>Y463_MYCPN (P75320) Hypothetical protein MPN463 (H08_orf157a)|
          Length = 157

 Score = 32.3 bits (72), Expect = 0.64
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 92  LRSPSVAAPGEAPRRSALTNSPWPLPPSL 6
           ++ P V AP   P +++ +N+PWPL P +
Sbjct: 127 IKVPMVRAPSTKPSKTSSSNNPWPLTPRM 155

>PELB_ERWCH (P04959) Pectate lyase B precursor (EC 4.2.2.2)|
          Length = 375

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 37  VKADRRGASPGAATEGERRRVDEPPDILLCLPRLLRAHHPSDPALQG 177
           V+  R G  PG A +G+  R+D  P++ L    L  A+H  D    G
Sbjct: 136 VRNMRIGYLPGGAQDGDMFRIDNSPNVWLDHNELFAANHECDGTKDG 182

>RGS20_CHICK (Q9PWA1) Regulator of G-protein signaling 20 (RGS20) (Gz-GAP)|
          Length = 218

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = -3

Query: 220 CNLNWCGACACS---TRDPEERDLKDDEHEVDAGGI 122
           C   WC  C+CS    R+ EE   +   HE+ A GI
Sbjct: 37  CCFCWCCCCSCSCLTVRNQEEERARRTSHELQAEGI 72

>PELC_ERWCH (P11073) Pectate lyase C precursor (EC 4.2.2.2)|
          Length = 375

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 49  RRGASPGAATEGERRRVDEPPDILLCLPRLLRAHHPSD 162
           R G  PG A +G+  RVD+ P++ +    L  A+H  D
Sbjct: 141 RIGYLPGGAKDGDMIRVDDSPNVWVDHNELFAANHECD 178

>DNLJ_BACHD (Q9KF37) DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase|
           [NAD+])
          Length = 669

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 22/74 (29%), Positives = 34/74 (45%)
 Frame = +1

Query: 46  DRRGASPGAATEGERRRVDEPPDILLCLPRLLRAHHPSDPALQGPL*SRHMHHTNSNYIF 225
           + R A+P  A  G  R++D      L   R L A   +  +++G     H HH   NY+ 
Sbjct: 190 EERFANPRNAAAGSLRQLDPK----LAAKRHLDAFIYAIGSVEGK--ELHSHHEGLNYLK 243

Query: 226 TVGLK*DIPTICCE 267
           T+G K +  +  CE
Sbjct: 244 TIGFKINPESAYCE 257

>SEM6B_MOUSE (O54951) Semaphorin-6B precursor (Semaphorin VIB) (Sema VIB)|
           (Semaphorin N) (Sema N)
          Length = 886

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 61  SPGAATEGERRRVDEPPDILLCLPRLLRAHHPSD 162
           +P  A+E  +   +  P+  LC PR  RA HP D
Sbjct: 755 APARASEQPQVPAEPGPESRLCAPRSCRASHPGD 788

>DEG1_CAEEL (P24585) Degenerin deg-1 (Degeneration of certain neurons protein|
           1)
          Length = 778

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
 Frame = +2

Query: 194 TCTTPIQITSSQLVSNEIFPPSVVKAMLYPGAIVRNLTTSMSMTFPRWSDLFDIYNLTEA 373
           T TTP   T+S   +    PP    A     AIV N  T  +M F   +D   +  LT A
Sbjct: 352 TTTTPPPTTTSTTTTTTTTPPPTTTARPNQRAIVSNPETIKAMGFQGMTD--GVAMLTRA 409

Query: 374 K-----NASAVIDLQRLEM 415
           K       +A+ D QR+ +
Sbjct: 410 KENLMFTMAALSDKQRIAL 428

>UL31_EBV (P03183) Protein BFLF2|
          Length = 318

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = -1

Query: 399 RSITAEAFLASVRLYMSNRSLHLGNVMLMLVVRLRTIAPG*SMAFTTDGGNISFETNCED 220
           R I+A   L    L   N  +H+   +  L + L T++PG  +  +  G +++  ++CE 
Sbjct: 89  RGISANFELGKDFLREMNTPIHVSEAVF-LPLSLCTLSPGRCLRLSPFGHSLTLGSHCEI 147

Query: 219 VI*IGVVHVP 190
            I    VHVP
Sbjct: 148 CINRSQVHVP 157


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,676,282
Number of Sequences: 219361
Number of extensions: 1158234
Number of successful extensions: 3440
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3440
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)