ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart48b04 |
|---|---|
| Clone Library Name | barley_pub |
>TM9S3_MOUSE (Q9ET30) Transmembrane 9 superfamily protein member 3 precursor| Length = 587 Score = 106 bits (264), Expect = 5e-23 Identities = 49/119 (41%), Positives = 72/119 (60%), Gaps = 1/119 (0%) Frame = +2 Query: 179 ESDHKYKISEPVKLWVNKVGPYNNPQETYNYYSLPFCQPAENPAHKWXXXXXXXXXXXXI 358 E +H Y+ E V LW+N VGPY+N QETY Y+SLPFC ++ + + Sbjct: 28 EHEHTYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLGEALQGVEL 87 Query: 359 D-SQIDIQFLKNVDKGPVCTIELDAKKVQQFTDAIESSYWFELFIDDLPLWGFVGETXQ 532 + S +DI+F +V G C I+LD +K F AI++ YW++++IDDLP+WG VGE + Sbjct: 88 EFSGLDIKFKDDVMPGTYCEIDLDKEKRDAFVYAIKNHYWYQMYIDDLPIWGIVGEADE 146
>TM9S3_HUMAN (Q9HD45) Transmembrane 9 superfamily protein member 3 precursor| (SM-11044-binding protein) (EP70-P-iso) Length = 589 Score = 103 bits (258), Expect = 2e-22 Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 1/119 (0%) Frame = +2 Query: 179 ESDHKYKISEPVKLWVNKVGPYNNPQETYNYYSLPFCQPAENPAHKWXXXXXXXXXXXXI 358 E +H Y+ E V LW+N VGPY+N QETY Y+SLPFC ++ + + Sbjct: 30 EHEHTYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLGEALQGVEL 89 Query: 359 D-SQIDIQFLKNVDKGPVCTIELDAKKVQQFTDAIESSYWFELFIDDLPLWGFVGETXQ 532 + S +DI+F +V C I+LD +K F AI++ YW++++IDDLP+WG VGE + Sbjct: 90 EFSGLDIKFKDDVMPATYCEIDLDKEKRDAFVYAIKNHYWYQMYIDDLPIWGIVGEADE 148
>TM9S1_PONPY (Q5R8F1) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 103 bits (257), Expect = 3e-22 Identities = 51/109 (46%), Positives = 69/109 (63%) Frame = +2 Query: 194 YKISEPVKLWVNKVGPYNNPQETYNYYSLPFCQPAENPAHKWXXXXXXXXXXXXIDSQID 373 YK +PV L+VNKVGPY+NPQETY+YY LP C P E HK +S + Sbjct: 36 YKAGDPVILYVNKVGPYHNPQETYHYYQLPVCCP-EKIRHKSLSLGEVLDGDRMAESLYE 94 Query: 374 IQFLKNVDKGPVCTIELDAKKVQQFTDAIESSYWFELFIDDLPLWGFVG 520 I+F +NV+K +C ++L + +V+Q AIE Y+FE +DDLP+ GFVG Sbjct: 95 IRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVG 143
>TM9S1_HUMAN (O15321) Transmembrane 9 superfamily protein member 1 precursor| (hMP70) Length = 606 Score = 103 bits (257), Expect = 3e-22 Identities = 51/109 (46%), Positives = 69/109 (63%) Frame = +2 Query: 194 YKISEPVKLWVNKVGPYNNPQETYNYYSLPFCQPAENPAHKWXXXXXXXXXXXXIDSQID 373 YK +PV L+VNKVGPY+NPQETY+YY LP C P E HK +S + Sbjct: 36 YKAGDPVILYVNKVGPYHNPQETYHYYQLPVCCP-EKIRHKSLSLGEVLDGDRMAESLYE 94 Query: 374 IQFLKNVDKGPVCTIELDAKKVQQFTDAIESSYWFELFIDDLPLWGFVG 520 I+F +NV+K +C ++L + +V+Q AIE Y+FE +DDLP+ GFVG Sbjct: 95 IRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVG 143
>TM9S1_MOUSE (Q9DBU0) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 102 bits (255), Expect = 5e-22 Identities = 51/109 (46%), Positives = 69/109 (63%) Frame = +2 Query: 194 YKISEPVKLWVNKVGPYNNPQETYNYYSLPFCQPAENPAHKWXXXXXXXXXXXXIDSQID 373 YK +PV L+VNKVGPY+NPQETY+YY LP C P E HK +S + Sbjct: 36 YKPGDPVILYVNKVGPYHNPQETYHYYQLPVCCP-EKIRHKSLSLGEVLDGDRMAESLYE 94 Query: 374 IQFLKNVDKGPVCTIELDAKKVQQFTDAIESSYWFELFIDDLPLWGFVG 520 I+F +NV+K +C ++L + +V+Q AIE Y+FE +DDLP+ GFVG Sbjct: 95 IRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVG 143
>TM9S1_RAT (Q66HF2) Transmembrane 9 superfamily protein member 1 precursor| Length = 589 Score = 102 bits (255), Expect = 5e-22 Identities = 51/109 (46%), Positives = 69/109 (63%) Frame = +2 Query: 194 YKISEPVKLWVNKVGPYNNPQETYNYYSLPFCQPAENPAHKWXXXXXXXXXXXXIDSQID 373 YK +PV L+VNKVGPY+NPQETY+YY LP C P E HK +S + Sbjct: 36 YKPGDPVILYVNKVGPYHNPQETYHYYQLPVCCP-EKIRHKSLSLGEVLDGDRMAESLYE 94 Query: 374 IQFLKNVDKGPVCTIELDAKKVQQFTDAIESSYWFELFIDDLPLWGFVG 520 I+F +NV+K +C ++L + +V+Q AIE Y+FE +DDLP+ GFVG Sbjct: 95 IRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVG 143
>YCF2_MARPO (P09975) Protein ycf2| Length = 2136 Score = 32.0 bits (71), Expect = 1.1 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = -2 Query: 496 IIYEKLKPV*A-FNGISKLLNLFSIKFNCANGALVHIFQKLYINLTINQLIST 341 +I++KLK + F I K+LN FS+ FN N IF+ Y IN+ ++T Sbjct: 765 VIFDKLKKIQLNFQEIQKILNCFSLFFNSKNIKKTKIFKNSYF---INENLTT 814
>TM9S4_HUMAN (Q92544) Transmembrane 9 superfamily protein member 4| Length = 625 Score = 31.2 bits (69), Expect = 1.9 Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 5/106 (4%) Frame = +2 Query: 203 SEPVKLWVNKVGPYNNPQETYNYYSLPFCQPAENPAHKWXXXXXXXXXXXXIDSQIDIQF 382 ++PV++ K+ + Q Y YYSLPFCQP++ +K +++ + Sbjct: 20 NDPVEIKAVKLTS-SRTQLPYEYYSLPFCQPSK-ITYKAENLGEVLRGDRIVNTPFQVLM 77 Query: 383 LKNVDKGPVCT-----IELDAKKVQQFTDAIESSYWFELFIDDLPL 505 +C+ + L ++ + + I Y+ L D+LP+ Sbjct: 78 NSEKKCEVLCSQSNKPVTLTVEQSRLVAERITEDYYVHLIADNLPV 123
>ENGA_STAAW (P64061) GTP-binding protein engA| Length = 436 Score = 31.2 bits (69), Expect = 1.9 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +2 Query: 194 YKISEPVKLWVNKVGPYNNPQETYNYYSLPFCQP 295 YK +PV L VNKV + Y++YSL F +P Sbjct: 108 YKSKKPVVLAVNKVDNMEMRTDVYDFYSLGFGEP 141
>ENGA_STAAS (Q6G988) GTP-binding protein engA| Length = 436 Score = 31.2 bits (69), Expect = 1.9 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +2 Query: 194 YKISEPVKLWVNKVGPYNNPQETYNYYSLPFCQP 295 YK +PV L VNKV + Y++YSL F +P Sbjct: 108 YKSKKPVVLAVNKVDNMEMRTDVYDFYSLGFGEP 141
>ENGA_STAAR (Q6GGT6) GTP-binding protein engA| Length = 436 Score = 31.2 bits (69), Expect = 1.9 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +2 Query: 194 YKISEPVKLWVNKVGPYNNPQETYNYYSLPFCQP 295 YK +PV L VNKV + Y++YSL F +P Sbjct: 108 YKSKKPVVLAVNKVDNMEMRTDVYDFYSLGFGEP 141
>ENGA_STAAN (P64060) GTP-binding protein engA| Length = 436 Score = 31.2 bits (69), Expect = 1.9 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +2 Query: 194 YKISEPVKLWVNKVGPYNNPQETYNYYSLPFCQP 295 YK +PV L VNKV + Y++YSL F +P Sbjct: 108 YKSKKPVVLAVNKVDNMEMRTDVYDFYSLGFGEP 141
>ENGA_STAAM (P64059) GTP-binding protein engA| Length = 436 Score = 31.2 bits (69), Expect = 1.9 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +2 Query: 194 YKISEPVKLWVNKVGPYNNPQETYNYYSLPFCQP 295 YK +PV L VNKV + Y++YSL F +P Sbjct: 108 YKSKKPVVLAVNKVDNMEMRTDVYDFYSLGFGEP 141
>ENGA_STAAC (Q5HFU8) GTP-binding protein engA| Length = 436 Score = 31.2 bits (69), Expect = 1.9 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +2 Query: 194 YKISEPVKLWVNKVGPYNNPQETYNYYSLPFCQP 295 YK +PV L VNKV + Y++YSL F +P Sbjct: 108 YKSKKPVVLAVNKVDNMEMRTDVYDFYSLGFGEP 141
>ENGA_STAES (Q8CP62) GTP-binding protein engA| Length = 436 Score = 30.4 bits (67), Expect = 3.2 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = +2 Query: 194 YKISEPVKLWVNKVGPYNNPQETYNYYSLPFCQP 295 YK +PV L VNKV + Y++YSL F P Sbjct: 108 YKSKKPVVLAVNKVDNLEMRNDIYDFYSLGFGDP 141
>ENGA_STAEQ (Q5HP70) GTP-binding protein engA| Length = 436 Score = 30.4 bits (67), Expect = 3.2 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = +2 Query: 194 YKISEPVKLWVNKVGPYNNPQETYNYYSLPFCQP 295 YK +PV L VNKV + Y++YSL F P Sbjct: 108 YKSKKPVVLAVNKVDNLEMRNDIYDFYSLGFGDP 141
>ENGA_LACPL (Q88VZ6) GTP-binding protein engA| Length = 436 Score = 30.4 bits (67), Expect = 3.2 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +2 Query: 194 YKISEPVKLWVNKVGPYNNPQETYNYYSLPFCQP 295 Y+ ++PV L VNKV E Y++YSL F P Sbjct: 108 YRSNKPVVLGVNKVDNPELRSEVYDFYSLGFGDP 141
>RPOC2_ARATH (P56764) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1376 Score = 30.0 bits (66), Expect = 4.2 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%) Frame = -2 Query: 385 QKLYINLTINQLIS--TQNLSKSTPFMCRVFSWLTKRKAVIVVCFLRIIVRANLV 227 Q L I L +N+LI+ TQ++S TPF CR SW+ + +C+ R +LV Sbjct: 267 QDLGIGL-VNRLITFGTQSISIRTPFTCRSTSWICR------LCYGRSPTHGDLV 314
>MATN3_HUMAN (O15232) Matrilin-3 precursor| Length = 486 Score = 29.6 bits (65), Expect = 5.5 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = -1 Query: 338 EPLQVHPIYVQGFQLVDKTEGCNSCMFPEDYCTGQPCL 225 EPL+ H YV+ + +++K S F E +C PC+ Sbjct: 236 EPLEEHVFYVETYGVIEKL----SSRFQETFCALDPCV 269
>ENGA_OCEIH (Q8EQA8) GTP-binding protein engA| Length = 436 Score = 29.3 bits (64), Expect = 7.2 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +2 Query: 194 YKISEPVKLWVNKVGPYNNPQETYNYYSLPFCQP 295 +K ++PV + VNK+ + Y YYSL F QP Sbjct: 108 FKSNKPVVVGVNKMDNPQMHETIYEYYSLGFGQP 141
>ENGA_LISMO (Q8Y5W8) GTP-binding protein engA| Length = 436 Score = 28.9 bits (63), Expect = 9.3 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = +2 Query: 194 YKISEPVKLWVNKVGPYNNPQETYNYYSLPFCQP 295 Y+ ++P+ L +NKV + Y++YSL F +P Sbjct: 108 YRSNKPIVLAINKVDNPEMRDQIYDFYSLGFGEP 141
>ENGA_LISMF (Q71Y78) GTP-binding protein engA| Length = 436 Score = 28.9 bits (63), Expect = 9.3 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = +2 Query: 194 YKISEPVKLWVNKVGPYNNPQETYNYYSLPFCQP 295 Y+ ++P+ L +NKV + Y++YSL F +P Sbjct: 108 YRSNKPIVLAINKVDNPEMRDQIYDFYSLGFGEP 141
>ENGA_LISIN (Q92A71) GTP-binding protein engA| Length = 436 Score = 28.9 bits (63), Expect = 9.3 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = +2 Query: 194 YKISEPVKLWVNKVGPYNNPQETYNYYSLPFCQP 295 Y+ ++P+ L +NKV + Y++YSL F +P Sbjct: 108 YRSNKPIVLAINKVDNPEMRDQIYDFYSLGFGEP 141 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,147,462 Number of Sequences: 219361 Number of extensions: 985046 Number of successful extensions: 2804 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2738 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2798 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4142954952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
