ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart46d08 |
|---|---|
| Clone Library Name | barley_pub |
>DHB4_HUMAN (P51659) Peroxisomal multifunctional enzyme type 2 (MFE-2)| (D-bifunctional protein) (DBP) (17-beta-hydroxysteroid dehydrogenase 4) (17-beta-HSD 4) [Includes: D-3-hydroxyacyl-CoA dehydratase (EC 4.2.1.107) (3-alpha,7-alpha,12-alpha-trihydroxy-5 Length = 735 Score = 100 bits (250), Expect = 2e-21 Identities = 57/180 (31%), Positives = 93/180 (51%) Frame = +1 Query: 61 ALAYKFPEVSFAYDERDVALYALGVGACGADAVDDKELHLVHHRDGQRHIKALPTFVSLF 240 A+ K P S+AY E + +YALGVGA D K+L ++ +G LPTF + Sbjct: 326 AIGQKLPPFSYAYTELEAIMYALGVGA---SIKDPKDLKFIY--EGSSDFSCLPTFGVII 380 Query: 241 PNKNSNGRGIVNVPGIHFDASLLLHGQQYIEIYKPIPSCASVVNKVKVAGLHDKGKATIL 420 K+ G G+ +PG+ + + +LHG+QY+E+YKP+P + + VA + DKG ++ Sbjct: 381 GQKSMMGGGLAEIPGLSINFAKVLHGEQYLELYKPLPRAGKLKCEAVVADVLDKGSGVVI 440 Query: 421 EIETTTSLKDSGEVLCMNRSTIFLRGAGGFSDSSRPYSYTTYPANQISRISIPNSAPSAV 600 ++ + E++C N+ ++FL G+GGF ++IPN P AV Sbjct: 441 IMDVYS--YSEKELICHNQFSLFLVGSGGFGGKRTSDKVKV-------AVAIPNRPPDAV 491
>DHB4_MOUSE (P51660) Peroxisomal multifunctional enzyme type 2 (MFE-2)| (D-bifunctional protein) (DBP) (17-beta-hydroxysteroid dehydrogenase 4) (17-beta-HSD 4) [Includes: D-3-hydroxyacyl-CoA dehydratase (EC 4.2.1.107) (3-alpha,7-alpha,12-alpha-trihydroxy-5 Length = 734 Score = 95.9 bits (237), Expect = 8e-20 Identities = 54/180 (30%), Positives = 92/180 (51%) Frame = +1 Query: 61 ALAYKFPEVSFAYDERDVALYALGVGACGADAVDDKELHLVHHRDGQRHIKALPTFVSLF 240 A+ +K P S +Y E +YALGVGA + K+L V+ +G LPTF + Sbjct: 325 AVGHKLPSFSSSYTELQSIMYALGVGA---SVKNPKDLKFVY--EGSADFSCLPTFGVIV 379 Query: 241 PNKNSNGRGIVNVPGIHFDASLLLHGQQYIEIYKPIPSCASVVNKVKVAGLHDKGKATIL 420 K+ G+ VPG+ F+ + LHG+QY+E+YKP+P + + +A + DKG ++ Sbjct: 380 AQKSMMNGGLAEVPGLSFNFAKALHGEQYLELYKPLPRSGELKCEAVIADILDKGSGVVI 439 Query: 421 EIETTTSLKDSGEVLCMNRSTIFLRGAGGFSDSSRPYSYTTYPANQISRISIPNSAPSAV 600 ++ + E++C N+ ++F+ G+GGF + +++PN P AV Sbjct: 440 VMDVYS--YSGKELICYNQFSVFVVGSGGFGGKRTSEKLK-------AAVAVPNRPPDAV 490
>DHB4_RAT (P97852) Peroxisomal multifunctional enzyme type 2 (MFE-2)| (D-bifunctional protein) (DBP) (17-beta-hydroxysteroid dehydrogenase 4) (17-beta-HSD 4) [Includes: D-3-hydroxyacyl-CoA dehydratase (EC 4.2.1.107) (3-alpha,7-alpha,12-alpha-trihydroxy-5-b Length = 734 Score = 90.5 bits (223), Expect = 3e-18 Identities = 51/179 (28%), Positives = 91/179 (50%) Frame = +1 Query: 64 LAYKFPEVSFAYDERDVALYALGVGACGADAVDDKELHLVHHRDGQRHIKALPTFVSLFP 243 + +K P S +Y E +YALGVGA + K+L V+ +G LPTF + Sbjct: 326 VGHKLPSFSSSYTELQCIMYALGVGA---SVKNPKDLKFVY--EGSADFSCLPTFGVIVA 380 Query: 244 NKNSNGRGIVNVPGIHFDASLLLHGQQYIEIYKPIPSCASVVNKVKVAGLHDKGKATILE 423 K+ G+ VPG+ + + +LHG+QY+E+YKP+P + + +A + DKG ++ Sbjct: 381 QKSLMSGGLAEVPGLSINFAKVLHGEQYLELYKPLPRSGELKCEAVIADILDKGSGIVIV 440 Query: 424 IETTTSLKDSGEVLCMNRSTIFLRGAGGFSDSSRPYSYTTYPANQISRISIPNSAPSAV 600 ++ + E++C N+ ++F+ G+GGF + +++P+ P AV Sbjct: 441 MDVYS--YSGKELICYNQFSVFVVGSGGFGGKRTSEKLK-------AAVAVPSRPPDAV 490
>FOX2_NEUCR (Q01373) Peroxisomal hydratase-dehydrogenase-epimerase (HDE)| (Multifunctional beta-oxidation protein) (MFP) [Includes: 2-enoyl-CoA hydratase (EC 4.2.1.-); D-3-hydroxyacyl CoA dehydrogenase (EC 1.1.1.-)] Length = 894 Score = 84.7 bits (208), Expect = 2e-16 Identities = 52/147 (35%), Positives = 79/147 (53%), Gaps = 1/147 (0%) Frame = +1 Query: 91 FAYDERDVALYALGVGACGADAVDDKELHLVHHRDGQRHIKALPTFVSLFPNKNSNGRGI 270 + + ERDV LY LG+GA K + + +G + +PTF + P N+ Sbjct: 628 YTFTERDVCLYNLGIGA--------KRTDIKYIFEGNEDFEVVPTF-GVIPPFNTEMPFS 678 Query: 271 VNVPGIHFDASLLLHGQQYIEIYK-PIPSCASVVNKVKVAGLHDKGKATILEIETTTSLK 447 + +F +LLHG+QY+E+ K PIP+ +V+K K+ + DKG A I++ TT Sbjct: 679 FDDIVPNFSPMMLLHGEQYLEVRKYPIPTSGRLVSKGKLLEVVDKGSAAIVKQGITTFNA 738 Query: 448 DSGEVLCMNRSTIFLRGAGGFSDSSRP 528 ++GE L N T+FLRG GGF +P Sbjct: 739 ETGEELFYNEMTVFLRGCGGFGGQKKP 765
>FOX2_CANTR (P22414) Peroxisomal hydratase-dehydrogenase-epimerase (HDE)| (Multifunctional beta-oxidation protein) (MFP) [Includes: 2-enoyl-CoA hydratase (EC 4.2.1.-); D-3-hydroxyacyl CoA dehydrogenase (EC 1.1.1.-)] Length = 906 Score = 50.1 bits (118), Expect = 5e-06 Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 1/166 (0%) Frame = +1 Query: 97 YDERDVALYALGVGACGADAVDDKELHLVHHRDGQRHIKALPTFVSLFPNKNSNGRGIVN 276 +D+RDV LY + +GA K+L V+ D + +PTF L + + Sbjct: 635 FDDRDVILYNIALGAT------TKQLKYVYENDSD--FQVIPTFGHLITFNSGKSQNSFA 686 Query: 277 VPGIHFDASLLLHGQQYIEIYK-PIPSCASVVNKVKVAGLHDKGKATILEIETTTSLKDS 453 +F+ LLLHG+ Y++++ P P+ + + KG ++ + + S Sbjct: 687 KLLRNFNPMLLLHGEHYLKVHSWPPPTEGEIKTTFEPIATTPKGTNVVIVHGSKSVDNKS 746 Query: 454 GEVLCMNRSTIFLRGAGGFSDSSRPYSYTTYPANQISRISIPNSAP 591 GE++ N +T F+R + Y PA ++ P AP Sbjct: 747 GELIYSNEATYFIRNC-----QADNKVYADRPAFATNQFLAPKRAP 787
>FOX2_YEAST (Q02207) Peroxisomal hydratase-dehydrogenase-epimerase (HDE)| (Multifunctional beta-oxidation protein) (MFP) [Includes: 2-enoyl-CoA hydratase (EC 4.2.1.-); D-3-hydroxyacyl CoA dehydrogenase (EC 1.1.1.-)] Length = 900 Score = 46.2 bits (108), Expect = 7e-05 Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 2/139 (1%) Frame = +1 Query: 91 FAYDERDVALYALGVGACGADAVDDKELHLVHHRDGQRHIKALPTFVSLFPNKNSNGRGI 270 F Y +D LY LG+G KEL + D + LPTF ++ P + Sbjct: 624 FKYTTKDCILYNLGLGCTS------KELKYTYENDPD--FQVLPTF-AVIPFMQATATLA 674 Query: 271 VNVPGIHFDASLLLHGQQYIEIYKP-IPSCASVVNKVKVAGLHDK-GKATILEIETTTSL 444 ++ +F+ ++LLHG+QY ++ P +PS ++ K + DK GKA ++ T Sbjct: 675 MDNLVDNFNYAMLLHGEQYFKLCTPTMPSNGTLKTLAKPLQVLDKNGKAALVVGGFETYD 734 Query: 445 KDSGEVLCMNRSTIFLRGA 501 + +++ N + F+RGA Sbjct: 735 IKTKKLIAYNEGSFFIRGA 753
>HEM3_STAES (Q8CNY8) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 308 Score = 31.2 bits (69), Expect = 2.4 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Frame = +1 Query: 97 YDERDVALYALGVGACGADA-VDDKE----LHLVHHRDGQRHIKALPTFVS 234 Y +RD+ L A+G GA G + DDKE L VH+ D + + A TF+S Sbjct: 185 YLDRDILLPAIGQGALGIECRSDDKELLDLLSKVHNHDVAQCVTAERTFLS 235
>HEM3_STAEQ (Q5HNN3) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 308 Score = 31.2 bits (69), Expect = 2.4 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Frame = +1 Query: 97 YDERDVALYALGVGACGADA-VDDKE----LHLVHHRDGQRHIKALPTFVS 234 Y +RD+ L A+G GA G + DDKE L VH+ D + + A TF+S Sbjct: 185 YLDRDILLPAIGQGALGIECRSDDKELLDLLSKVHNHDVAQCVTAERTFLS 235
>CRYS_DICDI (P21837) Crystal protein precursor| Length = 550 Score = 30.8 bits (68), Expect = 3.2 Identities = 17/55 (30%), Positives = 29/55 (52%) Frame = -2 Query: 525 PGRVRKTSSTTQENSTPVHT*HFTRILEAGRSFDLENSCFPFVVQTSYLNLVYNT 361 PGR S + Q N +P++ + ++L G SF+ +C V + L +V+NT Sbjct: 403 PGRYH-VSKSAQANESPIYHYQYKQVLSGGHSFE---ACEGLVCHGTELPMVFNT 453
>HEM3_BACSK (Q5WEP5) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 311 Score = 30.0 bits (66), Expect = 5.4 Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 6/141 (4%) Frame = +1 Query: 82 EVSFAYDERDVALYALGVGACGADA-VDDKE----LHLVHHRDGQRHIKALPTFVSLFPN 246 +V Y ++DV L A+G GA G + VDD E L +HH + + + A F+ Sbjct: 180 DVITEYLDKDVCLPAIGQGALGLECRVDDVETTELLAKLHHEETGKAVLAERAFL----- 234 Query: 247 KNSNGRGIVNVPGIHFDASLLLHGQQYIEIYKPIPSCASVVNKVKVAGLHDK-GKATILE 423 K NG V + G A++L G ++ P +++ + K + D+ GK E Sbjct: 235 KEMNGGCQVPIGGY---ATVLEDGAVFLTGLVGSPDGKTILKEGKCGMVADELGK----E 287 Query: 424 IETTTSLKDSGEVLCMNRSTI 486 + + + + +G +L RS + Sbjct: 288 VSSLLTAQGAGAILEKVRSEL 308
>FOLD_SALTY (P58688) FolD bifunctional protein [Includes:| Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)] Length = 287 Score = 29.6 bits (65), Expect = 7.0 Identities = 17/52 (32%), Positives = 24/52 (46%) Frame = -3 Query: 509 KPPAPRKKIVLLFIHNTSPESLRLVVVSISRIVAFPLSCKPATLTLFTTLAH 354 +P PR + LL +N L VV+ S IV P+S + TT+ H Sbjct: 138 RPCTPRGIVTLLERYNIDTYGLNAVVIGASNIVGRPMSMELLLAGCTTTVTH 189
>FOLD_SALTI (Q60006) FolD bifunctional protein [Includes:| Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)] Length = 287 Score = 29.6 bits (65), Expect = 7.0 Identities = 17/52 (32%), Positives = 24/52 (46%) Frame = -3 Query: 509 KPPAPRKKIVLLFIHNTSPESLRLVVVSISRIVAFPLSCKPATLTLFTTLAH 354 +P PR + LL +N L VV+ S IV P+S + TT+ H Sbjct: 138 RPCTPRGIVTLLERYNIDTYGLNAVVIGASNIVGRPMSMELLLAGCTTTVTH 189
>FOLD_ECOLI (P24186) FolD bifunctional protein [Includes:| Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)] Length = 287 Score = 29.3 bits (64), Expect = 9.2 Identities = 17/52 (32%), Positives = 24/52 (46%) Frame = -3 Query: 509 KPPAPRKKIVLLFIHNTSPESLRLVVVSISRIVAFPLSCKPATLTLFTTLAH 354 +P PR + LL +N L VV+ S IV P+S + TT+ H Sbjct: 138 RPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTH 189 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,310,508 Number of Sequences: 219361 Number of extensions: 1362975 Number of successful extensions: 4062 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3974 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4053 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
