>RPOC_CORJK (Q4JT33) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1323

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -3

Query: 339 LEAPHHLRSSRLPPSAE-AAEIGHRGWERG 253
           L+AP H+R S L P+AE  AE+   GW+RG
Sbjct: 633 LQAPIHVRISHLRPTAEIEAELFPDGWQRG 662

>YGY4_HALSQ (P21562) Hypothetical 80.2 kDa protein in the 5'region of gyrA and|
           gyrB (ORF 4)
          Length = 744

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 25/75 (33%), Positives = 36/75 (48%)
 Frame = +1

Query: 319 EVVGRLKDDGDFDALRRAIVRKVKDNEVLRNSIITEVKQSMVLSEDGSEKLKLKELSDAI 498
           E+VGRL  D D DALR  +V  V D  V R   + EV               L EL+DA 
Sbjct: 408 ELVGRLHGDFDLDALRLVVV--VDDVVVERRLGLVEV---------------LDELADAA 450

Query: 499 FQDVGSKIMGQISDE 543
            ++  ++++G +  E
Sbjct: 451 LEEERARLVGPLVGE 465

>SYV_HALMA (Q5V1H0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 901

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 272 WPISAASADGGSRLLRRWWGASRMTAISTPSAAP 373
           +P      + G RLL++ W ASR+    TP+A P
Sbjct: 608 FPYKEGDLEAGERLLQKLWNASRLVDQLTPAARP 641

>HEM6_BORPE (Q7VWE7) Coproporphyrinogen 3 oxidase, aerobic (EC 1.3.3.3)|
           (Coproporphyrinogen III oxidase, aerobic)
           (Coproporphyrinogenase) (Coprogen oxidase)
          Length = 303

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = -3

Query: 324 HLRSSRLPPSAEA--AEIGHRGWE 259
           H++ +RLPPSA A   E+  RGWE
Sbjct: 65  HVKGTRLPPSASAHRPELAGRGWE 88

>HEM6_BORPA (Q7W7U0) Coproporphyrinogen 3 oxidase, aerobic (EC 1.3.3.3)|
           (Coproporphyrinogen III oxidase, aerobic)
           (Coproporphyrinogenase) (Coprogen oxidase)
          Length = 303

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = -3

Query: 324 HLRSSRLPPSAEA--AEIGHRGWE 259
           H++ +RLPPSA A   E+  RGWE
Sbjct: 65  HVKGTRLPPSASAHRPELAGRGWE 88

>HEM6_BORBR (Q7WL80) Coproporphyrinogen 3 oxidase, aerobic (EC 1.3.3.3)|
           (Coproporphyrinogen III oxidase, aerobic)
           (Coproporphyrinogenase) (Coprogen oxidase)
          Length = 303

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = -3

Query: 324 HLRSSRLPPSAEA--AEIGHRGWE 259
           H++ +RLPPSA A   E+  RGWE
Sbjct: 65  HVKGTRLPPSASAHRPELAGRGWE 88

>ERCC6_HUMAN (Q03468) DNA excision repair protein ERCC-6 (EC 3.6.1.-)|
           (ATP-dependent helicase ERCC6) (Cockayne syndrome
           protein CSB)
          Length = 1493

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 25/81 (30%), Positives = 40/81 (49%)
 Frame = +1

Query: 325 VGRLKDDGDFDALRRAIVRKVKDNEVLRNSIITEVKQSMVLSEDGSEKLKLKELSDAIFQ 504
           VGR +DDGD D  ++ + R         N +  + K+  +  ED SE+      SDA F 
Sbjct: 449 VGRYRDDGDEDYYKQRLRR--------WNKLRLQDKEKRLKLEDDSEE------SDAEF- 493

Query: 505 DVGSKIMGQISDEVWSVIQSG 567
           D G K+ G +  +++   Q+G
Sbjct: 494 DEGFKVPGFLFKKLFKYQQTG 514

>RPOB_BDEBA (Q6MJ09) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1412

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 16/54 (29%), Positives = 36/54 (66%), Gaps = 4/54 (7%)
 Frame = +1

Query: 385  VKDNEV--LRNSIITEVKQSMVLSEDGSEKL--KLKELSDAIFQDVGSKIMGQI 534
            +K+N +  LR+ ++ ++   ++L+EDGS+KL  K +E+++A  + V  +++  I
Sbjct: 989  IKNNAISKLRDILVGKITTGVLLNEDGSQKLLNKGQEITEADLETVPFELLNYI 1042

>SBCD_RHOCA (O68033) Exonuclease sbcD homolog|
          Length = 405

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 26/113 (23%), Positives = 46/113 (40%)
 Frame = +1

Query: 199 LYTTQSSLSLGLGVWSRCPSLPAPMADLGSFSRRRQPTAAEVVGRLKDDGDFDALRRAIV 378
           L+T    +   L  WSR     A +ADLG      Q  A  V G +     FD L  +  
Sbjct: 4   LHTADWHIGQTLNGWSREAEHRAFLADLGEILLAEQVDALLVAGDV-----FDGLNPSGE 58

Query: 379 RKVKDNEVLRNSIITEVKQSMVLSEDGSEKLKLKELSDAIFQDVGSKIMGQIS 537
            +      L   +    +  +VL+    +  +  E  +A+ +++G  ++G +S
Sbjct: 59  AQRLLYAALAGYVRANPRLQIVLTSGNHDPAQRLEAPEAVLRELGVHVLGTLS 111

>EA47_LAMBD (P03752) Protein ea47|
          Length = 410

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +1

Query: 307 PTAAEVVGRLKDDGDFDALRRAIVRKVKDNEVLRNSIITEVKQSMVLSEDGSEKLKL 477
           P   +V+     D  FD  RR    K+KD  + + S       + ++ ED  E+LKL
Sbjct: 187 PMGDDVISPTSFDSLFDEARRITYLKLKDYSISKLSFSMIQYDNKIIPEDIKERLKL 243


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,926,419
Number of Sequences: 219361
Number of extensions: 1199721
Number of successful extensions: 3988
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3988
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)