Clone Name | bart46e11 |
---|---|
Clone Library Name | barley_pub |
>gb|AF527606.1| Hordeum vulgare iron/ascorbate-dependent oxidoreductase (Hcp1) mRNA, complete cds Length = 1360 Score = 73.8 bits (37), Expect = 4e-11 Identities = 58/65 (89%) Strand = Plus / Plus Query: 1 cggctcacggacgtcgacgaggccgaaaggctccgggcggcgctgcagacatggggcttc 60 ||||||| ||||| |||||||||||| | |||||||||||| || ||||| ||||||||| Sbjct: 181 cggctcatggacgccgacgaggccgacaagctccgggcggctctacagacctggggcttc 240 Query: 61 ttcct 65 ||||| Sbjct: 241 ttcct 245
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 0.16 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 cggctcacggacgtcgacgag 21 ||||||||||||||||||||| Sbjct: 4560845 cggctcacggacgtcgacgag 4560865
>ref|NM_185692.1| Oryza sativa (japonica cultivar-group), Ozsa8043 predicted mRNA Length = 1164 Score = 40.1 bits (20), Expect = 0.62 Identities = 32/36 (88%) Strand = Plus / Plus Query: 30 gctccgggcggcgctgcagacatggggcttcttcct 65 |||| ||||||| ||||||| |||||||||||||| Sbjct: 189 gctcagggcggctctgcagaattggggcttcttcct 224
>ref|XM_476309.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1053 Score = 40.1 bits (20), Expect = 0.62 Identities = 32/36 (88%) Strand = Plus / Plus Query: 30 gctccgggcggcgctgcagacatggggcttcttcct 65 |||| ||||||| ||||||| |||||||||||||| Sbjct: 189 gctcagggcggctctgcagaattggggcttcttcct 224
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 0.62 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 aggccgaaaggctccgggcggcgc 43 ||||||||| |||||||||||||| Sbjct: 2006697 aggccgaaacgctccgggcggcgc 2006720
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 0.62 Identities = 32/36 (88%) Strand = Plus / Plus Query: 30 gctccgggcggcgctgcagacatggggcttcttcct 65 |||| ||||||| ||||||| |||||||||||||| Sbjct: 3904675 gctcagggcggctctgcagaattggggcttcttcct 3904710 Score = 40.1 bits (20), Expect = 0.62 Identities = 32/36 (88%) Strand = Plus / Plus Query: 30 gctccgggcggcgctgcagacatggggcttcttcct 65 |||| ||||||| ||||||| |||||||||||||| Sbjct: 3892852 gctcagggcggctctgcagaattggggcttcttcct 3892887 Score = 40.1 bits (20), Expect = 0.62 Identities = 32/36 (88%) Strand = Plus / Plus Query: 30 gctccgggcggcgctgcagacatggggcttcttcct 65 |||| ||||||| ||||||| |||||||||||||| Sbjct: 3854796 gctcagggcggctctgcagaattggggcttcttcct 3854831
>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0035I03 Length = 153749 Score = 40.1 bits (20), Expect = 0.62 Identities = 32/36 (88%) Strand = Plus / Plus Query: 30 gctccgggcggcgctgcagacatggggcttcttcct 65 |||| ||||||| ||||||| |||||||||||||| Sbjct: 10551 gctcagggcggctctgcagaattggggcttcttcct 10586
>dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0015E04 Length = 152046 Score = 40.1 bits (20), Expect = 0.62 Identities = 32/36 (88%) Strand = Plus / Plus Query: 30 gctccgggcggcgctgcagacatggggcttcttcct 65 |||| ||||||| ||||||| |||||||||||||| Sbjct: 150806 gctcagggcggctctgcagaattggggcttcttcct 150841 Score = 40.1 bits (20), Expect = 0.62 Identities = 32/36 (88%) Strand = Plus / Plus Query: 30 gctccgggcggcgctgcagacatggggcttcttcct 65 |||| ||||||| ||||||| |||||||||||||| Sbjct: 112750 gctcagggcggctctgcagaattggggcttcttcct 112785
>ref|NM_001007561.1| Homo sapiens immunity-related GTPase family, Q (IRGQ), mRNA Length = 2210 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ctccgggcggcgctgcaga 49 ||||||||||||||||||| Sbjct: 676 ctccgggcggcgctgcaga 694
>ref|XM_512718.1| PREDICTED: Pan troglodytes similar to FKSG27 (LOC456095), mRNA Length = 1543 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ctccgggcggcgctgcaga 49 ||||||||||||||||||| Sbjct: 648 ctccgggcggcgctgcaga 666
>gb|BC028792.1| Mus musculus adiponutrin, mRNA (cDNA clone MGC:41626 IMAGE:1265861), complete cds Length = 1915 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 gctccgggcggcgctgcag 48 ||||||||||||||||||| Sbjct: 36 gctccgggcggcgctgcag 18
>ref|NM_054088.1| Mus musculus adiponutrin (Adpn), mRNA Length = 3007 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 gctccgggcggcgctgcag 48 ||||||||||||||||||| Sbjct: 28 gctccgggcggcgctgcag 10
>emb|AJ508984.1|EBE508984 Euphorbia bemarahaensis ITS1, 5.8S rRNA gene and ITS2, specimen voucher Haevermans 99 (P) Length = 642 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 ggccgaaaggctccgggcg 39 ||||||||||||||||||| Sbjct: 393 ggccgaaaggctccgggcg 375
>gb|AF322648.1|AF322648 Homo sapiens FKSG27 (FKSG27) mRNA, complete cds Length = 2210 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ctccgggcggcgctgcaga 49 ||||||||||||||||||| Sbjct: 676 ctccgggcggcgctgcaga 694
>gb|AY037763.1| Mus musculus adiponutrin mRNA, complete cds Length = 3007 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 gctccgggcggcgctgcag 48 ||||||||||||||||||| Sbjct: 28 gctccgggcggcgctgcag 10
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 cgacgaggccgaaaggctc 33 ||||||||||||||||||| Sbjct: 524674 cgacgaggccgaaaggctc 524692
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 38.2 bits (19), Expect = 2.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 21 ggccgaaaggctccgggcggcgc 43 |||||||||| |||||||||||| Sbjct: 2304893 ggccgaaagggtccgggcggcgc 2304915
>gb|AY137296.1| Acridocarpus excelsus isolate 66 clone a internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 696 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 ggccgaaaggctccgggcg 39 ||||||||||||||||||| Sbjct: 399 ggccgaaaggctccgggcg 381
>emb|Z66096.1|HS75G5R H.sapiens CpG island DNA genomic Mse1 fragment, clone 75g5, reverse read cpg75g5.rt1a Length = 301 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccgggcggcgctgcaga 49 ||||||||||||||||||| Sbjct: 231 ctccgggcggcgctgcaga 213
>gb|AC006276.1|AC006276 Homo sapiens chromosome 19, cosmid R28379, complete sequence Length = 38253 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccgggcggcgctgcaga 49 ||||||||||||||||||| Sbjct: 16065 ctccgggcggcgctgcaga 16047
>emb|CR628404.7| Zebrafish DNA sequence from clone CH211-156B18 in linkage group 10, complete sequence Length = 168746 Score = 38.2 bits (19), Expect = 2.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 43 ctgcagacatggggcttcttcct 65 ||||||||||||||||| ||||| Sbjct: 111579 ctgcagacatggggctttttcct 111557
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 38.2 bits (19), Expect = 2.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 21 ggccgaaaggctccgggcggcgc 43 |||||||||| |||||||||||| Sbjct: 2304837 ggccgaaagggtccgggcggcgc 2304859
>emb|AL954364.5|CNS08CCZ Oryza sativa chromosome 12, . BAC OSJNBa0023M16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 156258 Score = 38.2 bits (19), Expect = 2.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 21 ggccgaaaggctccgggcggcgc 43 |||||||||| |||||||||||| Sbjct: 30084 ggccgaaagggtccgggcggcgc 30106
>emb|AL626769.18| Mouse DNA sequence from clone RP23-23A6 on chromosome 15, complete sequence Length = 221087 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 gctccgggcggcgctgcag 48 ||||||||||||||||||| Sbjct: 43383 gctccgggcggcgctgcag 43365
>ref|XM_366361.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein (MG10579.4) partial mRNA Length = 3954 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 28 aggctccgggcggcgctg 45 |||||||||||||||||| Sbjct: 3764 aggctccgggcggcgctg 3781
>gb|AY525079.1| Caenorhabditis elegans serine or cysteine protease inhibitor (SRP-2) mRNA, complete cds Length = 1195 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 ctcacggacgtcgacgag 21 |||||||||||||||||| Sbjct: 627 ctcacggacgtcgacgag 644
>ref|XM_752045.1| Ustilago maydis 521 hypothetical protein (UM00991.1) partial mRNA Length = 2313 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 10 gacgtcgacgaggccgaa 27 |||||||||||||||||| Sbjct: 685 gacgtcgacgaggccgaa 702
>ref|XM_968023.1| PREDICTED: Tribolium castaneum similar to Putative transcription factor SOX-14 (LOC661892), mRNA Length = 939 Score = 36.2 bits (18), Expect = 9.7 Identities = 21/22 (95%) Strand = Plus / Plus Query: 14 tcgacgaggccgaaaggctccg 35 |||| ||||||||||||||||| Sbjct: 299 tcgaggaggccgaaaggctccg 320
>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome Length = 5064019 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 48 gacatggggcttcttcct 65 |||||||||||||||||| Sbjct: 485140 gacatggggcttcttcct 485157
>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29 Length = 310550 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 28 aggctccgggcggcgctg 45 |||||||||||||||||| Sbjct: 306428 aggctccgggcggcgctg 306445
>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29 Length = 321250 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 2 ggctcacggacgtcgacg 19 |||||||||||||||||| Sbjct: 171897 ggctcacggacgtcgacg 171914
>emb|AJ251805.1|BPH251805 Bacteriophage phiYeO3-12 complete genome Length = 39600 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 46 cagacatggggcttcttc 63 |||||||||||||||||| Sbjct: 14092 cagacatggggcttcttc 14109
>emb|BX510923.8| Zebrafish DNA sequence from clone CH211-214J8 in linkage group 5, complete sequence Length = 165838 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 35 gggcggcgctgcagacat 52 |||||||||||||||||| Sbjct: 22532 gggcggcgctgcagacat 22549
>gb|AC157652.3| Mus musculus BAC clone RP24-324J2 from chromosome 10, complete sequence Length = 191096 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 48 gacatggggcttcttcct 65 |||||||||||||||||| Sbjct: 124730 gacatggggcttcttcct 124747
>gb|AE005104.1| Halobacterium sp. NRC-1 section 135 of 170 of the complete genome Length = 13848 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 9 ggacgtcgacgaggccga 26 |||||||||||||||||| Sbjct: 2875 ggacgtcgacgaggccga 2892 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 353,642 Number of Sequences: 3902068 Number of extensions: 353642 Number of successful extensions: 26383 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26071 Number of HSP's gapped (non-prelim): 312 length of query: 65 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 44 effective length of database: 17,151,101,840 effective search space: 754648480960 effective search space used: 754648480960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)