ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart46e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF527606.1| Hordeum vulgare iron/ascorbate-dependent oxidored... 74 4e-11
2gb|CP000249.1| Frankia sp. CcI3, complete genome 42 0.16
3ref|NM_185692.1| Oryza sativa (japonica cultivar-group), Ozsa804... 40 0.62
4ref|XM_476309.1| Oryza sativa (japonica cultivar-group), predic... 40 0.62
5emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 0.62
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 0.62
7dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic D... 40 0.62
8dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic D... 40 0.62
9ref|NM_001007561.1| Homo sapiens immunity-related GTPase family,... 38 2.5
10ref|XM_512718.1| PREDICTED: Pan troglodytes similar to FKSG27 (L... 38 2.5
11gb|BC028792.1| Mus musculus adiponutrin, mRNA (cDNA clone MGC:41... 38 2.5
12ref|NM_054088.1| Mus musculus adiponutrin (Adpn), mRNA 38 2.5
13emb|AJ508984.1|EBE508984 Euphorbia bemarahaensis ITS1, 5.8S rRNA... 38 2.5
14gb|AF322648.1|AF322648 Homo sapiens FKSG27 (FKSG27) mRNA, comple... 38 2.5
15gb|AY037763.1| Mus musculus adiponutrin mRNA, complete cds 38 2.5
16gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 38 2.5
17dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 2.5
18gb|AY137296.1| Acridocarpus excelsus isolate 66 clone a internal... 38 2.5
19emb|Z66096.1|HS75G5R H.sapiens CpG island DNA genomic Mse1 fragm... 38 2.5
20gb|AC006276.1|AC006276 Homo sapiens chromosome 19, cosmid R28379... 38 2.5
21emb|CR628404.7| Zebrafish DNA sequence from clone CH211-156B18 i... 38 2.5
22gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 2.5
23emb|AL954364.5|CNS08CCZ Oryza sativa chromosome 12, . BAC OSJNBa... 38 2.5
24emb|AL626769.18| Mouse DNA sequence from clone RP23-23A6 on chro... 38 2.5
25ref|XM_366361.1| Magnaporthe grisea 70-15 chromosome VII hypothe... 36 9.7
26gb|AY525079.1| Caenorhabditis elegans serine or cysteine proteas... 36 9.7
27ref|XM_752045.1| Ustilago maydis 521 hypothetical protein (UM009... 36 9.7
28ref|XM_968023.1| PREDICTED: Tribolium castaneum similar to Putat... 36 9.7
29emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, ... 36 9.7
30emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete ... 36 9.7
31emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete ... 36 9.7
32emb|AJ251805.1|BPH251805 Bacteriophage phiYeO3-12 complete genome 36 9.7
33emb|BX510923.8| Zebrafish DNA sequence from clone CH211-214J8 in... 36 9.7
34gb|AC157652.3| Mus musculus BAC clone RP24-324J2 from chromosome... 36 9.7
35gb|AE005104.1| Halobacterium sp. NRC-1 section 135 of 170 of the... 36 9.7

>gb|AF527606.1| Hordeum vulgare iron/ascorbate-dependent oxidoreductase (Hcp1)
           mRNA, complete cds
          Length = 1360

 Score = 73.8 bits (37), Expect = 4e-11
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                       
Query: 1   cggctcacggacgtcgacgaggccgaaaggctccgggcggcgctgcagacatggggcttc 60
           ||||||| ||||| |||||||||||| | |||||||||||| || ||||| |||||||||
Sbjct: 181 cggctcatggacgccgacgaggccgacaagctccgggcggctctacagacctggggcttc 240

                
Query: 61  ttcct 65
           |||||
Sbjct: 241 ttcct 245



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 0.16
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 1       cggctcacggacgtcgacgag 21
               |||||||||||||||||||||
Sbjct: 4560845 cggctcacggacgtcgacgag 4560865



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>ref|NM_185692.1| Oryza sativa (japonica cultivar-group), Ozsa8043 predicted mRNA
          Length = 1164

 Score = 40.1 bits (20), Expect = 0.62
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 30  gctccgggcggcgctgcagacatggggcttcttcct 65
           |||| ||||||| |||||||  ||||||||||||||
Sbjct: 189 gctcagggcggctctgcagaattggggcttcttcct 224



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>ref|XM_476309.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1053

 Score = 40.1 bits (20), Expect = 0.62
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 30  gctccgggcggcgctgcagacatggggcttcttcct 65
           |||| ||||||| |||||||  ||||||||||||||
Sbjct: 189 gctcagggcggctctgcagaattggggcttcttcct 224



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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 0.62
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 20      aggccgaaaggctccgggcggcgc 43
               ||||||||| ||||||||||||||
Sbjct: 2006697 aggccgaaacgctccgggcggcgc 2006720



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 0.62
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                   
Query: 30      gctccgggcggcgctgcagacatggggcttcttcct 65
               |||| ||||||| |||||||  ||||||||||||||
Sbjct: 3904675 gctcagggcggctctgcagaattggggcttcttcct 3904710



 Score = 40.1 bits (20), Expect = 0.62
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                   
Query: 30      gctccgggcggcgctgcagacatggggcttcttcct 65
               |||| ||||||| |||||||  ||||||||||||||
Sbjct: 3892852 gctcagggcggctctgcagaattggggcttcttcct 3892887



 Score = 40.1 bits (20), Expect = 0.62
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                   
Query: 30      gctccgggcggcgctgcagacatggggcttcttcct 65
               |||| ||||||| |||||||  ||||||||||||||
Sbjct: 3854796 gctcagggcggctctgcagaattggggcttcttcct 3854831



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>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0035I03
          Length = 153749

 Score = 40.1 bits (20), Expect = 0.62
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 30    gctccgggcggcgctgcagacatggggcttcttcct 65
             |||| ||||||| |||||||  ||||||||||||||
Sbjct: 10551 gctcagggcggctctgcagaattggggcttcttcct 10586



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>dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0015E04
          Length = 152046

 Score = 40.1 bits (20), Expect = 0.62
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 30     gctccgggcggcgctgcagacatggggcttcttcct 65
              |||| ||||||| |||||||  ||||||||||||||
Sbjct: 150806 gctcagggcggctctgcagaattggggcttcttcct 150841



 Score = 40.1 bits (20), Expect = 0.62
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 30     gctccgggcggcgctgcagacatggggcttcttcct 65
              |||| ||||||| |||||||  ||||||||||||||
Sbjct: 112750 gctcagggcggctctgcagaattggggcttcttcct 112785



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>ref|NM_001007561.1| Homo sapiens immunity-related GTPase family, Q (IRGQ), mRNA
          Length = 2210

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 31  ctccgggcggcgctgcaga 49
           |||||||||||||||||||
Sbjct: 676 ctccgggcggcgctgcaga 694



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>ref|XM_512718.1| PREDICTED: Pan troglodytes similar to FKSG27 (LOC456095), mRNA
          Length = 1543

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 31  ctccgggcggcgctgcaga 49
           |||||||||||||||||||
Sbjct: 648 ctccgggcggcgctgcaga 666



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>gb|BC028792.1| Mus musculus adiponutrin, mRNA (cDNA clone MGC:41626
          IMAGE:1265861), complete cds
          Length = 1915

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 30 gctccgggcggcgctgcag 48
          |||||||||||||||||||
Sbjct: 36 gctccgggcggcgctgcag 18



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>ref|NM_054088.1| Mus musculus adiponutrin (Adpn), mRNA
          Length = 3007

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 30 gctccgggcggcgctgcag 48
          |||||||||||||||||||
Sbjct: 28 gctccgggcggcgctgcag 10



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>emb|AJ508984.1|EBE508984 Euphorbia bemarahaensis ITS1, 5.8S rRNA gene and ITS2, specimen
           voucher Haevermans 99 (P)
          Length = 642

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 21  ggccgaaaggctccgggcg 39
           |||||||||||||||||||
Sbjct: 393 ggccgaaaggctccgggcg 375



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>gb|AF322648.1|AF322648 Homo sapiens FKSG27 (FKSG27) mRNA, complete cds
          Length = 2210

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 31  ctccgggcggcgctgcaga 49
           |||||||||||||||||||
Sbjct: 676 ctccgggcggcgctgcaga 694



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>gb|AY037763.1| Mus musculus adiponutrin mRNA, complete cds
          Length = 3007

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 30 gctccgggcggcgctgcag 48
          |||||||||||||||||||
Sbjct: 28 gctccgggcggcgctgcag 10



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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 15     cgacgaggccgaaaggctc 33
              |||||||||||||||||||
Sbjct: 524674 cgacgaggccgaaaggctc 524692



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 21      ggccgaaaggctccgggcggcgc 43
               |||||||||| ||||||||||||
Sbjct: 2304893 ggccgaaagggtccgggcggcgc 2304915



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>gb|AY137296.1| Acridocarpus excelsus isolate 66 clone a internal transcribed
           spacer 1, partial sequence; 5.8S ribosomal RNA gene,
           complete sequence; and internal transcribed spacer 2,
           partial sequence
          Length = 696

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 21  ggccgaaaggctccgggcg 39
           |||||||||||||||||||
Sbjct: 399 ggccgaaaggctccgggcg 381



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>emb|Z66096.1|HS75G5R H.sapiens CpG island DNA genomic Mse1 fragment, clone 75g5, reverse
           read cpg75g5.rt1a
          Length = 301

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 31  ctccgggcggcgctgcaga 49
           |||||||||||||||||||
Sbjct: 231 ctccgggcggcgctgcaga 213



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>gb|AC006276.1|AC006276 Homo sapiens chromosome 19, cosmid R28379, complete sequence
          Length = 38253

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 31    ctccgggcggcgctgcaga 49
             |||||||||||||||||||
Sbjct: 16065 ctccgggcggcgctgcaga 16047



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>emb|CR628404.7| Zebrafish DNA sequence from clone CH211-156B18 in linkage group 10,
              complete sequence
          Length = 168746

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 43     ctgcagacatggggcttcttcct 65
              ||||||||||||||||| |||||
Sbjct: 111579 ctgcagacatggggctttttcct 111557



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 21      ggccgaaaggctccgggcggcgc 43
               |||||||||| ||||||||||||
Sbjct: 2304837 ggccgaaagggtccgggcggcgc 2304859



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>emb|AL954364.5|CNS08CCZ Oryza sativa chromosome 12, . BAC OSJNBa0023M16 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 156258

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 21    ggccgaaaggctccgggcggcgc 43
             |||||||||| ||||||||||||
Sbjct: 30084 ggccgaaagggtccgggcggcgc 30106



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>emb|AL626769.18| Mouse DNA sequence from clone RP23-23A6 on chromosome 15, complete
             sequence
          Length = 221087

 Score = 38.2 bits (19), Expect = 2.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 30    gctccgggcggcgctgcag 48
             |||||||||||||||||||
Sbjct: 43383 gctccgggcggcgctgcag 43365



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>ref|XM_366361.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein
            (MG10579.4) partial mRNA
          Length = 3954

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 28   aggctccgggcggcgctg 45
            ||||||||||||||||||
Sbjct: 3764 aggctccgggcggcgctg 3781



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>gb|AY525079.1| Caenorhabditis elegans serine or cysteine protease inhibitor
           (SRP-2) mRNA, complete cds
          Length = 1195

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 4   ctcacggacgtcgacgag 21
           ||||||||||||||||||
Sbjct: 627 ctcacggacgtcgacgag 644



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>ref|XM_752045.1| Ustilago maydis 521 hypothetical protein (UM00991.1) partial mRNA
          Length = 2313

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 10  gacgtcgacgaggccgaa 27
           ||||||||||||||||||
Sbjct: 685 gacgtcgacgaggccgaa 702



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>ref|XM_968023.1| PREDICTED: Tribolium castaneum similar to Putative transcription
           factor SOX-14 (LOC661892), mRNA
          Length = 939

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 14  tcgacgaggccgaaaggctccg 35
           |||| |||||||||||||||||
Sbjct: 299 tcgaggaggccgaaaggctccg 320



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>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 48     gacatggggcttcttcct 65
              ||||||||||||||||||
Sbjct: 485140 gacatggggcttcttcct 485157



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>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29
          Length = 310550

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 28     aggctccgggcggcgctg 45
              ||||||||||||||||||
Sbjct: 306428 aggctccgggcggcgctg 306445



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>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29
          Length = 321250

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 2      ggctcacggacgtcgacg 19
              ||||||||||||||||||
Sbjct: 171897 ggctcacggacgtcgacg 171914



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>emb|AJ251805.1|BPH251805 Bacteriophage phiYeO3-12 complete genome
          Length = 39600

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 46    cagacatggggcttcttc 63
             ||||||||||||||||||
Sbjct: 14092 cagacatggggcttcttc 14109



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>emb|BX510923.8| Zebrafish DNA sequence from clone CH211-214J8 in linkage group 5,
             complete sequence
          Length = 165838

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 35    gggcggcgctgcagacat 52
             ||||||||||||||||||
Sbjct: 22532 gggcggcgctgcagacat 22549



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>gb|AC157652.3| Mus musculus BAC clone RP24-324J2 from chromosome 10, complete sequence
          Length = 191096

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 48     gacatggggcttcttcct 65
              ||||||||||||||||||
Sbjct: 124730 gacatggggcttcttcct 124747



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>gb|AE005104.1| Halobacterium sp. NRC-1 section 135 of 170 of the complete genome
          Length = 13848

 Score = 36.2 bits (18), Expect = 9.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 9    ggacgtcgacgaggccga 26
            ||||||||||||||||||
Sbjct: 2875 ggacgtcgacgaggccga 2892


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 353,642
Number of Sequences: 3902068
Number of extensions: 353642
Number of successful extensions: 26383
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26071
Number of HSP's gapped (non-prelim): 312
length of query: 65
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 44
effective length of database: 17,151,101,840
effective search space: 754648480960
effective search space used: 754648480960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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