ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart46d02 |
|---|---|
| Clone Library Name | barley_pub |
>RPOB_EHRCR (Q8KWX2) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1380 Score = 30.8 bits (68), Expect = 2.8 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Frame = +1 Query: 298 MKSLVLNGSGCTVFDSRGRIVYRVDN-YGSHRSVDVCLMDITGSVVLQVLKKFRRWEGYR 474 M+S+V GSG V RG IV+RVD Y R+ D + G V + L+KF+R Sbjct: 728 MESIVAAGSGTVVLAKRGGIVHRVDGLYIVIRAFDQEKNEYLG-VDIYNLRKFQRSNHNT 786 Query: 475 C 477 C Sbjct: 787 C 787
>RPOB_EHRCJ (Q3YST5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1380 Score = 30.4 bits (67), Expect = 3.6 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Frame = +1 Query: 298 MKSLVLNGSGCTVFDSRGRIVYRVDN-YGSHRSVDVCLMDITGSVVLQVLKKFRRWEGYR 474 M+S+V GSG V RG IV+RVD Y R+ D + G V + L+KF+R Sbjct: 728 MESIVAAGSGTVVLAKRGGIVHRVDGLYIVIRAFDQEKNEYLG-VDVYNLRKFQRSNHNT 786 Query: 475 C 477 C Sbjct: 787 C 787
>TKT_STAAW (P66963) Transketolase (EC 2.2.1.1) (TK)| Length = 662 Score = 30.0 bits (66), Expect = 4.7 Identities = 18/59 (30%), Positives = 31/59 (52%) Frame = +1 Query: 286 FTIWMKSLVLNGSGCTVFDSRGRIVYRVDNYGSHRSVDVCLMDITGSVVLQVLKKFRRW 462 +T+W + L N F+ R R V G ++ L+ ++GS+ L+ LK+FR+W Sbjct: 40 YTLWTRHLNFNPQSKDYFN-RDRFVLSA---GHGSALLYSLLHVSGSLELEELKQFRQW 94
>TKT_STAAS (Q6G9L6) Transketolase (EC 2.2.1.1) (TK)| Length = 662 Score = 30.0 bits (66), Expect = 4.7 Identities = 18/59 (30%), Positives = 31/59 (52%) Frame = +1 Query: 286 FTIWMKSLVLNGSGCTVFDSRGRIVYRVDNYGSHRSVDVCLMDITGSVVLQVLKKFRRW 462 +T+W + L N F+ R R V G ++ L+ ++GS+ L+ LK+FR+W Sbjct: 40 YTLWTRHLNFNPQSKDYFN-RDRFVLSA---GHGSALLYSLLHVSGSLELEELKQFRQW 94
>TKT_STAAR (Q6GH64) Transketolase (EC 2.2.1.1) (TK)| Length = 662 Score = 30.0 bits (66), Expect = 4.7 Identities = 18/59 (30%), Positives = 31/59 (52%) Frame = +1 Query: 286 FTIWMKSLVLNGSGCTVFDSRGRIVYRVDNYGSHRSVDVCLMDITGSVVLQVLKKFRRW 462 +T+W + L N F+ R R V G ++ L+ ++GS+ L+ LK+FR+W Sbjct: 40 YTLWTRHLNFNPQSKDYFN-RDRFVLSA---GHGSALLYSLLHVSGSLELEELKQFRQW 94
>TKT_STAAN (P99161) Transketolase (EC 2.2.1.1) (TK)| Length = 662 Score = 30.0 bits (66), Expect = 4.7 Identities = 18/59 (30%), Positives = 31/59 (52%) Frame = +1 Query: 286 FTIWMKSLVLNGSGCTVFDSRGRIVYRVDNYGSHRSVDVCLMDITGSVVLQVLKKFRRW 462 +T+W + L N F+ R R V G ++ L+ ++GS+ L+ LK+FR+W Sbjct: 40 YTLWTRHLNFNPQSKDYFN-RDRFVLSA---GHGSALLYSLLHVSGSLELEELKQFRQW 94
>TKT_STAAM (P66962) Transketolase (EC 2.2.1.1) (TK)| Length = 662 Score = 30.0 bits (66), Expect = 4.7 Identities = 18/59 (30%), Positives = 31/59 (52%) Frame = +1 Query: 286 FTIWMKSLVLNGSGCTVFDSRGRIVYRVDNYGSHRSVDVCLMDITGSVVLQVLKKFRRW 462 +T+W + L N F+ R R V G ++ L+ ++GS+ L+ LK+FR+W Sbjct: 40 YTLWTRHLNFNPQSKDYFN-RDRFVLSA---GHGSALLYSLLHVSGSLELEELKQFRQW 94
>TKT_STAAC (Q5HG77) Transketolase (EC 2.2.1.1)| Length = 662 Score = 30.0 bits (66), Expect = 4.7 Identities = 18/59 (30%), Positives = 31/59 (52%) Frame = +1 Query: 286 FTIWMKSLVLNGSGCTVFDSRGRIVYRVDNYGSHRSVDVCLMDITGSVVLQVLKKFRRW 462 +T+W + L N F+ R R V G ++ L+ ++GS+ L+ LK+FR+W Sbjct: 40 YTLWTRHLNFNPQSKDYFN-RDRFVLSA---GHGSALLYSLLHVSGSLELEELKQFRQW 94
>TKT_STAES (Q8CPC7) Transketolase (EC 2.2.1.1) (TK)| Length = 662 Score = 29.6 bits (65), Expect = 6.1 Identities = 17/59 (28%), Positives = 31/59 (52%) Frame = +1 Query: 286 FTIWMKSLVLNGSGCTVFDSRGRIVYRVDNYGSHRSVDVCLMDITGSVVLQVLKKFRRW 462 +T+W + L N F+ R R + G ++ L+ ++GS+ L+ LK+FR+W Sbjct: 40 YTLWTRHLNFNPQSKDFFN-RDRFILSA---GHGSALLYSLLHVSGSLELEELKQFRQW 94
>TKT_STAEQ (Q5HPJ9) Transketolase (EC 2.2.1.1)| Length = 662 Score = 29.6 bits (65), Expect = 6.1 Identities = 17/59 (28%), Positives = 31/59 (52%) Frame = +1 Query: 286 FTIWMKSLVLNGSGCTVFDSRGRIVYRVDNYGSHRSVDVCLMDITGSVVLQVLKKFRRW 462 +T+W + L N F+ R R + G ++ L+ ++GS+ L+ LK+FR+W Sbjct: 40 YTLWTRHLNFNPQSKDFFN-RDRFILSA---GHGSALLYSLLHVSGSLELEELKQFRQW 94
>M3K10_HUMAN (Q02779) Mitogen-activated protein kinase kinase kinase 10 (EC| 2.7.11.25) (Mixed lineage kinase 2) (Protein kinase MST) Length = 954 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/39 (48%), Positives = 20/39 (51%) Frame = +3 Query: 315 QRERLHGLRLPRAHRVPRGQLRLPPVRGRVPHGHHGERG 431 QR L GL PRA R PRG PP R PHG + G Sbjct: 702 QRRWLDGLFFPRAGRFPRG--LSPPAR---PHGRREDVG 735 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,750,051 Number of Sequences: 219361 Number of extensions: 952178 Number of successful extensions: 2908 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2840 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2905 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
