||||||||||| |||||| | | | ||| | Sbjct: 150346 cacgccggcgcagaagtcgatactcttcgacttcctcctgtcgctctcggtggcgcccta 150287 Query: 376 ggccgcctcgccgtccgtcgcgcagtggtggggcaccatcgac 418 |||||| |||||||||| |||||||||||| ||| ||||||| Sbjct: 150286 cgccgccgcgccgtccgttgcgcagtggtggagcagcatcgac 150244 Score = 89.7 bits (45), Expect = 1e-14 Identities = 120/145 (82%) Strand = Plus / Minus Query: 278 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 337 ||||||||| | |||||| |||||||||||||||| || | |||| |||||| | || | Sbjct: 139308 ggcgacatcccggtgtccatcctctggtacggcaaattcacgccgacgcagatgtcgatc 139249 Query: 338 atcctcgacttcctcctctcgctcaccgccgagcctcaggccgcctcgccgtccgtcgcg 397 ||| ||||||| || |||||||||||| || ||| | || ||| ||||||| |||| | Sbjct: 139248 atcgccgacttcgtcgtctcgctcaccggcgcgccgaacgcggccacgccgtcggtcggg 139189 Query: 398 cagtggtggggcaccatcgaccagc 422 |||||||||||||||||||| |||| Sbjct: 139188 cagtggtggggcaccatcgaacagc 139164 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 278 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 337 ||||||||| ||||||| ||| ||||||||||| ||| | ||||||||||||||| || Sbjct: 155808 ggcgacatccccgtgtcggtcgtctggtacggccgcttcacgccggcgcagaaggccgtc 155749 Query: 338 atcctcgacttcctcctctcgctcaccg 365 || |||||||||||||| |||||||| Sbjct: 155748 gtctccgacttcctcctcttgctcaccg 155721 Score = 46.1 bits (23), Expect = 0.13 Identities = 62/75 (82%) Strand = Plus / Minus Query: 509 tgctccatgggcaagtccctcaccctcgagcagatcaccgccctggccgcgacggctaaa 568 ||||||||||||||||| |||||||| | ||| || ||||||| || ||| ||| || Sbjct: 150150 tgctccatgggcaagtcgctcaccctggcgcaagtcgccgccctagcggcgcaggccaag 150091 Query: 569 cccaagaaaggcggc 583 |||||||| |||||| Sbjct: 150090 cccaagaagggcggc 150076
>dbj|AK062900.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-F03, full insert sequence Length = 1193 Score = 157 bits (79), Expect = 5e-35 Identities = 187/223 (83%) Strand = Plus / Plus Query: 196 catgggcgcgaggcggcgcatggagctgtaccggccggacccggccgacatgctctccta 255 |||||| || ||||||||||||||||||||| ||| |||||||| |||||||||||||| Sbjct: 179 catgggtgcaaggcggcgcatggagctgtacaagccagacccggctgacatgctctccta 238 Query: 256 ccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacggcaactt 315 ||||| |||||||||||||| ||| ||||| | |||||| || |||||||||||| || Sbjct: 239 ccacagcggcgccgtgctccagggcaacatcccggtgtccatctactggtacggcaagtt 298 Query: 316 taagccggcgcagaaggcggtgatcctcgacttcctcctctcgctcaccgccgagcctca 375 | ||||||||||||| || | || ||||||||||||| |||||| | | | ||| | Sbjct: 299 cacgccggcgcagaagtcgatactcttcgacttcctcctgtcgctctcggtggcgcccta 358 Query: 376 ggccgcctcgccgtccgtcgcgcagtggtggggcaccatcgac 418 |||||| |||||||||| |||||||||||| ||| ||||||| Sbjct: 359 cgccgccgcgccgtccgttgcgcagtggtggagcagcatcgac 401 Score = 46.1 bits (23), Expect = 0.13 Identities = 62/75 (82%) Strand = Plus / Plus Query: 509 tgctccatgggcaagtccctcaccctcgagcagatcaccgccctggccgcgacggctaaa 568 ||||||||||||||||| |||||||| | ||| || ||||||| || ||| ||| || Sbjct: 495 tgctccatgggcaagtcgctcaccctggcgcaagtcgccgccctagcggcgcaggccaag 554 Query: 569 cccaagaaaggcggc 583 |||||||| |||||| Sbjct: 555 cccaagaagggcggc 569
>ref|XM_506983.1| PREDICTED Oryza sativa (japonica cultivar-group), P0627E03.37-2 mRNA Length = 1129 Score = 89.7 bits (45), Expect = 1e-14 Identities = 120/145 (82%) Strand = Plus / Plus Query: 278 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 337 ||||||||| | |||||| |||||||||||||||| || | |||| |||||| | || | Sbjct: 246 ggcgacatcccggtgtccatcctctggtacggcaaattcacgccgacgcagatgtcgatc 305 Query: 338 atcctcgacttcctcctctcgctcaccgccgagcctcaggccgcctcgccgtccgtcgcg 397 ||| ||||||| || |||||||||||| || ||| | || ||| ||||||| |||| | Sbjct: 306 atcgccgacttcgtcgtctcgctcaccggcgcgccgaacgcggccacgccgtcggtcggg 365 Query: 398 cagtggtggggcaccatcgaccagc 422 |||||||||||||||||||| |||| Sbjct: 366 cagtggtggggcaccatcgaacagc 390
>ref|XM_467873.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1127 Score = 89.7 bits (45), Expect = 1e-14 Identities = 120/145 (82%) Strand = Plus / Plus Query: 278 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 337 ||||||||| | |||||| |||||||||||||||| || | |||| |||||| | || | Sbjct: 244 ggcgacatcccggtgtccatcctctggtacggcaaattcacgccgacgcagatgtcgatc 303 Query: 338 atcctcgacttcctcctctcgctcaccgccgagcctcaggccgcctcgccgtccgtcgcg 397 ||| ||||||| || |||||||||||| || ||| | || ||| ||||||| |||| | Sbjct: 304 atcgccgacttcgtcgtctcgctcaccggcgcgccgaacgcggccacgccgtcggtcggg 363 Query: 398 cagtggtggggcaccatcgaccagc 422 |||||||||||||||||||| |||| Sbjct: 364 cagtggtggggcaccatcgaacagc 388
>ref|XM_467872.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1110 Score = 89.7 bits (45), Expect = 1e-14 Identities = 120/145 (82%) Strand = Plus / Plus Query: 278 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 337 ||||||||| | |||||| |||||||||||||||| || | |||| |||||| | || | Sbjct: 245 ggcgacatcccggtgtccatcctctggtacggcaaattcacgccgacgcagatgtcgatc 304 Query: 338 atcctcgacttcctcctctcgctcaccgccgagcctcaggccgcctcgccgtccgtcgcg 397 ||| ||||||| || |||||||||||| || ||| | || ||| ||||||| |||| | Sbjct: 305 atcgccgacttcgtcgtctcgctcaccggcgcgccgaacgcggccacgccgtcggtcggg 364 Query: 398 cagtggtggggcaccatcgaccagc 422 |||||||||||||||||||| |||| Sbjct: 365 cagtggtggggcaccatcgaacagc 389
>dbj|AK119695.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-C06, full insert sequence Length = 1110 Score = 89.7 bits (45), Expect = 1e-14 Identities = 120/145 (82%) Strand = Plus / Plus Query: 278 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 337 ||||||||| | |||||| |||||||||||||||| || | |||| |||||| | || | Sbjct: 245 ggcgacatcccggtgtccatcctctggtacggcaaattcacgccgacgcagatgtcgatc 304 Query: 338 atcctcgacttcctcctctcgctcaccgccgagcctcaggccgcctcgccgtccgtcgcg 397 ||| ||||||| || |||||||||||| || ||| | || ||| ||||||| |||| | Sbjct: 305 atcgccgacttcgtcgtctcgctcaccggcgcgccgaacgcggccacgccgtcggtcggg 364 Query: 398 cagtggtggggcaccatcgaccagc 422 |||||||||||||||||||| |||| Sbjct: 365 cagtggtggggcaccatcgaacagc 389
>dbj|AK101655.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057F02, full insert sequence Length = 1128 Score = 89.7 bits (45), Expect = 1e-14 Identities = 120/145 (82%) Strand = Plus / Plus Query: 278 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 337 ||||||||| | |||||| |||||||||||||||| || | |||| |||||| | || | Sbjct: 246 ggcgacatcccggtgtccatcctctggtacggcaaattcacgccgacgcagatgtcgatc 305 Query: 338 atcctcgacttcctcctctcgctcaccgccgagcctcaggccgcctcgccgtccgtcgcg 397 ||| ||||||| || |||||||||||| || ||| | || ||| ||||||| |||| | Sbjct: 306 atcgccgacttcgtcgtctcgctcaccggcgcgccgaacgcggccacgccgtcggtcggg 365 Query: 398 cagtggtggggcaccatcgaccagc 422 |||||||||||||||||||| |||| Sbjct: 366 cagtggtggggcaccatcgaacagc 390
>dbj|AK063454.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-G05, full insert sequence Length = 1127 Score = 89.7 bits (45), Expect = 1e-14 Identities = 120/145 (82%) Strand = Plus / Plus Query: 278 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 337 ||||||||| | |||||| |||||||||||||||| || | |||| |||||| | || | Sbjct: 244 ggcgacatcccggtgtccatcctctggtacggcaaattcacgccgacgcagatgtcgatc 303 Query: 338 atcctcgacttcctcctctcgctcaccgccgagcctcaggccgcctcgccgtccgtcgcg 397 ||| ||||||| || |||||||||||| || ||| | || ||| ||||||| |||| | Sbjct: 304 atcgccgacttcgtcgtctcgctcaccggcgcgccgaacgcggccacgccgtcggtcggg 363 Query: 398 cagtggtggggcaccatcgaccagc 422 |||||||||||||||||||| |||| Sbjct: 364 cagtggtggggcaccatcgaacagc 388
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 81.8 bits (41), Expect = 2e-12 Identities = 95/113 (84%) Strand = Plus / Minus Query: 254 taccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacggcaac 313 |||||||||||||||||||| |||||||||| ||||||| |||||||||||||| Sbjct: 6192116 taccacaatggcgccgtgctgagcggcgacatccccgtgtcgatcctctggtacggccgg 6192057 Query: 314 tttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctcaccgc 366 || | ||||||||||||||| || || ||||||| ||||||||||| |||| Sbjct: 6192056 ttcacgccggcgcagaaggccgtcgtcaccgacttcgtcctctcgctcgccgc 6192004 Score = 61.9 bits (31), Expect = 2e-06 Identities = 94/115 (81%) Strand = Plus / Plus Query: 249 tctcctaccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacg 308 ||||||||||| |||||||||||| ||||||||| |||| || || | ||||||| Sbjct: 6210462 tctcctaccacggcggcgccgtgctcggcggcgacattcccgtcaccctcgtgtggtacg 6210521 Query: 309 gcaactttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctcac 363 | || || ||||||||||||||||| | || |||||||||||||||| ||||| Sbjct: 6210522 ggaagttcaagccggcgcagaaggccatcgtcgtcgacttcctcctctccctcac 6210576
>dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0436F11 Length = 165550 Score = 81.8 bits (41), Expect = 2e-12 Identities = 95/113 (84%) Strand = Plus / Minus Query: 254 taccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacggcaac 313 |||||||||||||||||||| |||||||||| ||||||| |||||||||||||| Sbjct: 105935 taccacaatggcgccgtgctgagcggcgacatccccgtgtcgatcctctggtacggccgg 105876 Query: 314 tttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctcaccgc 366 || | ||||||||||||||| || || ||||||| ||||||||||| |||| Sbjct: 105875 ttcacgccggcgcagaaggccgtcgtcaccgacttcgtcctctcgctcgccgc 105823 Score = 61.9 bits (31), Expect = 2e-06 Identities = 94/115 (81%) Strand = Plus / Plus Query: 249 tctcctaccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacg 308 ||||||||||| |||||||||||| ||||||||| |||| || || | ||||||| Sbjct: 124281 tctcctaccacggcggcgccgtgctcggcggcgacattcccgtcaccctcgtgtggtacg 124340 Query: 309 gcaactttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctcac 363 | || || ||||||||||||||||| | || |||||||||||||||| ||||| Sbjct: 124341 ggaagttcaagccggcgcagaaggccatcgtcgtcgacttcctcctctccctcac 124395
>gb|AY570727.1| Oryza sativa (japonica cultivar-group) putative phi-1-like phosphate-induced protein mRNA, partial cds Length = 874 Score = 81.8 bits (41), Expect = 2e-12 Identities = 95/113 (84%) Strand = Plus / Plus Query: 254 taccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacggcaac 313 |||||||||||||||||||| |||||||||| ||||||| |||||||||||||| Sbjct: 183 taccacaatggcgccgtgctgagcggcgacatccccgtgtcgatcctctggtacggccgg 242 Query: 314 tttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctcaccgc 366 || | ||||||||||||||| || || ||||||| ||||||||||| |||| Sbjct: 243 ttcacgccggcgcagaaggccgtcgtcaccgacttcgtcctctcgctcgccgc 295
>dbj|AK099621.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013053E02, full insert sequence Length = 837 Score = 79.8 bits (40), Expect = 9e-12 Identities = 91/108 (84%) Strand = Plus / Minus Query: 254 taccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacggcaac 313 |||||||||||||||||||| |||||||||| ||||||| |||||||||||||| Sbjct: 539 taccacaatggcgccgtgctgagcggcgacatccccgtgtcgatcctctggtacggccgg 480 Query: 314 tttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctc 361 || | ||||||||||||||| || || ||||||| ||||||||||| Sbjct: 479 ttcacgccggcgcagaaggccgtcgtcaccgacttcgtcctctcgctc 432
>dbj|AK061401.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-G10, full insert sequence Length = 962 Score = 75.8 bits (38), Expect = 1e-10 Identities = 92/110 (83%) Strand = Plus / Plus Query: 257 cacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacggcaacttt 316 ||||||||||||||||| |||||||||| ||||||| |||||||||||||| || Sbjct: 1 cacaatggcgccgtgctgagcggcgacatccccgtgtcgatcctctggtacggccggttc 60 Query: 317 aagccggcgcagaaggcggtgatcctcgacttcctcctctcgctcaccgc 366 | ||||||||||||||| || || ||||||| ||||||||||| |||| Sbjct: 61 acgccggcgcagaaggccgtcgtcaccgacttcgtcctctcgctcgccgc 110
>ref|XM_467877.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1222 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Plus Query: 278 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 337 ||||||||| ||||||| ||| ||||||||||| ||| | ||||||||||||||| || Sbjct: 252 ggcgacatccccgtgtcggtcgtctggtacggccgcttcacgccggcgcagaaggccgtc 311 Query: 338 atcctcgacttcctcctctcgctcaccg 365 || |||||||||||||| |||||||| Sbjct: 312 gtctccgacttcctcctcttgctcaccg 339
>dbj|AK063605.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-C09, full insert sequence Length = 1222 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Plus Query: 278 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 337 ||||||||| ||||||| ||| ||||||||||| ||| | ||||||||||||||| || Sbjct: 252 ggcgacatccccgtgtcggtcgtctggtacggccgcttcacgccggcgcagaaggccgtc 311 Query: 338 atcctcgacttcctcctctcgctcaccg 365 || |||||||||||||| |||||||| Sbjct: 312 gtctccgacttcctcctcttgctcaccg 339
>dbj|AP004727.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0516A04 Length = 145107 Score = 61.9 bits (31), Expect = 2e-06 Identities = 94/115 (81%) Strand = Plus / Plus Query: 249 tctcctaccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacg 308 ||||||||||| |||||||||||| ||||||||| |||| || || | ||||||| Sbjct: 4538 tctcctaccacggcggcgccgtgctcggcggcgacattcccgtcaccctcgtgtggtacg 4597 Query: 309 gcaactttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctcac 363 | || || ||||||||||||||||| | || |||||||||||||||| ||||| Sbjct: 4598 ggaagttcaagccggcgcagaaggccatcgtcgtcgacttcctcctctccctcac 4652
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 256 ccacaatggcgccgtgctcca 276 ||||||||||||||||||||| Sbjct: 382173 ccacaatggcgccgtgctcca 382193
>emb|AL391744.1|SPAC17D4 S.pombe chromosome I cosmid c17D4 Length = 7856 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 tcgacttcctcctctcgctca 362 ||||||||||||||||||||| Sbjct: 2045 tcgacttcctcctctcgctca 2025
>ref|NM_001020121.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC17D4.02), partial mRNA Length = 1917 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 tcgacttcctcctctcgctca 362 ||||||||||||||||||||| Sbjct: 506 tcgacttcctcctctcgctca 486
>dbj|AB001739.1| Schizosaccharomyces pombe DNA for SNA41, partial cds Length = 4350 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 tcgacttcctcctctcgctca 362 ||||||||||||||||||||| Sbjct: 1398 tcgacttcctcctctcgctca 1378
>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete sequence Length = 1783081 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 tcgacttcctcctctcgctc 361 |||||||||||||||||||| Sbjct: 1422294 tcgacttcctcctctcgctc 1422275
>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete sequence Length = 2105742 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 gtgctccacggcgacatcgc 288 |||||||||||||||||||| Sbjct: 448222 gtgctccacggcgacatcgc 448241
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 535 cgagcagatcaccgccctgg 554 |||||||||||||||||||| Sbjct: 800614 cgagcagatcaccgccctgg 800633
>ref|XM_569506.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNC01620) partial mRNA Length = 4007 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 gtgctccacggcgacatcgc 288 |||||||||||||||||||| Sbjct: 1804 gtgctccacggcgacatcgc 1785
>ref|XM_570056.1| Cryptococcus neoformans var. neoformans JEC21 guanine nucleotide exchange factor (CND05200) partial mRNA Length = 4731 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 tcgacttcctcctctcgctc 361 |||||||||||||||||||| Sbjct: 25 tcgacttcctcctctcgctc 44
>ref|XM_570057.1| Cryptococcus neoformans var. neoformans JEC21 guanine nucleotide exchange factor (CND05200) partial mRNA Length = 4617 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 tcgacttcctcctctcgctc 361 |||||||||||||||||||| Sbjct: 25 tcgacttcctcctctcgctc 44
>gb|AC125787.2| Homo sapiens chromosome 5 clone CTD-2137I20, complete sequence Length = 117180 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 ccacagcccacaaagtgctc 122 |||||||||||||||||||| Sbjct: 27307 ccacagcccacaaagtgctc 27326
>gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide antibiotic A54145 biosynthetic gene cluster, complete sequence Length = 126933 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 534 tcgagcagatcaccgccctg 553 |||||||||||||||||||| Sbjct: 91738 tcgagcagatcaccgccctg 91757
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16 Length = 348624 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 261 atggcgccgtgctccacggcgacatcgc 288 ||||||||||||| |||||||| ||||| Sbjct: 110266 atggcgccgtgctgcacggcgaaatcgc 110239
>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14 Length = 348866 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 261 atggcgccgtgctccacggcgacatcgc 288 ||||||||||||| |||||||| ||||| Sbjct: 223259 atggcgccgtgctgcacggcgaaatcgc 223232
>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12 Length = 347071 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 261 atggcgccgtgctccacggcgacatcgc 288 ||||||||||||| |||||||| ||||| Sbjct: 206511 atggcgccgtgctgcacggcgaaatcgc 206484
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 accggccggacccggccgac 244 |||||||||||||||||||| Sbjct: 43688 accggccggacccggccgac 43707
>emb|AL591429.9| Mouse DNA sequence from clone RP23-307I20 on chromosome 11 Contains a novel gene, complete sequence Length = 149879 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 tctcatcagtctctgtggtc 66 |||||||||||||||||||| Sbjct: 106085 tctcatcagtctctgtggtc 106066
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 cccgtgtcctgctcgcggac 490 |||||||||||||||||||| Sbjct: 2471434 cccgtgtcctgctcgcggac 2471415
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 cggcgcagaaggcggtgatcctcg 344 ||||||||||| |||||||||||| Sbjct: 752066 cggcgcagaagacggtgatcctcg 752043
>gb|AY625898.1| Pseudomonas aeruginosa phage F116, complete genome Length = 65195 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 410 accatcgaccagcagtacctctcc 433 |||||||| ||||||||||||||| Sbjct: 33419 accatcgatcagcagtacctctcc 33396
>emb|AL079302.7|CNS00M8S Human chromosome 14 DNA sequence BAC R-1089B7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 204230 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 tgggcaagtccctcaccctc 535 |||||||||||||||||||| Sbjct: 76317 tgggcaagtccctcaccctc 76298 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,473,003 Number of Sequences: 3902068 Number of extensions: 3473003 Number of successful extensions: 75319 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74753 Number of HSP's gapped (non-prelim): 555 length of query: 590 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 567 effective length of database: 17,143,297,704 effective search space: 9720249798168 effective search space used: 9720249798168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
