ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart46h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y593_PYRFU (Q8U378) UPF0282 protein PF0593 30 6.5
2FBXL5_HUMAN (Q9UKA1) F-box/LRR-repeat protein 5 (F-box and leuci... 30 6.5

>Y593_PYRFU (Q8U378) UPF0282 protein PF0593|
          Length = 310

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 156 GDSVVLQYGDGRAEFLPPVADGRD 227
           GDS    +GD + EF PPV  GR+
Sbjct: 138 GDSKTFDFGDFKIEFSPPVPHGRE 161



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>FBXL5_HUMAN (Q9UKA1) F-box/LRR-repeat protein 5 (F-box and leucine-rich repeat|
           protein 5) (F-box protein FBL4/FBL5) (p45SKP2-like
           protein)
          Length = 691

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +1

Query: 163 QWFSNMVMDEPSFFHQWQTDATL---EQYTEQQIAVAFGQGE 279
           +W  N   DE   FH+W  DA +   E+  E+ IA++  Q E
Sbjct: 273 EWVKNR-KDESRAFHEWDEDADIDESEESAEESIAISIAQME 313


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,499,291
Number of Sequences: 219361
Number of extensions: 645684
Number of successful extensions: 2234
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2233
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4929664480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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