ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart46d10 |
|---|---|
| Clone Library Name | barley_pub |
>HFE_PANTR (P60018) Hereditary hemochromatosis protein homolog precursor| (HLA-H) Length = 348 Score = 32.0 bits (71), Expect = 0.42 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 4/60 (6%) Frame = +1 Query: 112 QPDDFDEF---DSTPYGGG-YDLFVTFGRPLPPSDETCYPCSAPSTSYDAPHYAAEEPSP 279 QP D EF D P G G Y ++T +PP +E Y C D P EPSP Sbjct: 244 QPMDAKEFEPKDVLPNGDGTYQGWITLA--VPPGEEQRYTCQVEHPGLDQPLIVIWEPSP 301
>HFE_HUMAN (Q30201) Hereditary hemochromatosis protein precursor (HLA-H)| Length = 348 Score = 32.0 bits (71), Expect = 0.42 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 4/60 (6%) Frame = +1 Query: 112 QPDDFDEF---DSTPYGGG-YDLFVTFGRPLPPSDETCYPCSAPSTSYDAPHYAAEEPSP 279 QP D EF D P G G Y ++T +PP +E Y C D P EPSP Sbjct: 244 QPMDAKEFEPKDVLPNGDGTYQGWITLA--VPPGEEQRYTCQVEHPGLDQPLIVIWEPSP 301
>BRCA1_RAT (O54952) Breast cancer type 1 susceptibility protein homolog| Length = 1817 Score = 31.2 bits (69), Expect = 0.71 Identities = 24/79 (30%), Positives = 29/79 (36%) Frame = +1 Query: 10 GLLTDVSRPSPHLPADPTTNAAAMGTAYNLRSRDQPDDFDEFDSTPYGGGYDLFVTFGRP 189 GLLT S SP P P + L PD+ E GG G+P Sbjct: 699 GLLTSCS--SPRKPQGPVNPSPERKGIEQLEMCQMPDNNKELGDLVLGGEPS-----GKP 751 Query: 190 LPPSDETCYPCSAPSTSYD 246 PS+E+ P T YD Sbjct: 752 TEPSEESTSVSLVPDTDYD 770
>NIBL_HUMAN (Q96TA1) Niban-like protein (Meg-3)| Length = 733 Score = 30.8 bits (68), Expect = 0.93 Identities = 30/91 (32%), Positives = 34/91 (37%), Gaps = 4/91 (4%) Frame = +1 Query: 10 GLLTDVSRPSPHLPADPTTNAAAMGTAYNLRSRDQPDDFDEFDSTPYGGGYDLF----VT 177 GLL RP PA P N A G + QP E S P L V Sbjct: 642 GLLAQGLRPESPPPAGPLLNGAPAGES------PQPKAAPEASSPPASPLQHLLPGKAVD 695 Query: 178 FGRPLPPSDETCYPCSAPSTSYDAPHYAAEE 270 G P P ET S+PS S+ A H E+ Sbjct: 696 LGPPKPSDQETGEQVSSPS-SHPALHTTTED 725
>TRMD_RALSO (Q8Y0V8) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31)| (M1G-methyltransferase) (tRNA [GM37] methyltransferase) Length = 262 Score = 29.3 bits (64), Expect = 2.7 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%) Frame = +1 Query: 64 TNAAAMGTAYNLRS---RD-QPDDFDEFDSTPYGGGYDLFVTFGRPLPPSDETCYPCSAP 231 T+ AA Y LR+ RD D++ D PYGGG + V +PL + + AP Sbjct: 22 TSRAAKQQVYTLRTWNPRDFTTDNYRTVDDRPYGGGPGM-VMLAKPLEAALDAIREAQAP 80 Query: 232 STSY 243 + S+ Sbjct: 81 APSH 84
>SED1_YEAST (Q01589) Protein SED1 precursor| Length = 338 Score = 28.5 bits (62), Expect = 4.6 Identities = 25/81 (30%), Positives = 28/81 (34%), Gaps = 3/81 (3%) Frame = +1 Query: 37 SPHLPADPTTNAAAMGTAYNLRSRDQPDDFDEFDST---PYGGGYDLFVTFGRPLPPSDE 207 S P D TT A N S + P D T P G F LPPS+ Sbjct: 95 STEAPTDTTTEAPTTALPTNGTSTEAPTDTTTEAPTTGLPTNGTTSAFPPT-TSLPPSNT 153 Query: 208 TCYPCSAPSTSYDAPHYAAEE 270 T P PST Y + E Sbjct: 154 TTTPPYNPSTDYTTDYTVVTE 174
>OXDA_CAEEL (Q19564) Putative D-amino-acid oxidase (EC 1.4.3.3) (DAMOX) (DAO)| (DAAO) Length = 334 Score = 28.1 bits (61), Expect = 6.0 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 4/36 (11%) Frame = +1 Query: 157 GYDLFVT----FGRPLPPSDETCYPCSAPSTSYDAP 252 GYD+ V +G L D+TCYP DAP Sbjct: 176 GYDVIVNCAGLYGGKLAGDDDTCYPIRGVILEVDAP 211
>MILK2_HUMAN (Q8IY33) MICAL-like protein 2| Length = 904 Score = 28.1 bits (61), Expect = 6.0 Identities = 24/78 (30%), Positives = 36/78 (46%) Frame = +1 Query: 46 LPADPTTNAAAMGTAYNLRSRDQPDDFDEFDSTPYGGGYDLFVTFGRPLPPSDETCYPCS 225 +PA P AA T+ ++RS +P + TP G VT P+ S PC+ Sbjct: 300 VPAAPNP-AATSATSVHVRSPARPSE-SRLAPTPTEGKVRPRVTNSSPMGWSSAA--PCT 355 Query: 226 APSTSYDAPHYAAEEPSP 279 A + S+ A +A +P P Sbjct: 356 AAAASHPAVPPSAPDPRP 373
>HFE_RHIUN (Q9GL41) Hereditary hemochromatosis protein homolog precursor| Length = 348 Score = 27.7 bits (60), Expect = 7.9 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Frame = +1 Query: 121 DFDEFDSTPYGGG-YDLFVTFGRPLPPSDETCYPCSAPSTSYDAPHYAAEEPS 276 D + D P G G Y +V +PP +E Y C D P A EPS Sbjct: 250 DAESKDVLPSGDGTYQSWVALA--VPPGEEQRYTCQVEHPGLDQPLTATWEPS 300
>HFE_DICSU (Q9GL42) Hereditary hemochromatosis protein homolog precursor| Length = 348 Score = 27.7 bits (60), Expect = 7.9 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Frame = +1 Query: 121 DFDEFDSTPYGGG-YDLFVTFGRPLPPSDETCYPCSAPSTSYDAPHYAAEEPS 276 D + D P G G Y +V +PP +E Y C D P A EPS Sbjct: 250 DAESKDVLPSGDGTYQSWVALA--VPPGEEQRYTCQVEHPGLDQPLTATWEPS 300
>MAP2_RAT (P15146) Microtubule-associated protein 2 (MAP 2) (MAP-2)| Length = 1861 Score = 27.7 bits (60), Expect = 7.9 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 3/77 (3%) Frame = +1 Query: 55 DPTTNAAAMGTAYNLRSRDQPDDFDEFDSTPYGGGYD---LFVTFGRPLPPSDETCYPCS 225 + T + +G+ Y S + + + D+ D L +P PP+ E Y Sbjct: 580 EDVTRSTGLGSDYYELSDSRGNAQESLDTVSPKNQQDEKELLAKASQPSPPAHEAGYSTL 639 Query: 226 APSTSYDAPHYAAEEPS 276 A S + D P EEPS Sbjct: 640 AQSYTSDHPSELPEEPS 656
>PCD18_HUMAN (Q9HCL0) Protocadherin-18 precursor| Length = 1128 Score = 27.7 bits (60), Expect = 7.9 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%) Frame = +1 Query: 19 TDVSRPSPHLPADPTTNAAAMGT---AYNLRSRDQPDDFDEFDSTPYGGGYDLFVTFGRP 189 T + PH + A G +++ +D P+D D D++ ++ F R Sbjct: 949 TQPQQQHPHQSLEDDAQPADSGEKKKSFSTFGKDSPNDEDTGDTSTSSLLSEMSSVFQRL 1008 Query: 190 LPPSDETCYPCS 225 LPPS +T CS Sbjct: 1009 LPPSLDTYSECS 1020
>VE5B_BPV4 (P08349) Probable protein E5B| Length = 95 Score = 27.7 bits (60), Expect = 7.9 Identities = 16/33 (48%), Positives = 18/33 (54%) Frame = +1 Query: 31 RPSPHLPADPTTNAAAMGTAYNLRSRDQPDDFD 129 RPSPHLP P A + G + LR RD D D Sbjct: 1 RPSPHLPETP--GAGSRGRS-RLRDRDHGHDHD 30 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.313 0.135 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,339,242 Number of Sequences: 219361 Number of extensions: 355126 Number of successful extensions: 980 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 956 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 978 length of database: 80,573,946 effective HSP length: 69 effective length of database: 65,438,037 effective search space used: 1570512888 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)
