ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart46d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK071684.1| Oryza sativa (japonica cultivar-group) cDNA clon... 527 e-146
2gb|AY104299.1| Zea mays PCO075569 mRNA sequence 367 3e-98
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
4dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
5dbj|AB224367.1| Aspergillus oryzae cDNA, contig sequence: AoEST1212 44 0.53
6dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 44 0.53
7gb|AC012396.7|AC012396 Arabidopsis thaliana chromosome 1 BAC T9L... 42 2.1
8gb|AY971525.1| Myxobacter sp. HK1 putative Ser/Thr kinase gene, ... 42 2.1
9dbj|AB019230.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 2.1
10ref|XM_367786.1| Magnaporthe grisea 70-15 chromosome III hypothe... 40 8.2
11emb|AL645585.11| Human DNA sequence from clone RP13-520K9 on chr... 40 8.2
12emb|AL391280.15| Human DNA sequence from clone RP13-128O4 on chr... 40 8.2
13gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 8.2
14emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete ... 40 8.2
15emb|AJ131817.1|SCO131817 Streptomyces coelicolor wdpA gene 40 8.2
16gb|AC078958.30| Homo sapiens X BAC RP11-609C15 (Roswell Park Can... 40 8.2
17gb|CP000249.1| Frankia sp. CcI3, complete genome 40 8.2
18emb|BX324229.7| Zebrafish DNA sequence from clone RP71-10D19, co... 40 8.2
19gb|AC093179.1| Homo sapiens chromosome 3 clone RP11-983J7 map 3p... 40 8.2
20gb|DQ368598.1| Sus scrofa p53-regulated receptor for death and l... 40 8.2
21gb|AY787762.1| Streptomyces filamentosus strain NRRL 11379 dapto... 40 8.2
22gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 8.2
23gb|AC090937.2| Homo sapiens chromosome 3 clone RP11-316A10 map 3... 40 8.2
24gb|AC012462.5| Homo sapiens BAC clone RP11-566P21 from 2, comple... 40 8.2
25dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 8.2
26gb|AC114632.9| Mus musculus chromosome 5, clone RP24-114E20, com... 40 8.2
27emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 8.2
28gb|AF092866.1|AF092866 Thermus filiformis strain Tok6A1 NAD-depe... 40 8.2
29gb|AF061572.1|AF061572 Thermus filiformis thermostable DNA ligas... 40 8.2
30emb|CT573090.2| RP43-052E01, complete sequence 40 8.2
31gb|AC134897.4| Mus musculus BAC clone RP23-459D9 from 6, complet... 40 8.2
32gb|AC116952.4| Mus musculus BAC clone RP23-104A7 from 14, comple... 40 8.2
33gb|AC153632.2| Mus musculus 6 BAC RP23-450O1 (Roswell Park Cance... 40 8.2
34emb|AL591865.8| Mouse DNA sequence from clone RP23-14G21 on chro... 40 8.2

>dbj|AK071684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108B15, full
           insert sequence
          Length = 1256

 Score =  527 bits (266), Expect = e-146
 Identities = 496/573 (86%)
 Strand = Plus / Plus

                                                                       
Query: 32  cacccgccgcgtccgtcgacccggacgtcgcgctcgcctacaagttccccgaggtctcct 91
           |||| |||||| |||||||||| || | || |||| || |||  ||||||||||||||||
Sbjct: 109 caccagccgcggccgtcgaccccgaggccgtgctctcccacagcttccccgaggtctcct 168

                                                                       
Query: 92  tcgcctacgacgagagggacgtggcgctgtacgcgctcggcgtgggggcctgcggcgcgg 151
           ||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||
Sbjct: 169 tcgcctacgacgagagggatgtggcgctgtacgcgctcggagtcggggcgtgcggcgcgg 228

                                                                       
Query: 152 acgccgtcgacgacaaggagctccacctcgtgcaccacagggacgggcagcgccacatca 211
           ||||| ||||||| |||||||| ||||| ||| ||||||||||||| ||||  |||||||
Sbjct: 229 acgccatcgacgagaaggagctgcacctggtgtaccacagggacggccagccacacatca 288

                                                                       
Query: 212 aggcgcttcctacctttgtttctttatttcctaacaagaacagcaatgggcgtggaattg 271
           |||| |||||||| |||| |||||||||||||  ||||||||||||||||| ||||||||
Sbjct: 289 aggctcttcctacttttgcttctttatttcctttcaagaacagcaatgggcttggaattg 348

                                                                       
Query: 272 ttaatgtgcctggcattcacttcgatgcaagccttctattgcacggtcaacaatacatag 331
           || ||||||||||| || |||| || ||||||||||||||||| |||||||| |||||||
Sbjct: 349 ttgatgtgcctggccttaactttgacgcaagccttctattgcatggtcaacattacatag 408

                                                                       
Query: 332 agatctacaagccaatcccttcatgtgccagtgttgtaaacaaggttaaggtagctggtt 391
           |||| ||||||||||| | |||  |||||| |||||||||||||   ||| ||||||| |
Sbjct: 409 agatatacaagccaattcattcgcgtgccaatgttgtaaacaagaccaagatagctggct 468

                                                                       
Query: 392 tgcacgacaaagggaaagcaactattctcgagatcgaaactacgaccagcctcaaggatt 451
           |||| ||||||||||||||||||||||| ||||| || ||||| |||    |||| ||||
Sbjct: 469 tgcatgacaaagggaaagcaactattcttgagattgagactacaacccatgtcaaagatt 528

                                                                       
Query: 452 ctggtgaagtgttatgtatgaacaggagtactattttcttgcgtggtgctggaggttttt 511
           |||||||||| ||||||||||||||||||||||| | | |||||||||||||||| ||||
Sbjct: 529 ctggtgaagttttatgtatgaacaggagtactatctacctgcgtggtgctggaggctttt 588

                                                                       
Query: 512 ctgactcttcccggccatactcgtatacgacttatcctgccaaccagatttctcgcattt 571
           ||||  |||| || |||||||| ||| | | ||||||  | |||||| ||||||||||||
Sbjct: 589 ctgatccttcacgaccatactcctatgctagttatcccactaaccaggtttctcgcattt 648

                                            
Query: 572 ctattccnaattccgcaccttctgcagtgtatg 604
           ||||||| ||||| || ||||||||||| ||||
Sbjct: 649 ctattccaaattcagcgccttctgcagtatatg 681



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>gb|AY104299.1| Zea mays PCO075569 mRNA sequence
          Length = 2139

 Score =  367 bits (185), Expect = 3e-98
 Identities = 323/369 (87%)
 Strand = Plus / Plus

                                                                       
Query: 33  acccgccgcgtccgtcgacccggacgtcgcgctcgcctacaagttccccgaggtctcctt 92
           |||||||||| |||| |||||    |||| ||||||| || ||||||||||||| || ||
Sbjct: 59  acccgccgcgcccgtggaccccatggtcgtgctcgcccacgagttccccgaggtgtcatt 118

                                                                       
Query: 93  cgcctacgacgagagggacgtggcgctgtacgcgctcggcgtgggggcctgcggcgcgga 152
           || ||||||||||||||| || ||| ||||||||||||| || || ||||||||||  ||
Sbjct: 119 cgactacgacgagagggatgtagcgttgtacgcgctcggggttggtgcctgcggcgatga 178

                                                                       
Query: 153 cgccgtcgacgacaaggagctccacctcgtgcaccacagggacgggcagcgccacatcaa 212
           |||||||||||| |||||||| ||| ||||| |||||||||| |||||||  ||||| ||
Sbjct: 179 cgccgtcgacgagaaggagcttcacttcgtgtaccacagggatgggcagccacacattaa 238

                                                                       
Query: 213 ggcgcttcctacctttgtttctttatttcctaacaagaacagcaatgggcgtggaattgt 272
           | | |||||||| ||||||||||||||||| ||||||||||||||||||| |||| ||||
Sbjct: 239 gacccttcctacttttgtttctttatttcccaacaagaacagcaatgggcttggatttgt 298

                                                                       
Query: 273 taatgtgcctggcattcacttcgatgcaagccttctattgcacggtcaacaatacataga 332
           | ||||||||||| || |||| ||||||||||||||| |||| |||||||||||||||||
Sbjct: 299 tgatgtgcctggccttaactttgatgcaagccttctactgcatggtcaacaatacataga 358

                                                                       
Query: 333 gatctacaagccaatcccttcatgtgccagtgttgtaaacaaggttaaggtagctggttt 392
           |||||| | |||||||||||| | ||||||||||||||||| |||||| |||||||||||
Sbjct: 359 gatctataggccaatcccttcgtatgccagtgttgtaaacagggttaaagtagctggttt 418

                    
Query: 393 gcacgacaa 401
           |||||||||
Sbjct: 419 gcacgacaa 427



 Score =  188 bits (95), Expect = 1e-44
 Identities = 172/198 (86%)
 Strand = Plus / Plus

                                                                        
Query: 402  agggaaagcaactattctcgagatcgaaactacgaccagcctcaaggattctggtgaagt 461
            |||||||||||||||||| ||| |||||||||| || |||||||| || || || ||| |
Sbjct: 1395 agggaaagcaactattcttgagctcgaaactaccacaagcctcaaagagtcaggggaaat 1454

                                                                        
Query: 462  gttatgtatgaacaggagtactattttcttgcgtggtgctggaggtttttctgactcttc 521
             ||||| ||||||||||||||||| | |||||||||||||||||| ||||| ||||||||
Sbjct: 1455 tttatgcatgaacaggagtactatctacttgcgtggtgctggagggttttcagactcttc 1514

                                                                        
Query: 522  ccggccatactcgtatacgacttatcctgccaaccagatttctcgcatttctattccnaa 581
             ||||||||||| ||| | || |||||||| || ||  ||||||||||||||||||| ||
Sbjct: 1515 acggccatactcatatgctacctatcctgctaatcaagtttctcgcatttctattccaaa 1574

                              
Query: 582  ttccgcaccttctgcagt 599
            ||| ||||||||||||||
Sbjct: 1575 ttcggcaccttctgcagt 1592



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  121 bits (61), Expect = 3e-24
 Identities = 97/109 (88%)
 Strand = Plus / Minus

                                                                            
Query: 106      agggacgtggcgctgtacgcgctcggcgtgggggcctgcggcgcggacgccgtcgacgac 165
                ||||| |||||||||||||||||||| || ||||| ||||||||||||||| ||||||| 
Sbjct: 21241140 agggatgtggcgctgtacgcgctcggagtcggggcgtgcggcgcggacgccatcgacgag 21241081

                                                                 
Query: 166      aaggagctccacctcgtgcaccacagggacgggcagcgccacatcaagg 214
                |||||||| ||||| ||| ||||||||||||| ||||  ||||||||||
Sbjct: 21241080 aaggagctgcacctggtgtaccacagggacggccagccacacatcaagg 21241032



 Score =  103 bits (52), Expect = 7e-19
 Identities = 111/131 (84%)
 Strand = Plus / Minus

                                                                            
Query: 474      caggagtactattttcttgcgtggtgctggaggtttttctgactcttcccggccatactc 533
                |||||||||||| | | |||||||||||||||| ||||||||  |||| || ||||||||
Sbjct: 21238284 caggagtactatctacctgcgtggtgctggaggcttttctgatccttcacgaccatactc 21238225

                                                                            
Query: 534      gtatacgacttatcctgccaaccagatttctcgcatttctattccnaattccgcaccttc 593
                 ||| | | ||||||  | |||||| ||||||||||||||||||| ||||| || |||||
Sbjct: 21238224 ctatgctagttatcccactaaccaggtttctcgcatttctattccaaattcagcgccttc 21238165

                           
Query: 594      tgcagtgtatg 604
                |||||| ||||
Sbjct: 21238164 tgcagtatatg 21238154



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                            
Query: 212      aggcgcttcctacctttgtttctttatttcctaacaagaacagcaatgggcgtggaattg 271
                |||| |||||||| |||| |||||||||||||  ||||||||||||||||| ||||||||
Sbjct: 21240153 aggctcttcctacttttgcttctttatttcctttcaagaacagcaatgggcttggaattg 21240094

                              
Query: 272      ttaatgtgcctggc 285
                || |||||||||||
Sbjct: 21240093 ttgatgtgcctggc 21240080



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                                  
Query: 298      gcaagccttctattgcacggtcaacaatacatagagatctacaagccaat 347
                ||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 21239883 gcaagccttctattgcatggtcaacattacatagagatatacaagccaat 21239834



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                            
Query: 402      agggaaagcaactattctcgagatcgaaactacgaccagcctcaaggattctggtgaagt 461
                |||||||||||||||||| ||||| || ||||| |||    |||| ||||||||||||||
Sbjct: 21238443 agggaaagcaactattcttgagattgagactacaacccatgtcaaagattctggtgaagt 21238384

                                
Query: 462      gttatgtatgaacagg 477
                 |||||||||||||||
Sbjct: 21238383 tttatgtatgaacagg 21238368



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 83       aggtctccttcgcctacgacgagagg 108
                ||||||||||||||||||||||||||
Sbjct: 21241280 aggtctccttcgcctacgacgagagg 21241255



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>dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone: P0705E11
          Length = 140729

 Score =  121 bits (61), Expect = 3e-24
 Identities = 97/109 (88%)
 Strand = Plus / Minus

                                                                          
Query: 106    agggacgtggcgctgtacgcgctcggcgtgggggcctgcggcgcggacgccgtcgacgac 165
              ||||| |||||||||||||||||||| || ||||| ||||||||||||||| ||||||| 
Sbjct: 111897 agggatgtggcgctgtacgcgctcggagtcggggcgtgcggcgcggacgccatcgacgag 111838

                                                               
Query: 166    aaggagctccacctcgtgcaccacagggacgggcagcgccacatcaagg 214
              |||||||| ||||| ||| ||||||||||||| ||||  ||||||||||
Sbjct: 111837 aaggagctgcacctggtgtaccacagggacggccagccacacatcaagg 111789



 Score =  103 bits (52), Expect = 7e-19
 Identities = 111/131 (84%)
 Strand = Plus / Minus

                                                                          
Query: 474    caggagtactattttcttgcgtggtgctggaggtttttctgactcttcccggccatactc 533
              |||||||||||| | | |||||||||||||||| ||||||||  |||| || ||||||||
Sbjct: 109041 caggagtactatctacctgcgtggtgctggaggcttttctgatccttcacgaccatactc 108982

                                                                          
Query: 534    gtatacgacttatcctgccaaccagatttctcgcatttctattccnaattccgcaccttc 593
               ||| | | ||||||  | |||||| ||||||||||||||||||| ||||| || |||||
Sbjct: 108981 ctatgctagttatcccactaaccaggtttctcgcatttctattccaaattcagcgccttc 108922

                         
Query: 594    tgcagtgtatg 604
              |||||| ||||
Sbjct: 108921 tgcagtatatg 108911



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                          
Query: 212    aggcgcttcctacctttgtttctttatttcctaacaagaacagcaatgggcgtggaattg 271
              |||| |||||||| |||| |||||||||||||  ||||||||||||||||| ||||||||
Sbjct: 110910 aggctcttcctacttttgcttctttatttcctttcaagaacagcaatgggcttggaattg 110851

                            
Query: 272    ttaatgtgcctggc 285
              || |||||||||||
Sbjct: 110850 ttgatgtgcctggc 110837



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                                
Query: 298    gcaagccttctattgcacggtcaacaatacatagagatctacaagccaat 347
              ||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 110640 gcaagccttctattgcatggtcaacattacatagagatatacaagccaat 110591



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                          
Query: 402    agggaaagcaactattctcgagatcgaaactacgaccagcctcaaggattctggtgaagt 461
              |||||||||||||||||| ||||| || ||||| |||    |||| ||||||||||||||
Sbjct: 109200 agggaaagcaactattcttgagattgagactacaacccatgtcaaagattctggtgaagt 109141

                              
Query: 462    gttatgtatgaacagg 477
               |||||||||||||||
Sbjct: 109140 tttatgtatgaacagg 109125



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 83     aggtctccttcgcctacgacgagagg 108
              ||||||||||||||||||||||||||
Sbjct: 112037 aggtctccttcgcctacgacgagagg 112012



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>dbj|AB224367.1| Aspergillus oryzae cDNA, contig sequence: AoEST1212
          Length = 620

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 4   ggaggagcggccatggcgacga 25
           ||||||||||||||||||||||
Sbjct: 403 ggaggagcggccatggcgacga 382



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>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 4       ggaggagcggccatggcgacga 25
               ||||||||||||||||||||||
Sbjct: 2282037 ggaggagcggccatggcgacga 2282058



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>gb|AC012396.7|AC012396 Arabidopsis thaliana chromosome 1 BAC T9L24 genomic sequence, complete
             sequence
          Length = 90459

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 322   caatacatagagatctacaag 342
             |||||||||||||||||||||
Sbjct: 77657 caatacatagagatctacaag 77677



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>gb|AY971525.1| Myxobacter sp. HK1 putative Ser/Thr kinase gene, complete cds
          Length = 1062

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 118 ctgtacgcgctcggcgtgggggcct 142
           ||||||||||||||||||| |||||
Sbjct: 727 ctgtacgcgctcggcgtggtggcct 751



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>dbj|AB019230.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MEB5
          Length = 74968

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 228   tgtttctttatttcctaacaa 248
             |||||||||||||||||||||
Sbjct: 70214 tgtttctttatttcctaacaa 70234



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>ref|XM_367786.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein
           (MG07697.4) partial mRNA
          Length = 642

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 68  cctacaagttccccgaggtctccttcgcctacgacg 103
           |||||||| |||||||| || | |||||||||||||
Sbjct: 17  cctacaagctccccgagctcccattcgcctacgacg 52



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>emb|AL645585.11| Human DNA sequence from clone RP13-520K9 on chromosome X Contains a
             novel gene (FLJ35782), complete sequence
          Length = 55870

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   cctttgtttctttatttcct 243
             ||||||||||||||||||||
Sbjct: 43710 cctttgtttctttatttcct 43691



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>emb|AL391280.15| Human DNA sequence from clone RP13-128O4 on chromosome X Contains the 3'
              end of the gene for a novel protein similar to zizimin1
              (FLJ32122), the IL13RA1 gene for interleukin 13 receptor,
              alpha 1 (NR4, IL-13RA, IL-13Ra), a novel pseudogene and a
              CpG island, complete sequence
          Length = 153026

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 319    caacaatacatagagatcta 338
              ||||||||||||||||||||
Sbjct: 145024 caacaatacatagagatcta 145043



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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     gggcacccgccgcgtccgtc 48
              ||||||||||||||||||||
Sbjct: 920188 gggcacccgccgcgtccgtc 920169



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>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29
          Length = 303550

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    cggccatggcgacgaacggg 30
             ||||||||||||||||||||
Sbjct: 31448 cggccatggcgacgaacggg 31467



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>emb|AJ131817.1|SCO131817 Streptomyces coelicolor wdpA gene
          Length = 4910

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 11   cggccatggcgacgaacggg 30
            ||||||||||||||||||||
Sbjct: 4846 cggccatggcgacgaacggg 4865



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>gb|AC078958.30| Homo sapiens X BAC RP11-609C15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 187547

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 454   ggtgaagtgttatgtatgaa 473
             ||||||||||||||||||||
Sbjct: 14689 ggtgaagtgttatgtatgaa 14708



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 34      cccgccgcgtccgtcgacccggacgtcg 61
               ||||||||| ||| ||||||||||||||
Sbjct: 1149431 cccgccgcgcccgacgacccggacgtcg 1149458



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>emb|BX324229.7| Zebrafish DNA sequence from clone RP71-10D19, complete sequence
          Length = 72241

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 228  tgtttctttatttcctaaca 247
            ||||||||||||||||||||
Sbjct: 4783 tgtttctttatttcctaaca 4802



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>gb|AC093179.1| Homo sapiens chromosome 3 clone RP11-983J7 map 3p, complete sequence
          Length = 181321

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     ccccgaggtctccttcgcct 97
              ||||||||||||||||||||
Sbjct: 173489 ccccgaggtctccttcgcct 173508



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>gb|DQ368598.1| Sus scrofa p53-regulated receptor for death and life mRNA, complete
            cds
          Length = 3092

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 107  gggacgtggcgctgtacgcg 126
            ||||||||||||||||||||
Sbjct: 1166 gggacgtggcgctgtacgcg 1185



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>gb|AY787762.1| Streptomyces filamentosus strain NRRL 11379 daptomycin biosynthetic gene
              cluster, partial sequence
          Length = 127559

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     gtcgacccggacgtcgcgct 65
              ||||||||||||||||||||
Sbjct: 109385 gtcgacccggacgtcgcgct 109366



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 132     cgtgggggcctgcggcgcgg 151
               ||||||||||||||||||||
Sbjct: 1059494 cgtgggggcctgcggcgcgg 1059475



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>gb|AC090937.2| Homo sapiens chromosome 3 clone RP11-316A10 map 3p, complete sequence
          Length = 160702

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    ccccgaggtctccttcgcct 97
             ||||||||||||||||||||
Sbjct: 44751 ccccgaggtctccttcgcct 44732



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>gb|AC012462.5| Homo sapiens BAC clone RP11-566P21 from 2, complete sequence
          Length = 143947

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 269    ttgttaatgtgcctggcatt 288
              ||||||||||||||||||||
Sbjct: 111069 ttgttaatgtgcctggcatt 111050



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 192     ggacgggcagcgccacatca 211
               ||||||||||||||||||||
Sbjct: 2422668 ggacgggcagcgccacatca 2422649



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>gb|AC114632.9| Mus musculus chromosome 5, clone RP24-114E20, complete sequence
          Length = 160308

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   cctttgtttctttatttcct 243
             ||||||||||||||||||||
Sbjct: 60789 cctttgtttctttatttcct 60770



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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    ggcgctgtacgcgctcggcg 133
              ||||||||||||||||||||
Sbjct: 795996 ggcgctgtacgcgctcggcg 795977



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>gb|AF092866.1|AF092866 Thermus filiformis strain Tok6A1 NAD-dependent DNA ligase gene,
           partial cds
          Length = 1611

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 59  tcgcgctcgcctacaagttccccg 82
           |||| |||||||||||||||||||
Sbjct: 782 tcgccctcgcctacaagttccccg 805



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>gb|AF061572.1|AF061572 Thermus filiformis thermostable DNA ligase gene, complete cds
          Length = 2121

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 59   tcgcgctcgcctacaagttccccg 82
            |||| |||||||||||||||||||
Sbjct: 1014 tcgccctcgcctacaagttccccg 1037



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>emb|CT573090.2| RP43-052E01, complete sequence
          Length = 161118

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 454   ggtgaagtgttatgtatgaa 473
             ||||||||||||||||||||
Sbjct: 66788 ggtgaagtgttatgtatgaa 66769



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>gb|AC134897.4| Mus musculus BAC clone RP23-459D9 from 6, complete sequence
          Length = 173574

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 353   catgtgccagtgttgtaaac 372
             ||||||||||||||||||||
Sbjct: 69488 catgtgccagtgttgtaaac 69507



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>gb|AC116952.4| Mus musculus BAC clone RP23-104A7 from 14, complete sequence
          Length = 210088

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 237   atttcctaacaagaacagcaatgg 260
             ||||||| ||||||||||||||||
Sbjct: 90283 atttcctgacaagaacagcaatgg 90260



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>gb|AC153632.2| Mus musculus 6 BAC RP23-450O1 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 182517

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 353    catgtgccagtgttgtaaac 372
              ||||||||||||||||||||
Sbjct: 156128 catgtgccagtgttgtaaac 156147



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>emb|AL591865.8| Mouse DNA sequence from clone RP23-14G21 on chromosome 5, complete
             sequence
          Length = 251952

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 237   atttcctaacaagaacagcaatgg 260
             ||||||||| ||||||||||||||
Sbjct: 28272 atttcctaagaagaacagcaatgg 28295


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,389,946
Number of Sequences: 3902068
Number of extensions: 4389946
Number of successful extensions: 84414
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83748
Number of HSP's gapped (non-prelim): 663
length of query: 604
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 581
effective length of database: 17,143,297,704
effective search space: 9960255966024
effective search space used: 9960255966024
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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