ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart48a07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 109 bits (55), Expect = 1e-20 Identities = 103/119 (86%) Strand = Plus / Minus Query: 412 cccaccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacc 471 ||||||||||||| |||||||| ||| ||||||| | || ||| |||||||||||||||| Sbjct: 1842400 cccaccagctcgttcctttccttgagacccaggtgttcatcaaagaccggatccctgacc 1842341 Query: 472 tgagctcgctccccgcgccgcggctcttcgccacgcacatcccggccgagtcgctgccg 530 ||||||| ||||| |||||||||||||| |||||||||||| || ||||| ||||| Sbjct: 1842340 tgagctccctcccggcgccgcggctcttgatgacgcacatcccgtcccagtcgttgccg 1842282 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 414 caccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacctg 473 |||||||||||||||||||||||| ||||||| | | ||| |||||||||||||||||| Sbjct: 1830668 caccagctcgtccctttcctcgagtcccaggtgttcgtcaatgaccggatccctgacctg 1830609 Query: 474 agctc 478 ||||| Sbjct: 1830608 agctc 1830604 Score = 69.9 bits (35), Expect = 9e-09 Identities = 104/127 (81%) Strand = Plus / Minus Query: 456 gaccggatccctgacctgagctcgctccccgcgccgcggctcttcgccacgcacatcccg 515 ||||| ||||| || |||||||||||||| | || ||||||| | |||||||||||| Sbjct: 1822057 gaccgcatccccgatctgagctcgctcccggaaccaaggctcttgacgacgcacatcccg 1821998 Query: 516 gccgagtcgctgccgccctccatcgcggcgtcagactgcaaggtggtgtacttgtgccgg 575 ||| | ||||||||| |||||| || || || | | |||||||||||||| |||||||| Sbjct: 1821997 gcccaatcgctgccggactccattgccgcctccggcagcaaggtggtgtacctgtgccgg 1821938 Query: 576 gacccca 582 || |||| Sbjct: 1821937 gatccca 1821931 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 533 ctccatcgcggcgtcagactgcaaggtggtgtacttgtgccgggacccca 582 |||| |||| || |||| |||||||||||||||| |||||||||| |||| Sbjct: 1837550 ctccgtcgcagcctcaggctgcaaggtggtgtacctgtgccgggatccca 1837501 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 199 gccgccaccccgacggctggtacat 223 ||||||||||||||||||||||||| Sbjct: 1837860 gccgccaccccgacggctggtacat 1837836 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 413 ccaccagctcgtccctttcctcgag 437 ||||||||||||||||||||||||| Sbjct: 1834315 ccaccagctcgtccctttcctcgag 1834291 Score = 46.1 bits (23), Expect = 0.13 Identities = 48/55 (87%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 555 aaggtggtgtacttgtgccgggacccc-aggactgcttcgtgtctctgtggcact 608 |||||||||||| | || ||||||||| ||||||||||||| || || ||||||| Sbjct: 1830527 aaggtggtgtacctttgtcgggaccccaaggactgcttcgtctcgctctggcact 1830473
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 109 bits (55), Expect = 1e-20 Identities = 103/119 (86%) Strand = Plus / Minus Query: 412 cccaccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacc 471 ||||||||||||| |||||||| ||| ||||||| | || ||| |||||||||||||||| Sbjct: 1842378 cccaccagctcgttcctttccttgagacccaggtgttcatcaaagaccggatccctgacc 1842319 Query: 472 tgagctcgctccccgcgccgcggctcttcgccacgcacatcccggccgagtcgctgccg 530 ||||||| ||||| |||||||||||||| |||||||||||| || ||||| ||||| Sbjct: 1842318 tgagctccctcccggcgccgcggctcttgatgacgcacatcccgtcccagtcgttgccg 1842260 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 414 caccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacctg 473 |||||||||||||||||||||||| ||||||| | | ||| |||||||||||||||||| Sbjct: 1830646 caccagctcgtccctttcctcgagtcccaggtgttcgtcaatgaccggatccctgacctg 1830587 Query: 474 agctc 478 ||||| Sbjct: 1830586 agctc 1830582 Score = 69.9 bits (35), Expect = 9e-09 Identities = 104/127 (81%) Strand = Plus / Minus Query: 456 gaccggatccctgacctgagctcgctccccgcgccgcggctcttcgccacgcacatcccg 515 ||||| ||||| || |||||||||||||| | || ||||||| | |||||||||||| Sbjct: 1822035 gaccgcatccccgatctgagctcgctcccggaaccaaggctcttgacgacgcacatcccg 1821976 Query: 516 gccgagtcgctgccgccctccatcgcggcgtcagactgcaaggtggtgtacttgtgccgg 575 ||| | ||||||||| |||||| || || || | | |||||||||||||| |||||||| Sbjct: 1821975 gcccaatcgctgccggactccattgccgcctccggcagcaaggtggtgtacctgtgccgg 1821916 Query: 576 gacccca 582 || |||| Sbjct: 1821915 gatccca 1821909 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 533 ctccatcgcggcgtcagactgcaaggtggtgtacttgtgccgggacccca 582 |||| |||| || |||| |||||||||||||||| |||||||||| |||| Sbjct: 1837528 ctccgtcgcagcctcaggctgcaaggtggtgtacctgtgccgggatccca 1837479 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 199 gccgccaccccgacggctggtacat 223 ||||||||||||||||||||||||| Sbjct: 1837838 gccgccaccccgacggctggtacat 1837814 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 413 ccaccagctcgtccctttcctcgag 437 ||||||||||||||||||||||||| Sbjct: 1834293 ccaccagctcgtccctttcctcgag 1834269 Score = 46.1 bits (23), Expect = 0.13 Identities = 48/55 (87%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 555 aaggtggtgtacttgtgccgggacccc-aggactgcttcgtgtctctgtggcact 608 |||||||||||| | || ||||||||| ||||||||||||| || || ||||||| Sbjct: 1830505 aaggtggtgtacctttgtcgggaccccaaggactgcttcgtctcgctctggcact 1830451
>emb|AL935154.2|CNS08CCP Oryza sativa chromosome 12, . BAC OSJNBb0109O08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128619 Score = 109 bits (55), Expect = 1e-20 Identities = 103/119 (86%) Strand = Plus / Minus Query: 412 cccaccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacc 471 ||||||||||||| |||||||| ||| ||||||| | || ||| |||||||||||||||| Sbjct: 37118 cccaccagctcgttcctttccttgagacccaggtgttcatcaaagaccggatccctgacc 37059 Query: 472 tgagctcgctccccgcgccgcggctcttcgccacgcacatcccggccgagtcgctgccg 530 ||||||| ||||| |||||||||||||| |||||||||||| || ||||| ||||| Sbjct: 37058 tgagctccctcccggcgccgcggctcttgatgacgcacatcccgtcccagtcgttgccg 37000 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 414 caccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacctg 473 |||||||||||||||||||||||| ||||||| | | ||| |||||||||||||||||| Sbjct: 25386 caccagctcgtccctttcctcgagtcccaggtgttcgtcaatgaccggatccctgacctg 25327 Query: 474 agctc 478 ||||| Sbjct: 25326 agctc 25322 Score = 69.9 bits (35), Expect = 9e-09 Identities = 104/127 (81%) Strand = Plus / Minus Query: 456 gaccggatccctgacctgagctcgctccccgcgccgcggctcttcgccacgcacatcccg 515 ||||| ||||| || |||||||||||||| | || ||||||| | |||||||||||| Sbjct: 16775 gaccgcatccccgatctgagctcgctcccggaaccaaggctcttgacgacgcacatcccg 16716 Query: 516 gccgagtcgctgccgccctccatcgcggcgtcagactgcaaggtggtgtacttgtgccgg 575 ||| | ||||||||| |||||| || || || | | |||||||||||||| |||||||| Sbjct: 16715 gcccaatcgctgccggactccattgccgcctccggcagcaaggtggtgtacctgtgccgg 16656 Query: 576 gacccca 582 || |||| Sbjct: 16655 gatccca 16649 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 533 ctccatcgcggcgtcagactgcaaggtggtgtacttgtgccgggacccca 582 |||| |||| || |||| |||||||||||||||| |||||||||| |||| Sbjct: 32268 ctccgtcgcagcctcaggctgcaaggtggtgtacctgtgccgggatccca 32219 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 199 gccgccaccccgacggctggtacat 223 ||||||||||||||||||||||||| Sbjct: 32578 gccgccaccccgacggctggtacat 32554 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 413 ccaccagctcgtccctttcctcgag 437 ||||||||||||||||||||||||| Sbjct: 29033 ccaccagctcgtccctttcctcgag 29009 Score = 46.1 bits (23), Expect = 0.13 Identities = 48/55 (87%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 555 aaggtggtgtacttgtgccgggacccc-aggactgcttcgtgtctctgtggcact 608 |||||||||||| | || ||||||||| ||||||||||||| || || ||||||| Sbjct: 25245 aaggtggtgtacctttgtcgggaccccaaggactgcttcgtctcgctctggcact 25191
>gb|AC151480.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAa0068G15, complete sequence Length = 130161 Score = 93.7 bits (47), Expect = 6e-16 Identities = 101/119 (84%) Strand = Plus / Minus Query: 412 cccaccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacc 471 ||||||||||||| |||||||| ||| ||||||| | || ||| || ||||||||||||| Sbjct: 46083 cccaccagctcgttcctttccttgagacccaggtgttcatcaaagatcggatccctgacc 46024 Query: 472 tgagctcgctccccgcgccgcggctcttcgccacgcacatcccggccgagtcgctgccg 530 ||||||| ||||| ||||||||||| || |||||||||||| || ||||| ||||| Sbjct: 46023 tgagctccctcccggcgccgcggctgttgatgacgcacatcccgtcccagtcgttgccg 45965 Score = 89.7 bits (45), Expect = 1e-14 Identities = 60/65 (92%) Strand = Plus / Minus Query: 414 caccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacctg 473 |||||||||||||||||||||||| ||||||| | | |||| |||||||||||||||||| Sbjct: 26594 caccagctcgtccctttcctcgagtcccaggtgttcgccaatgaccggatccctgacctg 26535 Query: 474 agctc 478 ||||| Sbjct: 26534 agctc 26530 Score = 61.9 bits (31), Expect = 2e-06 Identities = 104/127 (81%), Gaps = 1/127 (0%) Strand = Plus / Minus Query: 456 gaccggatccctgacctgagctcgctccccgcgccgcggctcttcgccacgcacatcccg 515 ||||| ||||| || |||||||||||||| | || ||||||| | |||||||||||| Sbjct: 24421 gaccgcatccccgatctgagctcgctcccggaaccaaggctcttgacgacgcacatcccg 24362 Query: 516 gccgagtcgctgccgccctccatcgcggcgtcagactgcaaggtggtgtacttgtgccgg 575 ||| | ||||||||| |||||| || || || | | |||||||||||||| |||||||| Sbjct: 24361 gccaa-tcgctgccggactccattgccgcctccggcagcaaggtggtgtacctgtgccgg 24303 Query: 576 gacccca 582 || |||| Sbjct: 24302 gatccca 24296 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 551 ctgcaaggtggtgtacttgtgccgggaccccaggactgcttcgtgtctctgtggcact 608 |||||||||||||||| |||||||||| ||| ||| |||||||| || || ||||||| Sbjct: 42528 ctgcaaggtggtgtacctgtgccgggatccctggattgcttcgtctcgctttggcact 42471 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 203 ccaccccgacggctggtacat 223 ||||||||||||||||||||| Sbjct: 42852 ccaccccgacggctggtacat 42832
>gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence Length = 146175 Score = 93.7 bits (47), Expect = 6e-16 Identities = 101/119 (84%) Strand = Plus / Minus Query: 412 cccaccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacc 471 ||||||||||||| |||||||| ||| ||||||| | || ||| || ||||||||||||| Sbjct: 132257 cccaccagctcgttcctttccttgagacccaggtgttcatcaaagatcggatccctgacc 132198 Query: 472 tgagctcgctccccgcgccgcggctcttcgccacgcacatcccggccgagtcgctgccg 530 ||||||| ||||| ||||||||||| || |||||||||||| || ||||| ||||| Sbjct: 132197 tgagctccctcccggcgccgcggctgttgatgacgcacatcccgtcccagtcgttgccg 132139 Score = 89.7 bits (45), Expect = 1e-14 Identities = 60/65 (92%) Strand = Plus / Minus Query: 414 caccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacctg 473 |||||||||||||||||||||||| ||||||| | | |||| |||||||||||||||||| Sbjct: 112768 caccagctcgtccctttcctcgagtcccaggtgttcgccaatgaccggatccctgacctg 112709 Query: 474 agctc 478 ||||| Sbjct: 112708 agctc 112704 Score = 61.9 bits (31), Expect = 2e-06 Identities = 104/127 (81%), Gaps = 1/127 (0%) Strand = Plus / Minus Query: 456 gaccggatccctgacctgagctcgctccccgcgccgcggctcttcgccacgcacatcccg 515 ||||| ||||| || |||||||||||||| | || ||||||| | |||||||||||| Sbjct: 110595 gaccgcatccccgatctgagctcgctcccggaaccaaggctcttgacgacgcacatcccg 110536 Query: 516 gccgagtcgctgccgccctccatcgcggcgtcagactgcaaggtggtgtacttgtgccgg 575 ||| | ||||||||| |||||| || || || | | |||||||||||||| |||||||| Sbjct: 110535 gccaa-tcgctgccggactccattgccgcctccggcagcaaggtggtgtacctgtgccgg 110477 Query: 576 gacccca 582 || |||| Sbjct: 110476 gatccca 110470 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 551 ctgcaaggtggtgtacttgtgccgggaccccaggactgcttcgtgtctctgtggcact 608 |||||||||||||||| |||||||||| ||| ||| |||||||| || || ||||||| Sbjct: 128702 ctgcaaggtggtgtacctgtgccgggatccctggattgcttcgtctcgctttggcact 128645 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 203 ccaccccgacggctggtacat 223 ||||||||||||||||||||| Sbjct: 129026 ccaccccgacggctggtacat 129006
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 93.7 bits (47), Expect = 6e-16 Identities = 101/119 (84%) Strand = Plus / Minus Query: 412 cccaccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacc 471 ||||||||||||| |||||||| ||| ||||||| | || ||| || ||||||||||||| Sbjct: 1914427 cccaccagctcgttcctttccttgagacccaggtgttcatcaaagatcggatccctgacc 1914368 Query: 472 tgagctcgctccccgcgccgcggctcttcgccacgcacatcccggccgagtcgctgccg 530 ||||||| ||||| ||||||||||| || |||||||||||| || ||||| ||||| Sbjct: 1914367 tgagctccctcccggcgccgcggctgttgatgacgcacatcccgtcccagtcgttgccg 1914309 Score = 89.7 bits (45), Expect = 1e-14 Identities = 60/65 (92%) Strand = Plus / Minus Query: 414 caccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacctg 473 |||||||||||||||||||||||| ||||||| | | |||| |||||||||||||||||| Sbjct: 1894938 caccagctcgtccctttcctcgagtcccaggtgttcgccaatgaccggatccctgacctg 1894879 Query: 474 agctc 478 ||||| Sbjct: 1894878 agctc 1894874 Score = 61.9 bits (31), Expect = 2e-06 Identities = 104/127 (81%), Gaps = 1/127 (0%) Strand = Plus / Minus Query: 456 gaccggatccctgacctgagctcgctccccgcgccgcggctcttcgccacgcacatcccg 515 ||||| ||||| || |||||||||||||| | || ||||||| | |||||||||||| Sbjct: 1892765 gaccgcatccccgatctgagctcgctcccggaaccaaggctcttgacgacgcacatcccg 1892706 Query: 516 gccgagtcgctgccgccctccatcgcggcgtcagactgcaaggtggtgtacttgtgccgg 575 ||| | ||||||||| |||||| || || || | | |||||||||||||| |||||||| Sbjct: 1892705 gccaa-tcgctgccggactccattgccgcctccggcagcaaggtggtgtacctgtgccgg 1892647 Query: 576 gacccca 582 || |||| Sbjct: 1892646 gatccca 1892640 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 551 ctgcaaggtggtgtacttgtgccgggaccccaggactgcttcgtgtctctgtggcact 608 |||||||||||||||| |||||||||| ||| ||| |||||||| || || ||||||| Sbjct: 1910872 ctgcaaggtggtgtacctgtgccgggatccctggattgcttcgtctcgctttggcact 1910815 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 203 ccaccccgacggctggtacat 223 ||||||||||||||||||||| Sbjct: 1911196 ccaccccgacggctggtacat 1911176
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 93.7 bits (47), Expect = 6e-16 Identities = 101/119 (84%) Strand = Plus / Minus Query: 412 cccaccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacc 471 ||||||||||||| |||||||| ||| ||||||| | || ||| || ||||||||||||| Sbjct: 1912148 cccaccagctcgttcctttccttgagacccaggtgttcatcaaagatcggatccctgacc 1912089 Query: 472 tgagctcgctccccgcgccgcggctcttcgccacgcacatcccggccgagtcgctgccg 530 ||||||| ||||| ||||||||||| || |||||||||||| || ||||| ||||| Sbjct: 1912088 tgagctccctcccggcgccgcggctgttgatgacgcacatcccgtcccagtcgttgccg 1912030 Score = 89.7 bits (45), Expect = 1e-14 Identities = 60/65 (92%) Strand = Plus / Minus Query: 414 caccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacctg 473 |||||||||||||||||||||||| ||||||| | | |||| |||||||||||||||||| Sbjct: 1892659 caccagctcgtccctttcctcgagtcccaggtgttcgccaatgaccggatccctgacctg 1892600 Query: 474 agctc 478 ||||| Sbjct: 1892599 agctc 1892595 Score = 61.9 bits (31), Expect = 2e-06 Identities = 104/127 (81%), Gaps = 1/127 (0%) Strand = Plus / Minus Query: 456 gaccggatccctgacctgagctcgctccccgcgccgcggctcttcgccacgcacatcccg 515 ||||| ||||| || |||||||||||||| | || ||||||| | |||||||||||| Sbjct: 1890486 gaccgcatccccgatctgagctcgctcccggaaccaaggctcttgacgacgcacatcccg 1890427 Query: 516 gccgagtcgctgccgccctccatcgcggcgtcagactgcaaggtggtgtacttgtgccgg 575 ||| | ||||||||| |||||| || || || | | |||||||||||||| |||||||| Sbjct: 1890426 gccaa-tcgctgccggactccattgccgcctccggcagcaaggtggtgtacctgtgccgg 1890368 Query: 576 gacccca 582 || |||| Sbjct: 1890367 gatccca 1890361 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 551 ctgcaaggtggtgtacttgtgccgggaccccaggactgcttcgtgtctctgtggcact 608 |||||||||||||||| |||||||||| ||| ||| |||||||| || || ||||||| Sbjct: 1908593 ctgcaaggtggtgtacctgtgccgggatccctggattgcttcgtctcgctttggcact 1908536 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 203 ccaccccgacggctggtacat 223 ||||||||||||||||||||| Sbjct: 1908917 ccaccccgacggctggtacat 1908897
>ref|NM_183698.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1041 Score = 91.7 bits (46), Expect = 3e-15 Identities = 119/142 (83%), Gaps = 1/142 (0%) Strand = Plus / Plus Query: 468 gacctgagctcgctccccgcgccgcggctcttcgccacgcacatcccggccgagtcgctg 527 ||||||||||| ||||| ||||| |||||| |||| |||||||||||| | ||| ||| Sbjct: 412 gacctgagctccctcccggcgccacggctcctcgcgacgcacatcccgcgcccgtccctg 471 Query: 528 ccgccctccatcgcggcgtcagactgcaaggtggtgtacttgtgccgggacccc-aggac 586 ||| ||||| |||| || | |||||||||||||||| ||||||| |||||| ||||| Sbjct: 472 ccggcctccgtcgccatctccggctgcaaggtggtgtacatgtgccgcgaccccaaggac 531 Query: 587 tgcttcgtgtctctgtggcact 608 ||| ||||||| |||||||||| Sbjct: 532 tgcctcgtgtcgctgtggcact 553 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 200 ccgccaccccgacggctggtaca 222 ||||||||||||||||||||||| Sbjct: 132 ccgccaccccgacggctggtaca 154 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 414 caccagctcgtccctttcctcgag 437 |||||||||||||| ||||||||| Sbjct: 358 caccagctcgtcccgttcctcgag 381
>emb|AJ698082.1| Oryza sativa (japonica cultivar-group) mRNA for steroid sulfotransferase (ss1 gene) Length = 1096 Score = 91.7 bits (46), Expect = 3e-15 Identities = 119/142 (83%), Gaps = 1/142 (0%) Strand = Plus / Plus Query: 468 gacctgagctcgctccccgcgccgcggctcttcgccacgcacatcccggccgagtcgctg 527 ||||||||||| ||||| ||||| |||||| |||| |||||||||||| | ||| ||| Sbjct: 425 gacctgagctccctcccggcgccacggctcctcgcgacgcacatcccgcgcccgtccctg 484 Query: 528 ccgccctccatcgcggcgtcagactgcaaggtggtgtacttgtgccgggacccc-aggac 586 ||| ||||| |||| || | |||||||||||||||| ||||||| |||||| ||||| Sbjct: 485 ccggcctccgtcgccatctccggctgcaaggtggtgtacatgtgccgcgaccccaaggac 544 Query: 587 tgcttcgtgtctctgtggcact 608 ||| ||||||| |||||||||| Sbjct: 545 tgcctcgtgtcgctgtggcact 566 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 200 ccgccaccccgacggctggtaca 222 ||||||||||||||||||||||| Sbjct: 145 ccgccaccccgacggctggtaca 167 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 414 caccagctcgtccctttcctcgag 437 |||||||||||||| ||||||||| Sbjct: 371 caccagctcgtcccgttcctcgag 394
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 91.7 bits (46), Expect = 3e-15 Identities = 119/142 (83%), Gaps = 1/142 (0%) Strand = Plus / Minus Query: 468 gacctgagctcgctccccgcgccgcggctcttcgccacgcacatcccggccgagtcgctg 527 ||||||||||| ||||| ||||| |||||| |||| |||||||||||| | ||| ||| Sbjct: 11687049 gacctgagctccctcccggcgccacggctcctcgcgacgcacatcccgcgcccgtccctg 11686990 Query: 528 ccgccctccatcgcggcgtcagactgcaaggtggtgtacttgtgccgggacccc-aggac 586 ||| ||||| |||| || | |||||||||||||||| ||||||| |||||| ||||| Sbjct: 11686989 ccggcctccgtcgccatctccggctgcaaggtggtgtacatgtgccgcgaccccaaggac 11686930 Query: 587 tgcttcgtgtctctgtggcact 608 ||| ||||||| |||||||||| Sbjct: 11686929 tgcctcgtgtcgctgtggcact 11686908 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 200 ccgccaccccgacggctggtaca 222 ||||||||||||||||||||||| Sbjct: 11687329 ccgccaccccgacggctggtaca 11687307 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 414 caccagctcgtccctttcctcgag 437 |||||||||||||| ||||||||| Sbjct: 11687103 caccagctcgtcccgttcctcgag 11687080
>dbj|AP003934.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0551A11 Length = 132384 Score = 91.7 bits (46), Expect = 3e-15 Identities = 119/142 (83%), Gaps = 1/142 (0%) Strand = Plus / Minus Query: 468 gacctgagctcgctccccgcgccgcggctcttcgccacgcacatcccggccgagtcgctg 527 ||||||||||| ||||| ||||| |||||| |||| |||||||||||| | ||| ||| Sbjct: 126173 gacctgagctccctcccggcgccacggctcctcgcgacgcacatcccgcgcccgtccctg 126114 Query: 528 ccgccctccatcgcggcgtcagactgcaaggtggtgtacttgtgccgggacccc-aggac 586 ||| ||||| |||| || | |||||||||||||||| ||||||| |||||| ||||| Sbjct: 126113 ccggcctccgtcgccatctccggctgcaaggtggtgtacatgtgccgcgaccccaaggac 126054 Query: 587 tgcttcgtgtctctgtggcact 608 ||| ||||||| |||||||||| Sbjct: 126053 tgcctcgtgtcgctgtggcact 126032 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 200 ccgccaccccgacggctggtaca 222 ||||||||||||||||||||||| Sbjct: 126453 ccgccaccccgacggctggtaca 126431 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 414 caccagctcgtccctttcctcgag 437 |||||||||||||| ||||||||| Sbjct: 126227 caccagctcgtcccgttcctcgag 126204
>dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1011A07 Length = 150590 Score = 91.7 bits (46), Expect = 3e-15 Identities = 119/142 (83%), Gaps = 1/142 (0%) Strand = Plus / Minus Query: 468 gacctgagctcgctccccgcgccgcggctcttcgccacgcacatcccggccgagtcgctg 527 ||||||||||| ||||| ||||| |||||| |||| |||||||||||| | ||| ||| Sbjct: 26217 gacctgagctccctcccggcgccacggctcctcgcgacgcacatcccgcgcccgtccctg 26158 Query: 528 ccgccctccatcgcggcgtcagactgcaaggtggtgtacttgtgccgggacccc-aggac 586 ||| ||||| |||| || | |||||||||||||||| ||||||| |||||| ||||| Sbjct: 26157 ccggcctccgtcgccatctccggctgcaaggtggtgtacatgtgccgcgaccccaaggac 26098 Query: 587 tgcttcgtgtctctgtggcact 608 ||| ||||||| |||||||||| Sbjct: 26097 tgcctcgtgtcgctgtggcact 26076 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 200 ccgccaccccgacggctggtaca 222 ||||||||||||||||||||||| Sbjct: 26497 ccgccaccccgacggctggtaca 26475 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 414 caccagctcgtccctttcctcgag 437 |||||||||||||| ||||||||| Sbjct: 26271 caccagctcgtcccgttcctcgag 26248
>dbj|AK105552.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-A12, full insert sequence Length = 1407 Score = 83.8 bits (42), Expect = 6e-13 Identities = 118/142 (83%), Gaps = 1/142 (0%) Strand = Plus / Plus Query: 468 gacctgagctcgctccccgcgccgcggctcttcgccacgcacatcccggccgagtcgctg 527 ||||||||||| ||||| ||||| |||||| |||| |||||||||||| | ||| ||| Sbjct: 484 gacctgagctccctcccggcgccacggctcctcgcgacgcacatcccgcgcccgtccctg 543 Query: 528 ccgccctccatcgcggcgtcagactgcaaggtggtgtacttgtgccgggacccc-aggac 586 ||| ||||| |||| || | |||||||||||||||| ||||||| |||||| ||||| Sbjct: 544 ccggcctccgtcgccatctccggctgcaaggtggtgtacatgtgccgcgaccccaaggac 603 Query: 587 tgcttcgtgtctctgtggcact 608 ||| |||||| |||||||||| Sbjct: 604 tgccccgtgtcgctgtggcact 625 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 200 ccgccaccccgacggctggtaca 222 ||||||||||||||||||||||| Sbjct: 204 ccgccaccccgacggctggtaca 226 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 414 caccagctcgtccctttcctcgag 437 |||||||||||||| ||||||||| Sbjct: 430 caccagctcgtcccgttcctcgag 453
>emb|BX000502.2|CNS08CDS Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132026 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 414 caccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacctg 473 |||||||||||||||||||||||| ||||||| | | ||| |||||||||||||||||| Sbjct: 9814 caccagctcgtccctttcctcgagtcccaggtgttcgtcaatgaccggatccctgacctg 9873 Query: 474 agctc 478 ||||| Sbjct: 9874 agctc 9878 Score = 69.9 bits (35), Expect = 9e-09 Identities = 104/127 (81%) Strand = Plus / Plus Query: 456 gaccggatccctgacctgagctcgctccccgcgccgcggctcttcgccacgcacatcccg 515 ||||| ||||| || |||||||||||||| | || ||||||| | |||||||||||| Sbjct: 18425 gaccgcatccccgatctgagctcgctcccggaaccaaggctcttgacgacgcacatcccg 18484 Query: 516 gccgagtcgctgccgccctccatcgcggcgtcagactgcaaggtggtgtacttgtgccgg 575 ||| | ||||||||| |||||| || || || | | |||||||||||||| |||||||| Sbjct: 18485 gcccaatcgctgccggactccattgccgcctccggcagcaaggtggtgtacctgtgccgg 18544 Query: 576 gacccca 582 || |||| Sbjct: 18545 gatccca 18551 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 533 ctccatcgcggcgtcagactgcaaggtggtgtacttgtgccgggacccca 582 |||| |||| || |||| |||||||||||||||| |||||||||| |||| Sbjct: 2932 ctccgtcgcagcctcaggctgcaaggtggtgtacctgtgccgggatccca 2981 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Plus Query: 413 ccaccagctcgtccctttcctcgag 437 ||||||||||||||||||||||||| Sbjct: 6167 ccaccagctcgtccctttcctcgag 6191 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Plus Query: 199 gccgccaccccgacggctggtacat 223 ||||||||||||||||||||||||| Sbjct: 2622 gccgccaccccgacggctggtacat 2646 Score = 46.1 bits (23), Expect = 0.13 Identities = 48/55 (87%), Gaps = 1/55 (1%) Strand = Plus / Plus Query: 555 aaggtggtgtacttgtgccgggacccc-aggactgcttcgtgtctctgtggcact 608 |||||||||||| | || ||||||||| ||||||||||||| || || ||||||| Sbjct: 9955 aaggtggtgtacctttgtcgggaccccaaggactgcttcgtctcgctctggcact 10009
>gb|AC110508.8| Mus musculus chromosome 3, clone RP23-382L1, complete sequence Length = 224790 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 572 ccgggaccccaggactgcttc 592 ||||||||||||||||||||| Sbjct: 28311 ccgggaccccaggactgcttc 28331
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 478 cgctccccgcgccgcggctcttcgc 502 |||| |||||||||||||||||||| Sbjct: 649982 cgctgcccgcgccgcggctcttcgc 649958
>gb|AE012238.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 146 of 460 of the complete genome Length = 11884 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 243 ggctccgtggtcgcgcagcagcgct 267 |||||||||| |||||||||||||| Sbjct: 6727 ggctccgtggccgcgcagcagcgct 6751
>gb|AE009921.1|AE009921 Pyrobaculum aerophilum strain IM2 section 176 of 201 of the complete genome Length = 10311 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 398 cgcctcccacaactcccacca 418 ||||||||||||||||||||| Sbjct: 8839 cgcctcccacaactcccacca 8819
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 243 ggctccgtggtcgcgcagcagcgct 267 |||||||||| |||||||||||||| Sbjct: 3426134 ggctccgtggccgcgcagcagcgct 3426110
>emb|AL627074.11| Mouse DNA sequence from clone RP23-465A17 on chromosome 3, complete sequence Length = 177133 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 572 ccgggaccccaggactgcttc 592 ||||||||||||||||||||| Sbjct: 165782 ccgggaccccaggactgcttc 165802
>ref|XM_473241.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1041 Score = 40.1 bits (20), Expect = 8.3 Identities = 35/40 (87%) Strand = Plus / Plus Query: 304 tgcccaagtgcgggactacctggatcaaggccctcctcta 343 ||||||||| ||| || || ||||||||||| |||||||| Sbjct: 245 tgcccaagtccggcacgacgtggatcaaggcgctcctcta 284
>ref|XM_605779.2| PREDICTED: Bos taurus similar to germinal histone H4 gene (LOC527388), mRNA Length = 312 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 129 atctacgaggaagcccgtggggtg 152 |||||||||||| ||||||||||| Sbjct: 151 atctacgaggaaacccgtggggtg 174
>gb|AY129336.1| Mycobacteriophage Che9d, complete genome Length = 56276 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 gcgacgccgacgcatcatcg 380 |||||||||||||||||||| Sbjct: 18040 gcgacgccgacgcatcatcg 18021
>gb|AC162802.4| Mus musculus BAC clone RP23-363M4 from chromosome 5, complete sequence Length = 234206 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 catggctgctcctgctgtct 78 |||||||||||||||||||| Sbjct: 209326 catggctgctcctgctgtct 209307
>emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence Length = 141545 Score = 40.1 bits (20), Expect = 8.3 Identities = 35/40 (87%) Strand = Plus / Plus Query: 304 tgcccaagtgcgggactacctggatcaaggccctcctcta 343 ||||||||| ||| || || ||||||||||| |||||||| Sbjct: 70712 tgcccaagtccggcacgacgtggatcaaggcgctcctcta 70751
>gb|AF285442.2| Homo sapiens chromosome 8 clone XX-72A2 map 8p23, complete sequence Length = 86113 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 gctccccgcgccgcggctct 498 |||||||||||||||||||| Sbjct: 48813 gctccccgcgccgcggctct 48794
>dbj|AK092368.1| Homo sapiens cDNA FLJ35049 fis, clone OCBBF2018014 Length = 3276 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 gcccgtggggtggtgtccac 160 |||||||||||||||||||| Sbjct: 129 gcccgtggggtggtgtccac 148
>dbj|AB226254.1| Aspergillus oryzae cDNA, contig sequence: AoEST3113 Length = 2058 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 catggtgggctccgtggtcg 255 |||||||||||||||||||| Sbjct: 921 catggtgggctccgtggtcg 902
>dbj|AP007150.1| Aspergillus oryzae RIB40 genomic DNA, SC009 Length = 1913118 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 catggtgggctccgtggtcg 255 |||||||||||||||||||| Sbjct: 1204721 catggtgggctccgtggtcg 1204702
>gb|AC025857.5| Homo sapiens chromosome 8, clone RP11-589N15, complete sequence Length = 175749 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 gctccccgcgccgcggctct 498 |||||||||||||||||||| Sbjct: 121788 gctccccgcgccgcggctct 121769
>ref|XM_685658.1| PREDICTED: Danio rerio similar to rho/rac guanine nucleotide exchange factor (GEF) 18 (LOC562264), mRNA Length = 3303 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 cgtggcaccgacgtgctcct 295 |||||||||||||||||||| Sbjct: 2326 cgtggcaccgacgtgctcct 2345
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.3 Identities = 35/40 (87%) Strand = Plus / Plus Query: 304 tgcccaagtgcgggactacctggatcaaggccctcctcta 343 ||||||||| ||| || || ||||||||||| |||||||| Sbjct: 26294135 tgcccaagtccggcacgacgtggatcaaggcgctcctcta 26294174
>gb|AC012366.10| Homo sapiens BAC clone RP11-466M21 from 2, complete sequence Length = 197775 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 gcccgtggggtggtgtccac 160 |||||||||||||||||||| Sbjct: 43342 gcccgtggggtggtgtccac 43361
>emb|BX648239.1|HSM808387 Homo sapiens mRNA; cDNA DKFZp686H09108 (from clone DKFZp686H09108) Length = 7732 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 gctccccgcgccgcggctct 498 |||||||||||||||||||| Sbjct: 152 gctccccgcgccgcggctct 171
>gb|AC164973.4| Ornithorhynchus anatinus BAC clone OABb-265H16 from chromosome unknown, complete sequence Length = 129291 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 cccacaactcccaccagctc 422 |||||||||||||||||||| Sbjct: 83247 cccacaactcccaccagctc 83266
>gb|AF010496.1|AF010496 Rhodobacter capsulatus strain SB1003, partial genome Length = 189370 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 gccgccctccatcgcggcgt 546 |||||||||||||||||||| Sbjct: 44326 gccgccctccatcgcggcgt 44307 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,544,069 Number of Sequences: 3902068 Number of extensions: 3544069 Number of successful extensions: 63268 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62769 Number of HSP's gapped (non-prelim): 476 length of query: 608 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 585 effective length of database: 17,143,297,704 effective search space: 10028829156840 effective search space used: 10028829156840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
