ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart46g11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_193445.1| Oryza sativa (japonica cultivar-group), predic... 404 e-109
2dbj|AK068308.1| Oryza sativa (japonica cultivar-group) cDNA clon... 396 e-107
3gb|AY110669.1| Zea mays CL6544_1 mRNA sequence 289 4e-75
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 238 1e-59
5dbj|AP003902.3| Oryza sativa (japonica cultivar-group) genomic D... 238 1e-59
6dbj|AP003372.2| Oryza sativa (japonica cultivar-group) genomic D... 238 1e-59
7dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 84 5e-13
8dbj|AP003613.3| Oryza sativa (japonica cultivar-group) genomic D... 84 5e-13
9emb|AL590633.9| Mouse DNA sequence from clone RP23-211O23 on chr... 46 0.10
10gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 44 0.41
11emb|CR974455.5| Mouse DNA sequence from clone RP24-65D22 on chro... 42 1.6
12gb|AC104326.20| Mus musculus strain C57BL/6J chromosome 2 clone ... 42 1.6
13emb|AL928868.5| Mouse DNA sequence from clone RP23-428O15 on chr... 42 1.6
14emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 42 1.6
15gb|AY662601.1| Oplurus cuvieri recombination activating gene 1 (... 40 6.4
16ref|XM_469589.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.4
17gb|AC146936.4| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
18ref|NM_130982.1| Danio rerio noggin 3 (nog3), mRNA 40 6.4
19gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.4
20emb|CT009719.10| Mouse DNA sequence from clone RP23-65P17 on chr... 40 6.4
21gb|AC144706.2| Danio rerio clone CH211-164M18, complete sequence 40 6.4
22gb|AC137997.2| Oryza sativa chromosome 3 BAC OJ1499_D04 genomic ... 40 6.4
23emb|AL034422.24|HS1141E15 Human DNA sequence from clone RP5-1141... 40 6.4
24gb|AY988018.1| Chalarodon madagascariensis recombination activat... 40 6.4
25gb|AY988017.1| Oplurus cuvieri recombination activating protein ... 40 6.4
26emb|AL928938.3| Zebrafish DNA sequence from clone BUSM1-64D20 in... 40 6.4
27gb|AC087490.6| Homo sapiens chromosome 15, clone RP11-810H22, co... 40 6.4
28gb|AC103750.2| Homo sapiens chromosome 15, clone RP11-494F2, com... 40 6.4
29gb|AC026385.19|AC026385 Mus musculus 17 BAC RP23-413K14 complete... 40 6.4
30dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
31gb|AF084949.1|AF084949 Danio rerio Noggin (noggin) mRNA, complet... 40 6.4
32emb|BX470069.10| Zebrafish DNA sequence from clone RP71-22K7 in ... 40 6.4
33emb|AL935268.6| Zebrafish DNA sequence from clone CH211-199H23 i... 40 6.4 
>ref|NM_193445.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 729

 Score =  404 bits (204), Expect = e-109
 Identities = 341/387 (88%), Gaps = 6/387 (1%)
 Strand = Plus / Plus

                                                                       
Query: 64  ccaggtgcagcgacggagggtgagcggaggcgggtggacgagccgccggatatccttcta 123
           |||||||||||| |||  |||| |||| ||| |||||||||||||||||||||| |||||
Sbjct: 90  ccaggtgcagcggcggccggtgggcgggggccggtggacgagccgccggatatcgttcta 149

                                                                       
Query: 124 tgcctcccgcgtctacttcgtgctcatcatccttcagatcccgctcttcagggtcccttg 183
            |||||||||| || |||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct: 150 cgcctcccgcgccttcttcctcctcatcatcctccagatcccgctcttcagggtcccttg 209

                                                                       
Query: 184 tagagcaggcacatgcaccacaccaattcaaattacatcttcacagttggtctcaaatga 243
           |||||||||||||||||| || || |||||| |||||||||| |||||||||||||||||
Sbjct: 210 tagagcaggcacatgcacaacgcccattcaagttacatcttcgcagttggtctcaaatga 269

                                                                       
Query: 244 gatattcccaccatctgttgtgaaggccatgctctaccctggagctatagtgcgcaacct 303
           |||||||||||||||||||||||| ||| | |||| |||||| |||||||   |||||||
Sbjct: 270 gatattcccaccatctgttgtgaaagcccttctcttccctggggctatagcaagcaacct 329

                                                                       
Query: 304 cactacaagcatgagcatgacatttccaaggtggagtgacctgttcgacatatacaatct 363
            |||      | ||||||||||||||| ||||||| ||||||||| || || |||||| |
Sbjct: 330 tact------aagagcatgacatttcctaggtggaatgacctgtttgatatttacaattt 383

                                                                       
Query: 364 gacagaagctaagaatgcttcagcagtaattgatctacagcgtctagagatgcttgctgg 423
           ||||||||| ||||  |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 384 gacagaagccaagaccgcttcagcagtaattgatctccagcgtctagagattcttgctgg 443

                                      
Query: 424 aagctacttctgtgttgctggagcact 450
           |||||||||||||| ||||||||||||
Sbjct: 444 aagctacttctgtgctgctggagcact 470



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 4  gaaagagagggcggcagaggccagggcgag 33
          ||||||||||||||| ||||| ||||||||
Sbjct: 18 gaaagagagggcggcggaggcgagggcgag 47
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>dbj|AK068308.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146J22, full
           insert sequence
          Length = 950

 Score =  396 bits (200), Expect = e-107
 Identities = 340/387 (87%), Gaps = 6/387 (1%)
 Strand = Plus / Plus

                                                                       
Query: 64  ccaggtgcagcgacggagggtgagcggaggcgggtggacgagccgccggatatccttcta 123
           |||||||||||| |||  |||| |||| ||| |||||||||||||||||||||| |||||
Sbjct: 126 ccaggtgcagcggcggccggtgggcgggggccggtggacgagccgccggatatcgttcta 185

                                                                       
Query: 124 tgcctcccgcgtctacttcgtgctcatcatccttcagatcccgctcttcagggtcccttg 183
            |||||||||| || |||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct: 186 cgcctcccgcgccttcttcctcctcatcatcctccagatcccgctcttcagggtcccttg 245

                                                                       
Query: 184 tagagcaggcacatgcaccacaccaattcaaattacatcttcacagttggtctcaaatga 243
           |||||||||||||||||| || || |||||| |||||||||| |||||||||||||||||
Sbjct: 246 tagagcaggcacatgcacaacgcccattcaagttacatcttcgcagttggtctcaaatga 305

                                                                       
Query: 244 gatattcccaccatctgttgtgaaggccatgctctaccctggagctatagtgcgcaacct 303
           |||||||||||||||||||||||| ||| | |||| |||||| |||||||   |||||||
Sbjct: 306 gatattcccaccatctgttgtgaaagcccttctcttccctggggctatagcaagcaacct 365

                                                                       
Query: 304 cactacaagcatgagcatgacatttccaaggtggagtgacctgttcgacatatacaatct 363
            |||      | ||||||||||||||| ||||||| ||||||||| || || |||||| |
Sbjct: 366 tact------aagagcatgacatttcctaggtggaatgacctgtttgatatttacaattt 419

                                                                       
Query: 364 gacagaagctaagaatgcttcagcagtaattgatctacagcgtctagagatgcttgctgg 423
           |||||| || ||||  |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 420 gacagatgccaagaccgcttcagcagtaattgatctccagcgtctagagattcttgctgg 479

                                      
Query: 424 aagctacttctgtgttgctggagcact 450
           |||||||||||||| ||||||||||||
Sbjct: 480 aagctacttctgtgctgctggagcact 506



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 4  gaaagagagggcggcagaggccagggcgag 33
          ||||||||||||||| ||||| ||||||||
Sbjct: 54 gaaagagagggcggcggaggcgagggcgag 83
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>gb|AY110669.1| Zea mays CL6544_1 mRNA sequence
          Length = 933

 Score =  289 bits (146), Expect = 4e-75
 Identities = 298/351 (84%), Gaps = 6/351 (1%)
 Strand = Plus / Plus

                                                                       
Query: 93  gcgggtggacgagccgccggatatccttctatgcctcccgcgtctacttcgtgctcatca 152
           |||| ||||||||||| ||||| ||| |||||  | |||| ||||||||| | |||||||
Sbjct: 130 gcggttggacgagccgtcggatctccatctatcgcccccgagtctacttcctcctcatca 189

                                                                       
Query: 153 tccttcagatcccgctcttcagggtcccttgtagagcaggcacatgcaccacaccaattc 212
           | || |||||||||||||||||||||||||||||||| ||||||||||| || || ||||
Sbjct: 190 tgctccagatcccgctcttcagggtcccttgtagagctggcacatgcacaactcctattc 249

                                                                       
Query: 213 aaattacatcttcacagttggtctcaaatgagatattcccaccatctgttgtgaaggcca 272
           || | ||||| || ||||||||||||||||| ||||||||| || |||||||||||||||
Sbjct: 250 aagtaacatcatctcagttggtctcaaatgatatattcccagcagctgttgtgaaggcca 309

                                                                       
Query: 273 tgctctaccctggagctatagtgcgcaacctcactacaagcatgagcatgacatttccaa 332
           ||||||||||||||||||  ||| ||| ||| |||| |      |||| ||||||||| |
Sbjct: 310 tgctctaccctggagctaccgtgagcagcctaactaaa------agcaagacatttccga 363

                                                                       
Query: 333 ggtggagtgacctgttcgacatatacaatctgacagaagctaagaatgcttcagcagtaa 392
           | |||| ||||||||| ||||| ||||| |||||||||||      |||||| |||||| 
Sbjct: 364 gttggaatgacctgtttgacatgtacaacctgacagaagcnnnnnntgcttctgcagtag 423

                                                              
Query: 393 ttgatctacagcgtctagagatgcttgctggaagctacttctgtgttgctg 443
           ||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 424 ttgatctccagcgtctagagatacttgccggaagctacttctgtgttgctg 474
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  238 bits (120), Expect = 1e-59
 Identities = 212/243 (87%), Gaps = 6/243 (2%)
 Strand = Plus / Minus

                                                                            
Query: 170      ttcagggtcccttgtagagcaggcacatgcaccacaccaattcaaattacatcttcacag 229
                |||||||||||||||||||||||||||||||| || || |||||| |||||||||| |||
Sbjct: 20939226 ttcagggtcccttgtagagcaggcacatgcacaacgcccattcaagttacatcttcgcag 20939167

                                                                            
Query: 230      ttggtctcaaatgagatattcccaccatctgttgtgaaggccatgctctaccctggagct 289
                |||||||||||||||||||||||||||||||||||||| ||| | |||| |||||| |||
Sbjct: 20939166 ttggtctcaaatgagatattcccaccatctgttgtgaaagcccttctcttccctggggct 20939107

                                                                            
Query: 290      atagtgcgcaacctcactacaagcatgagcatgacatttccaaggtggagtgacctgttc 349
                ||||   ||||||| |||      | ||||||||||||||| ||||||| ||||||||| 
Sbjct: 20939106 atagcaagcaaccttact------aagagcatgacatttcctaggtggaatgacctgttt 20939053

                                                                            
Query: 350      gacatatacaatctgacagaagctaagaatgcttcagcagtaattgatctacagcgtcta 409
                || || |||||| |||||||||| ||||  |||||||||||||||||||| |||||||||
Sbjct: 20939052 gatatttacaatttgacagaagccaagaccgcttcagcagtaattgatctccagcgtcta 20938993

                   
Query: 410      gag 412
                |||
Sbjct: 20938992 gag 20938990



 Score =  119 bits (60), Expect = 9e-24
 Identities = 99/112 (88%)
 Strand = Plus / Minus

                                                                            
Query: 64       ccaggtgcagcgacggagggtgagcggaggcgggtggacgagccgccggatatccttcta 123
                |||||||||||| |||  |||| |||| ||| |||||||||||||||||||||| |||||
Sbjct: 20941708 ccaggtgcagcggcggccggtgggcgggggccggtggacgagccgccggatatcgttcta 20941649

                                                                    
Query: 124      tgcctcccgcgtctacttcgtgctcatcatccttcagatcccgctcttcagg 175
                 |||||||||| || |||| | ||||||||||| ||||||||||||||||||
Sbjct: 20941648 cgcctcccgcgccttcttcctcctcatcatcctccagatcccgctcttcagg 20941597



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                        
Query: 411      agatgcttgctggaagctacttctgtgttgctggagcact 450
                |||| |||||||||||||||||||||| ||||||||||||
Sbjct: 20938896 agattcttgctggaagctacttctgtgctgctggagcact 20938857



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 4        gaaagagagggcggcagaggccagggcgag 33
                ||||||||||||||| ||||| ||||||||
Sbjct: 20941780 gaaagagagggcggcggaggcgagggcgag 20941751
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>dbj|AP003902.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1110C07
          Length = 173859

 Score =  238 bits (120), Expect = 1e-59
 Identities = 212/243 (87%), Gaps = 6/243 (2%)
 Strand = Plus / Minus

                                                                          
Query: 170    ttcagggtcccttgtagagcaggcacatgcaccacaccaattcaaattacatcttcacag 229
              |||||||||||||||||||||||||||||||| || || |||||| |||||||||| |||
Sbjct: 157668 ttcagggtcccttgtagagcaggcacatgcacaacgcccattcaagttacatcttcgcag 157609

                                                                          
Query: 230    ttggtctcaaatgagatattcccaccatctgttgtgaaggccatgctctaccctggagct 289
              |||||||||||||||||||||||||||||||||||||| ||| | |||| |||||| |||
Sbjct: 157608 ttggtctcaaatgagatattcccaccatctgttgtgaaagcccttctcttccctggggct 157549

                                                                          
Query: 290    atagtgcgcaacctcactacaagcatgagcatgacatttccaaggtggagtgacctgttc 349
              ||||   ||||||| |||      | ||||||||||||||| ||||||| ||||||||| 
Sbjct: 157548 atagcaagcaaccttact------aagagcatgacatttcctaggtggaatgacctgttt 157495

                                                                          
Query: 350    gacatatacaatctgacagaagctaagaatgcttcagcagtaattgatctacagcgtcta 409
              || || |||||| |||||||||| ||||  |||||||||||||||||||| |||||||||
Sbjct: 157494 gatatttacaatttgacagaagccaagaccgcttcagcagtaattgatctccagcgtcta 157435

                 
Query: 410    gag 412
              |||
Sbjct: 157434 gag 157432



 Score =  119 bits (60), Expect = 9e-24
 Identities = 99/112 (88%)
 Strand = Plus / Minus

                                                                          
Query: 64     ccaggtgcagcgacggagggtgagcggaggcgggtggacgagccgccggatatccttcta 123
              |||||||||||| |||  |||| |||| ||| |||||||||||||||||||||| |||||
Sbjct: 160150 ccaggtgcagcggcggccggtgggcgggggccggtggacgagccgccggatatcgttcta 160091

                                                                  
Query: 124    tgcctcccgcgtctacttcgtgctcatcatccttcagatcccgctcttcagg 175
               |||||||||| || |||| | ||||||||||| ||||||||||||||||||
Sbjct: 160090 cgcctcccgcgccttcttcctcctcatcatcctccagatcccgctcttcagg 160039



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                      
Query: 411    agatgcttgctggaagctacttctgtgttgctggagcact 450
              |||| |||||||||||||||||||||| ||||||||||||
Sbjct: 157338 agattcttgctggaagctacttctgtgctgctggagcact 157299



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 4      gaaagagagggcggcagaggccagggcgag 33
              ||||||||||||||| ||||| ||||||||
Sbjct: 160222 gaaagagagggcggcggaggcgagggcgag 160193
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>dbj|AP003372.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:OJ1014_G12
          Length = 158830

 Score =  238 bits (120), Expect = 1e-59
 Identities = 212/243 (87%), Gaps = 6/243 (2%)
 Strand = Plus / Minus

                                                                        
Query: 170  ttcagggtcccttgtagagcaggcacatgcaccacaccaattcaaattacatcttcacag 229
            |||||||||||||||||||||||||||||||| || || |||||| |||||||||| |||
Sbjct: 2428 ttcagggtcccttgtagagcaggcacatgcacaacgcccattcaagttacatcttcgcag 2369

                                                                        
Query: 230  ttggtctcaaatgagatattcccaccatctgttgtgaaggccatgctctaccctggagct 289
            |||||||||||||||||||||||||||||||||||||| ||| | |||| |||||| |||
Sbjct: 2368 ttggtctcaaatgagatattcccaccatctgttgtgaaagcccttctcttccctggggct 2309

                                                                        
Query: 290  atagtgcgcaacctcactacaagcatgagcatgacatttccaaggtggagtgacctgttc 349
            ||||   ||||||| |||      | ||||||||||||||| ||||||| ||||||||| 
Sbjct: 2308 atagcaagcaaccttact------aagagcatgacatttcctaggtggaatgacctgttt 2255

                                                                        
Query: 350  gacatatacaatctgacagaagctaagaatgcttcagcagtaattgatctacagcgtcta 409
            || || |||||| |||||||||| ||||  |||||||||||||||||||| |||||||||
Sbjct: 2254 gatatttacaatttgacagaagccaagaccgcttcagcagtaattgatctccagcgtcta 2195

               
Query: 410  gag 412
            |||
Sbjct: 2194 gag 2192



 Score =  119 bits (60), Expect = 9e-24
 Identities = 99/112 (88%)
 Strand = Plus / Minus

                                                                        
Query: 64   ccaggtgcagcgacggagggtgagcggaggcgggtggacgagccgccggatatccttcta 123
            |||||||||||| |||  |||| |||| ||| |||||||||||||||||||||| |||||
Sbjct: 4910 ccaggtgcagcggcggccggtgggcgggggccggtggacgagccgccggatatcgttcta 4851

                                                                
Query: 124  tgcctcccgcgtctacttcgtgctcatcatccttcagatcccgctcttcagg 175
             |||||||||| || |||| | ||||||||||| ||||||||||||||||||
Sbjct: 4850 cgcctcccgcgccttcttcctcctcatcatcctccagatcccgctcttcagg 4799



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                    
Query: 411  agatgcttgctggaagctacttctgtgttgctggagcact 450
            |||| |||||||||||||||||||||| ||||||||||||
Sbjct: 2098 agattcttgctggaagctacttctgtgctgctggagcact 2059



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 4    gaaagagagggcggcagaggccagggcgag 33
            ||||||||||||||| ||||| ||||||||
Sbjct: 4982 gaaagagagggcggcggaggcgagggcgag 4953
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                            
Query: 96       ggtggacgagccgccggatatccttctatgcctcccgcgtctacttcgtgctcatcatcc 155
                |||||||||||||||||||||  |||||  ||||||||| || |||| | ||||||||||
Sbjct: 20814315 ggtggacgagccgccggatattgttctacacctcccgcgccttcttcctcctcatcatcc 20814374

                                  
Query: 156      ttcagatcccgctcttca 173
                | ||||||||||||||||
Sbjct: 20814375 tccagatcccgctcttca 20814392
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>dbj|AP003613.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0458E11
          Length = 148798

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                         
Query: 96    ggtggacgagccgccggatatccttctatgcctcccgcgtctacttcgtgctcatcatcc 155
             |||||||||||||||||||||  |||||  ||||||||| || |||| | ||||||||||
Sbjct: 68990 ggtggacgagccgccggatattgttctacacctcccgcgccttcttcctcctcatcatcc 69049

                               
Query: 156   ttcagatcccgctcttca 173
             | ||||||||||||||||
Sbjct: 69050 tccagatcccgctcttca 69067
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>emb|AL590633.9| Mouse DNA sequence from clone RP23-211O23 on chromosome X, complete
              sequence
          Length = 179289

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 200    accacaccaattcaaattacatc 222
              |||||||||||||||||||||||
Sbjct: 110114 accacaccaattcaaattacatc 110092
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 426     gctacttctgtgttgctggagc 447
               ||||||||||||||||||||||
Sbjct: 4535398 gctacttctgtgttgctggagc 4535419
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>emb|CR974455.5| Mouse DNA sequence from clone RP24-65D22 on chromosome 2, complete
              sequence
          Length = 193651

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 53     gcggggcctccccaggtgcag 73
              |||||||||||||||||||||
Sbjct: 137550 gcggggcctccccaggtgcag 137570
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>gb|AC104326.20| Mus musculus strain C57BL/6J chromosome 2 clone rp23-20g17, complete
              sequence
          Length = 232241

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 53     gcggggcctccccaggtgcag 73
              |||||||||||||||||||||
Sbjct: 174133 gcggggcctccccaggtgcag 174153
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>emb|AL928868.5| Mouse DNA sequence from clone RP23-428O15 on chromosome 2, complete
             sequence
          Length = 146169

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 53    gcggggcctccccaggtgcag 73
             |||||||||||||||||||||
Sbjct: 44648 gcggggcctccccaggtgcag 44668
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 127     ctcccgcgtctacttcgtgctcatc 151
               |||| ||||||||||||||||||||
Sbjct: 1118228 ctccagcgtctacttcgtgctcatc 1118252
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>gb|AY662601.1| Oplurus cuvieri recombination activating gene 1 (RAG-1) gene, partial
            cds
          Length = 2874

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 427  ctacttctgtgttgctggag 446
            ||||||||||||||||||||
Sbjct: 1474 ctacttctgtgttgctggag 1455
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>ref|XM_469589.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2415

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 235 ctcaaatgagatattcccaccatc 258
           ||||||||||| ||||||||||||
Sbjct: 867 ctcaaatgagaaattcccaccatc 844
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>gb|AC146936.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1154F06
            map near C10769, complete sequence
          Length = 194856

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 235  ctcaaatgagatattcccaccatc 258
            ||||||||||| ||||||||||||
Sbjct: 3362 ctcaaatgagaaattcccaccatc 3339
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>ref|NM_130982.1| Danio rerio noggin 3 (nog3), mRNA
          Length = 672

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 156 ttcagatcccgctcttcagggtcc 179
           |||||||||||||||| |||||||
Sbjct: 179 ttcagatcccgctctttagggtcc 156
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 235      ctcaaatgagatattcccaccatc 258
                ||||||||||| ||||||||||||
Sbjct: 29135929 ctcaaatgagaaattcccaccatc 29135952
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>emb|CT009719.10| Mouse DNA sequence from clone RP23-65P17 on chromosome 17, complete
              sequence
          Length = 205369

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 146    ctcatcatccttcagatccc 165
              ||||||||||||||||||||
Sbjct: 175813 ctcatcatccttcagatccc 175832
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>gb|AC144706.2| Danio rerio clone CH211-164M18, complete sequence
          Length = 149960

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 156   ttcagatcccgctcttcagggtcc 179
             |||||||||||||||| |||||||
Sbjct: 77808 ttcagatcccgctctttagggtcc 77831
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>gb|AC137997.2| Oryza sativa chromosome 3 BAC OJ1499_D04 genomic sequence, complete
             sequence
          Length = 91084

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 235   ctcaaatgagatattcccaccatc 258
             ||||||||||| ||||||||||||
Sbjct: 35447 ctcaaatgagaaattcccaccatc 35424
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>emb|AL034422.24|HS1141E15 Human DNA sequence from clone RP5-1141E15 on chromosome 20q11.23-12
              Contains the 5' end of GHRH gene for growth hormone
              releasing hormone, the MANBAL gene for mannosidase beta A
              lysosomal-like, the 5' end of the SRC gene for v-src avian
              sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog and a
              CpG island, complete sequence
          Length = 113681

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    gcaggcacatgcaccacacc 207
              ||||||||||||||||||||
Sbjct: 105086 gcaggcacatgcaccacacc 105105
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>gb|AY988018.1| Chalarodon madagascariensis recombination activating protein 1
           (RAG1) gene, partial cds
          Length = 851

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 427 ctacttctgtgttgctggag 446
           ||||||||||||||||||||
Sbjct: 112 ctacttctgtgttgctggag 93
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>gb|AY988017.1| Oplurus cuvieri recombination activating protein 1 (RAG1) gene,
           partial cds
          Length = 872

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 427 ctacttctgtgttgctggag 446
           ||||||||||||||||||||
Sbjct: 121 ctacttctgtgttgctggag 102
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>emb|AL928938.3| Zebrafish DNA sequence from clone BUSM1-64D20 in linkage group 12
             Contains the zebrafish nog3 gene for noggin 3, two novel
             genes for protein with a type I
             phosphodiesterase/nucleotide pyrophosphatase domain and a
             CpG island, complete sequence
          Length = 96976

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 156   ttcagatcccgctcttcagggtcc 179
             |||||||||||||||| |||||||
Sbjct: 94150 ttcagatcccgctctttagggtcc 94173
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>gb|AC087490.6| Homo sapiens chromosome 15, clone RP11-810H22, complete sequence
          Length = 183342

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 423    gaagctacttctgtgttgctggag 446
              ||||||||||||||| ||||||||
Sbjct: 156955 gaagctacttctgtgctgctggag 156978
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>gb|AC103750.2| Homo sapiens chromosome 15, clone RP11-494F2, complete sequence
          Length = 179486

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 423    gaagctacttctgtgttgctggag 446
              ||||||||||||||| ||||||||
Sbjct: 110773 gaagctacttctgtgctgctggag 110750
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>gb|AC026385.19|AC026385 Mus musculus 17 BAC RP23-413K14 complete sequence
          Length = 222610

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   ctcatcatccttcagatccc 165
             ||||||||||||||||||||
Sbjct: 10864 ctcatcatccttcagatccc 10883
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 235      ctcaaatgagatattcccaccatc 258
                ||||||||||| ||||||||||||
Sbjct: 29227351 ctcaaatgagaaattcccaccatc 29227374
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>gb|AF084949.1|AF084949 Danio rerio Noggin (noggin) mRNA, complete cds
          Length = 672

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 156 ttcagatcccgctcttcagggtcc 179
           |||||||||||||||| |||||||
Sbjct: 179 ttcagatcccgctctttagggtcc 156
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>emb|BX470069.10| Zebrafish DNA sequence from clone RP71-22K7 in linkage group 12,
             complete sequence
          Length = 169641

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 156   ttcagatcccgctcttcagggtcc 179
             |||||||||||||||| |||||||
Sbjct: 57600 ttcagatcccgctctttagggtcc 57623
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>emb|AL935268.6| Zebrafish DNA sequence from clone CH211-199H23 in linkage group 12,
             complete sequence
          Length = 206438

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 156   ttcagatcccgctcttcagggtcc 179
             |||||||||||||||| |||||||
Sbjct: 86643 ttcagatcccgctctttagggtcc 86666


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,982,348
Number of Sequences: 3902068
Number of extensions: 3982348
Number of successful extensions: 65808
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65643
Number of HSP's gapped (non-prelim): 164
length of query: 474
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 452
effective length of database: 17,147,199,772
effective search space: 7750534296944
effective search space used: 7750534296944
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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