ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart46d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101799.1| Oryza sativa (japonica cultivar-group) cDNA clon... 258 2e-65
2ref|XM_470601.1| Oryza sativa (japonica cultivar-group), predic... 174 2e-40
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 109 1e-20
4gb|AC099732.2| Oryza sativa (japonica cultivar-group) chromosome... 109 1e-20
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
6gb|AC147241.2| Mus musculus BAC clone RP23-417C21 from chromosom... 46 0.13
7gb|AC112146.3| Mus musculus BAC clone RP23-101G11 from 12, compl... 46 0.13
8gb|AC137928.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
9ref|NM_204906.1| Gallus gallus potassium voltage-gated channel, ... 42 2.0
10gb|AC105319.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
11gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 42 2.0
12gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 42 2.0
13gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 2.0
14gb|DQ072115.1| Homo sapiens solute carrier family 4, anion excha... 42 2.0
15emb|BX470087.8| Zebrafish DNA sequence from clone CH211-202A10 i... 42 2.0
16dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
17gb|U87787.1|GGU87787 Gallus gallus potassium channel Shaker beta... 42 2.0
18gb|AC003043.1|AC003043 Homo sapiens chromosome 17, clone HRPC106... 42 2.0
19gb|L35930.1|HUMAE1ERY Human anion exchanger (AE1) gene, exons 1-20 42 2.0
20emb|X77738.1|HSRCAED H.sapiens red cell anion exchanger (EPB3, A... 42 2.0
21ref|NM_193392.1| Oryza sativa (japonica cultivar-group), predic... 40 7.9
22gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 40 7.9
23emb|Z79603.1|CEM163 Caenorhabditis elegans Cosmid M163, complete... 40 7.9
24emb|Z50070.2|CEF43G6 Caenorhabditis elegans Cosmid F43G6, comple... 40 7.9
25emb|Z83820.2|HS215K18 Human DNA sequence from clone RP1-215K18 o... 40 7.9
26emb|AL159997.14| Human DNA sequence from clone RP11-479K20 on ch... 40 7.9
27emb|AL031665.19|HS545L17 Human DNA sequence from clone RP4-545L1... 40 7.9
28emb|AL663001.3|OSJN00197 Oryza sativa genomic DNA, chromosome 4,... 40 7.9
29emb|AJ278885.1|CRU278885 Chenopodium rubrum mRNA for cyclin depe... 40 7.9
30emb|BX640481.14| Zebrafish DNA sequence from clone DKEY-3H23 in ... 40 7.9
31gb|AC011490.7| Homo sapiens chromosome 19 clone CTB-179L3, compl... 40 7.9
32gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 7.9
33ref|NM_078007.1| Caenorhabditis elegans M163.5 (M163.5) mRNA, co... 40 7.9
34dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
35dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
36dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
37dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
38dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
39gb|AC134230.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.9
40dbj|AP004258.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
41dbj|AP003516.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
42dbj|AP004225.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
43gb|AC064852.4| Homo sapiens BAC clone RP11-174L18 from 2, comple... 40 7.9
44gb|AC013459.9| Homo sapiens BAC clone RP11-169L20 from 2, comple... 40 7.9
45dbj|AP004559.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
46dbj|AP005864.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
47dbj|AP004703.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
48dbj|AP004702.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
49dbj|AK122050.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.9
50ref|XM_313365.2| Anopheles gambiae str. PEST ENSANGP00000011815 ... 40 7.9
51gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.9
52emb|BX667525.2|CNS09SC3 Oryza sativa chromosome 12, . Partial se... 40 7.9
53emb|AL928744.3|CNS08CBH Oryza sativa chromosome 12, . BAC OSJNBa... 40 7.9
54emb|AL731787.3|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb... 40 7.9
55dbj|BA000042.1| Nicotiana tabacum mitochondrial DNA, complete ge... 40 7.9
56emb|X15209.1|OCRYAN O.cuniculus mRNA for skeletal muscle ryanodi... 40 7.9
57emb|X15750.1|OCRRR Rabbit skeletal muscle mRNA for ryanodine rec... 40 7.9
58gb|M64093.1|HUMPCDAN Human putative centromeric DNA gene sequence 40 7.9 
>dbj|AK101799.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066F19, full
           insert sequence
          Length = 1024

 Score =  258 bits (130), Expect = 2e-65
 Identities = 232/266 (87%)
 Strand = Plus / Plus

                                                                       
Query: 319 gaggtggtggggcgcctcaaggatgacggcgatttcgacgccctccgccgcgccattgtc 378
           ||||||||||||||   |||||| ||||| || |||||||| ||||||||||||||  ||
Sbjct: 226 gaggtggtggggcgtgccaaggacgacggggacttcgacgcgctccgccgcgccatcatc 285

                                                                       
Query: 379 cgcaaggtcaaggacaacgaggtgctacgcaacagcataatcacagaagtgaagcagtca 438
           ||||||||||||||||||||||||||||||| || ||||||  |||| ||||||||||||
Sbjct: 286 cgcaaggtcaaggacaacgaggtgctacgcagcaacataattgcagaggtgaagcagtca 345

                                                                       
Query: 439 atggtactaagtgaagatggctctgaaaagctaaagctaaaagaactctctgatgcgatt 498
            ||||| ||| ||||||||||||||||||| ||||||| ||||| || ||||||||||||
Sbjct: 346 gtggtaataaatgaagatggctctgaaaagttaaagctgaaagatctttctgatgcgatt 405

                                                                       
Query: 499 tttcaagacgtagggagcaaaataatgggtcaaatctcagacgaggtgtggagtgtcatc 558
           |  |||||  | ||||||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct: 406 taccaagatatcgggagcaaaataatgggtcaaatctcagacgagatatggggtgtcatc 465

                                     
Query: 559 cagtcaggtgaaactgatatccgagg 584
           |  |||  ||||| ||||||||||||
Sbjct: 466 ctatcaaatgaaattgatatccgagg 491
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>ref|XM_470601.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 741

 Score =  174 bits (88), Expect = 2e-40
 Identities = 163/188 (86%)
 Strand = Plus / Plus

                                                                       
Query: 397 gaggtgctacgcaacagcataatcacagaagtgaagcagtcaatggtactaagtgaagat 456
           ||||||||||||| || ||||||  |||| |||||||||||| ||||| ||| |||||||
Sbjct: 217 gaggtgctacgcagcaacataattgcagaggtgaagcagtcagtggtaataaatgaagat 276

                                                                       
Query: 457 ggctctgaaaagctaaagctaaaagaactctctgatgcgatttttcaagacgtagggagc 516
           |||||||||||| ||||||| ||||| || |||||||||||||  |||||  | ||||||
Sbjct: 277 ggctctgaaaagttaaagctgaaagatctttctgatgcgatttaccaagatatcgggagc 336

                                                                       
Query: 517 aaaataatgggtcaaatctcagacgaggtgtggagtgtcatccagtcaggtgaaactgat 576
           ||||||||||||||||||||||||||| | ||| |||||||||  |||  ||||| ||||
Sbjct: 337 aaaataatgggtcaaatctcagacgagatatggggtgtcatcctatcaaatgaaattgat 396

                   
Query: 577 atccgagg 584
           ||||||||
Sbjct: 397 atccgagg 404



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                       
Query: 319 gaggtggtggggcgcctcaaggatgacggcgatttcgacgccctccgccgcgccattgtc 378
           ||||||||||||||   |||||| ||||| || |||||||| ||||||||||||||  ||
Sbjct: 49  gaggtggtggggcgtgccaaggacgacggggacttcgacgcgctccgccgcgccatcatc 108

                             
Query: 379 cgcaaggtcaaggacaac 396
           ||||||||||||||||||
Sbjct: 109 cgcaaggtcaaggacaac 126
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  109 bits (55), Expect = 1e-20
 Identities = 91/103 (88%)
 Strand = Plus / Plus

                                                                           
Query: 397     gaggtgctacgcaacagcataatcacagaagtgaagcagtcaatggtactaagtgaagat 456
               ||||||||||||| || ||||||  |||| |||||||||||| ||||| ||| |||||||
Sbjct: 6757593 gaggtgctacgcagcaacataattgcagaggtgaagcagtcagtggtaataaatgaagat 6757652

                                                          
Query: 457     ggctctgaaaagctaaagctaaaagaactctctgatgcgattt 499
               |||||||||||| ||||||| ||||| || |||||||||||||
Sbjct: 6757653 ggctctgaaaagttaaagctgaaagatctttctgatgcgattt 6757695



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 70/79 (88%)
 Strand = Plus / Plus

                                                                           
Query: 319     gaggtggtggggcgcctcaaggatgacggcgatttcgacgccctccgccgcgccattgtc 378
               ||||||||||||||   |||||| ||||| || |||||||| ||||||||||||||  ||
Sbjct: 6755216 gaggtggtggggcgtgccaaggacgacggggacttcgacgcgctccgccgcgccatcatc 6755275

                                  
Query: 379     cgcaaggtcaaggacaacg 397
               |||||||||||||||||||
Sbjct: 6755276 cgcaaggtcaaggacaacg 6755294



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                           
Query: 512     ggagcaaaataatgggtcaaatctcagacgaggtgtggagtgtcatccagtcaggtgaaa 571
               |||||||||||||||||||||||||||||||| | ||| |||||||||  |||  |||||
Sbjct: 6757813 ggagcaaaataatgggtcaaatctcagacgagatatggggtgtcatcctatcaaatgaaa 6757872

                            
Query: 572     ctgatatccgagg 584
                ||||||||||||
Sbjct: 6757873 ttgatatccgagg 6757885



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 224      cgctagggttaggggtttgg 243
                ||||||||||||||||||||
Sbjct: 11394329 cgctagggttaggggtttgg 11394348



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 224      cgctagggttaggggtttgg 243
                ||||||||||||||||||||
Sbjct: 11390209 cgctagggttaggggtttgg 11390190
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>gb|AC099732.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1203D03,
             complete sequence
          Length = 82352

 Score =  109 bits (55), Expect = 1e-20
 Identities = 91/103 (88%)
 Strand = Plus / Minus

                                                                         
Query: 397   gaggtgctacgcaacagcataatcacagaagtgaagcagtcaatggtactaagtgaagat 456
             ||||||||||||| || ||||||  |||| |||||||||||| ||||| ||| |||||||
Sbjct: 67152 gaggtgctacgcagcaacataattgcagaggtgaagcagtcagtggtaataaatgaagat 67093

                                                        
Query: 457   ggctctgaaaagctaaagctaaaagaactctctgatgcgattt 499
             |||||||||||| ||||||| ||||| || |||||||||||||
Sbjct: 67092 ggctctgaaaagttaaagctgaaagatctttctgatgcgattt 67050



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 70/79 (88%)
 Strand = Plus / Minus

                                                                         
Query: 319   gaggtggtggggcgcctcaaggatgacggcgatttcgacgccctccgccgcgccattgtc 378
             ||||||||||||||   |||||| ||||| || |||||||| ||||||||||||||  ||
Sbjct: 69529 gaggtggtggggcgtgccaaggacgacggggacttcgacgcgctccgccgcgccatcatc 69470

                                
Query: 379   cgcaaggtcaaggacaacg 397
             |||||||||||||||||||
Sbjct: 69469 cgcaaggtcaaggacaacg 69451



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 65/73 (89%)
 Strand = Plus / Minus

                                                                         
Query: 512   ggagcaaaataatgggtcaaatctcagacgaggtgtggagtgtcatccagtcaggtgaaa 571
             |||||||||||||||||||||||||||||||| | ||| |||||||||  |||  |||||
Sbjct: 66932 ggagcaaaataatgggtcaaatctcagacgagatatggggtgtcatcctatcaaatgaaa 66873

                          
Query: 572   ctgatatccgagg 584
              ||||||||||||
Sbjct: 66872 ttgatatccgagg 66860
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  109 bits (55), Expect = 1e-20
 Identities = 91/103 (88%)
 Strand = Plus / Plus

                                                                           
Query: 397     gaggtgctacgcaacagcataatcacagaagtgaagcagtcaatggtactaagtgaagat 456
               ||||||||||||| || ||||||  |||| |||||||||||| ||||| ||| |||||||
Sbjct: 6756806 gaggtgctacgcagcaacataattgcagaggtgaagcagtcagtggtaataaatgaagat 6756865

                                                          
Query: 457     ggctctgaaaagctaaagctaaaagaactctctgatgcgattt 499
               |||||||||||| ||||||| ||||| || |||||||||||||
Sbjct: 6756866 ggctctgaaaagttaaagctgaaagatctttctgatgcgattt 6756908



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 70/79 (88%)
 Strand = Plus / Plus

                                                                           
Query: 319     gaggtggtggggcgcctcaaggatgacggcgatttcgacgccctccgccgcgccattgtc 378
               ||||||||||||||   |||||| ||||| || |||||||| ||||||||||||||  ||
Sbjct: 6754429 gaggtggtggggcgtgccaaggacgacggggacttcgacgcgctccgccgcgccatcatc 6754488

                                  
Query: 379     cgcaaggtcaaggacaacg 397
               |||||||||||||||||||
Sbjct: 6754489 cgcaaggtcaaggacaacg 6754507



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                           
Query: 512     ggagcaaaataatgggtcaaatctcagacgaggtgtggagtgtcatccagtcaggtgaaa 571
               |||||||||||||||||||||||||||||||| | ||| |||||||||  |||  |||||
Sbjct: 6757026 ggagcaaaataatgggtcaaatctcagacgagatatggggtgtcatcctatcaaatgaaa 6757085

                            
Query: 572     ctgatatccgagg 584
                ||||||||||||
Sbjct: 6757086 ttgatatccgagg 6757098



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 224      cgctagggttaggggtttgg 243
                ||||||||||||||||||||
Sbjct: 11391092 cgctagggttaggggtttgg 11391111



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 224      cgctagggttaggggtttgg 243
                ||||||||||||||||||||
Sbjct: 11386972 cgctagggttaggggtttgg 11386953
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>gb|AC147241.2| Mus musculus BAC clone RP23-417C21 from chromosome 12, complete
             sequence
          Length = 199956

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 309   gactgctgcggaggtggtggggc 331
             |||||||||||||||||||||||
Sbjct: 58533 gactgctgcggaggtggtggggc 58555
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>gb|AC112146.3| Mus musculus BAC clone RP23-101G11 from 12, complete sequence
          Length = 188819

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 309    gactgctgcggaggtggtggggc 331
              |||||||||||||||||||||||
Sbjct: 168433 gactgctgcggaggtggtggggc 168455
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>gb|AC137928.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0040B10,
             complete sequence
          Length = 150825

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 62    ctcctccgtcctctcctcctc 82
             |||||||||||||||||||||
Sbjct: 52241 ctcctccgtcctctcctcctc 52261
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>ref|NM_204906.1| Gallus gallus potassium voltage-gated channel, shaker-related
           subfamily, beta member 1 (KCNAB1), mRNA
          Length = 2865

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 526 ggtcaaatctcagacgaggtg 546
           |||||||||||||||||||||
Sbjct: 553 ggtcaaatctcagacgaggtg 573
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>gb|AC105319.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1657_H11,
             complete sequence
          Length = 98103

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 62    ctcctccgtcctctcctcctc 82
             |||||||||||||||||||||
Sbjct: 89168 ctcctccgtcctctcctcctc 89188
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 291    cagcagacggcggcagccgac 311
              |||||||||||||||||||||
Sbjct: 459007 cagcagacggcggcagccgac 459027
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 328    gggcgcctcaaggatgacggc 348
              |||||||||||||||||||||
Sbjct: 968347 gggcgcctcaaggatgacggc 968367
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 345     cggcgatttcgacgccctccgccgc 369
               ||||||| |||||||||||||||||
Sbjct: 2376442 cggcgatgtcgacgccctccgccgc 2376466
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>gb|DQ072115.1| Homo sapiens solute carrier family 4, anion exchanger, member 1
            (erythrocyte membrane protein band 3, Diego blood group)
            (SLC4A1) gene, complete cds
          Length = 22401

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 249  ctgcccctctctcccagcccc 269
            |||||||||||||||||||||
Sbjct: 6940 ctgcccctctctcccagcccc 6960
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>emb|BX470087.8| Zebrafish DNA sequence from clone CH211-202A10 in linkage group 3,
             complete sequence
          Length = 218404

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 465   aaagctaaagctaaaagaact 485
             |||||||||||||||||||||
Sbjct: 50396 aaagctaaagctaaaagaact 50376
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 62       ctcctccgtcctctcctcctc 82
                |||||||||||||||||||||
Sbjct: 19724167 ctcctccgtcctctcctcctc 19724187
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>gb|U87787.1|GGU87787 Gallus gallus potassium channel Shaker beta 1 subunit cKvbeta1.1
           mRNA, complete cds
          Length = 2865

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 526 ggtcaaatctcagacgaggtg 546
           |||||||||||||||||||||
Sbjct: 553 ggtcaaatctcagacgaggtg 573
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>gb|AC003043.1|AC003043 Homo sapiens chromosome 17, clone HRPC1067M6, complete sequence
          Length = 139488

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 249    ctgcccctctctcccagcccc 269
              |||||||||||||||||||||
Sbjct: 125450 ctgcccctctctcccagcccc 125470
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>gb|L35930.1|HUMAE1ERY Human anion exchanger (AE1) gene, exons 1-20
          Length = 21319

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 249  ctgcccctctctcccagcccc 269
            |||||||||||||||||||||
Sbjct: 6252 ctgcccctctctcccagcccc 6272
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>emb|X77738.1|HSRCAED H.sapiens red cell anion exchanger (EPB3, AE1, Band 3) gene, 3'
           region
          Length = 14795

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 249 ctgcccctctctcccagcccc 269
           |||||||||||||||||||||
Sbjct: 31  ctgcccctctctcccagcccc 51
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>ref|NM_193392.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1365

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 383 aggtcaaggacaacgaggtg 402
           ||||||||||||||||||||
Sbjct: 14  aggtcaaggacaacgaggtg 33
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>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 288    cttcagcagacggcggcagc 307
              ||||||||||||||||||||
Sbjct: 539518 cttcagcagacggcggcagc 539499
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>emb|Z79603.1|CEM163 Caenorhabditis elegans Cosmid M163, complete sequence
          Length = 43245

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 494   cgatttttcaagacgtagggagca 517
             |||||||||||||||||| |||||
Sbjct: 12462 cgatttttcaagacgtagtgagca 12439
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>emb|Z50070.2|CEF43G6 Caenorhabditis elegans Cosmid F43G6, complete sequence
          Length = 38686

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 460  tctgaaaagctaaagctaaa 479
            ||||||||||||||||||||
Sbjct: 4557 tctgaaaagctaaagctaaa 4538
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>emb|Z83820.2|HS215K18 Human DNA sequence from clone RP1-215K18 on chromosome Xq21 Contains a
              novel gene, the gene for a novel protein, an
              ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast)
              (UBE2D2) pseudogene and a CpG island, complete sequence
          Length = 171636

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 462    tgaaaagctaaagctaaaag 481
              ||||||||||||||||||||
Sbjct: 101982 tgaaaagctaaagctaaaag 102001
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>emb|AL159997.14| Human DNA sequence from clone RP11-479K20 on chromosome 9q34.12-34.3
             Contains the 3' end of  the gene for netrin G2 protein
             (KIAA1857), gene KIAA0625 (FLJ10594) and a CpG island,
             complete sequence
          Length = 107076

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 246   ccgctgcccctctctcccagcccc 269
             |||||||||||||||||| |||||
Sbjct: 29762 ccgctgcccctctctccccgcccc 29739
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>emb|AL031665.19|HS545L17 Human DNA sequence from clone RP4-545L17 on chromosome 20p12.2-13
             Contains the 5' end of the RAD21L1 gene for RAD21-like 1
             (S. pombe), the C20orf46 gene, a novel gene, the PSMF1
             gene for proteasome (prosome, macropain) inhibitor subunit
             1 (PI31), the ACTGP3 gene for gamma actin pseudogene 3 and
             three CpG islands, complete sequence
          Length = 145437

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 560   agtcaggtgaaactgatatc 579
             ||||||||||||||||||||
Sbjct: 10122 agtcaggtgaaactgatatc 10103
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>emb|AL663001.3|OSJN00197 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022P19,
             complete sequence
          Length = 135836

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   cgctagggttaggggtttgg 243
             ||||||||||||||||||||
Sbjct: 28014 cgctagggttaggggtttgg 28033
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>emb|AJ278885.1|CRU278885 Chenopodium rubrum mRNA for cyclin dependent kinase (cdc2b gene)
          Length = 1133

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 197  atctttatacaacccagagttctc 220
            |||||||||||| |||||||||||
Sbjct: 1103 atctttatacaaaccagagttctc 1080
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>emb|BX640481.14| Zebrafish DNA sequence from clone DKEY-3H23 in linkage group 10,
             complete sequence
          Length = 111244

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 464   aaaagctaaagctaaaagaa 483
             ||||||||||||||||||||
Sbjct: 51720 aaaagctaaagctaaaagaa 51739
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>gb|AC011490.7| Homo sapiens chromosome 19 clone CTB-179L3, complete sequence
          Length = 115289

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   caggcagcagccccctgaac 176
             ||||||||||||||||||||
Sbjct: 98080 caggcagcagccccctgaac 98099
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 56      gcgcagctcctccgtcctctcctcctcg 83
               |||| ||||||||||| |||||||||||
Sbjct: 1409836 gcgctgctcctccgtcatctcctcctcg 1409809
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>ref|NM_078007.1| Caenorhabditis elegans M163.5 (M163.5) mRNA, complete cds
          Length = 1308

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 494 cgatttttcaagacgtagggagca 517
           |||||||||||||||||| |||||
Sbjct: 357 cgatttttcaagacgtagtgagca 334
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 224     cgctagggttaggggtttgg 243
               ||||||||||||||||||||
Sbjct: 7300644 cgctagggttaggggtttgg 7300663
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 224      cgctagggttaggggtttgg 243
                ||||||||||||||||||||
Sbjct: 17857939 cgctagggttaggggtttgg 17857920



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 224      cgctagggttaggggtttgg 243
                ||||||||||||||||||||
Sbjct: 13846198 cgctagggttaggggtttgg 13846179
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 224      cgctagggttaggggtttgg 243
                ||||||||||||||||||||
Sbjct: 20121387 cgctagggttaggggtttgg 20121406



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 224      cgctagggttaggggtttgg 243
                ||||||||||||||||||||
Sbjct: 20120769 cgctagggttaggggtttgg 20120750
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 224      cgctagggttaggggtttgg 243
                ||||||||||||||||||||
Sbjct: 21416961 cgctagggttaggggtttgg 21416942



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 224     cgctagggttaggggtttgg 243
               ||||||||||||||||||||
Sbjct: 8020647 cgctagggttaggggtttgg 8020666



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 224     cgctagggttaggggtttgg 243
               ||||||||||||||||||||
Sbjct: 8019707 cgctagggttaggggtttgg 8019688
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 383      aggtcaaggacaacgaggtg 402
                ||||||||||||||||||||
Sbjct: 20567272 aggtcaaggacaacgaggtg 20567291



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 224      cgctagggttaggggtttgg 243
                ||||||||||||||||||||
Sbjct: 19895713 cgctagggttaggggtttgg 19895732



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 224      cgctagggttaggggtttgg 243
                ||||||||||||||||||||
Sbjct: 19891593 cgctagggttaggggtttgg 19891574
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>gb|AC134230.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0005J15,
              complete sequence
          Length = 159270

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 224    cgctagggttaggggtttgg 243
              ||||||||||||||||||||
Sbjct: 102626 cgctagggttaggggtttgg 102645



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   cgctagggttaggggtttgg 243
             ||||||||||||||||||||
Sbjct: 98506 cgctagggttaggggtttgg 98487
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>dbj|AP004258.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0024F24
          Length = 172642

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 383   aggtcaaggacaacgaggtg 402
             ||||||||||||||||||||
Sbjct: 29248 aggtcaaggacaacgaggtg 29267
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>dbj|AP003516.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0047D12
          Length = 145981

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 224    cgctagggttaggggtttgg 243
              ||||||||||||||||||||
Sbjct: 118671 cgctagggttaggggtttgg 118690



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 224    cgctagggttaggggtttgg 243
              ||||||||||||||||||||
Sbjct: 114551 cgctagggttaggggtttgg 114532
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>dbj|AP004225.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1156H12
          Length = 159509

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 383   aggtcaaggacaacgaggtg 402
             ||||||||||||||||||||
Sbjct: 91094 aggtcaaggacaacgaggtg 91113
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>gb|AC064852.4| Homo sapiens BAC clone RP11-174L18 from 2, complete sequence
          Length = 152781

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 250  tgcccctctctcccagcccc 269
            ||||||||||||||||||||
Sbjct: 8837 tgcccctctctcccagcccc 8856
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>gb|AC013459.9| Homo sapiens BAC clone RP11-169L20 from 2, complete sequence
          Length = 170705

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 249   ctgcccctctctcccagccc 268
             ||||||||||||||||||||
Sbjct: 79568 ctgcccctctctcccagccc 79587
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>dbj|AP004559.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0461A06
          Length = 136384

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   cgctagggttaggggtttgg 243
             ||||||||||||||||||||
Sbjct: 92817 cgctagggttaggggtttgg 92836



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   cgctagggttaggggtttgg 243
             ||||||||||||||||||||
Sbjct: 91877 cgctagggttaggggtttgg 91858
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>dbj|AP005864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0047P18
          Length = 169128

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   cgctagggttaggggtttgg 243
             ||||||||||||||||||||
Sbjct: 14887 cgctagggttaggggtttgg 14906



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   cgctagggttaggggtttgg 243
             ||||||||||||||||||||
Sbjct: 14269 cgctagggttaggggtttgg 14250
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>dbj|AP004703.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0528B09
          Length = 156897

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   cgctagggttaggggtttgg 243
             ||||||||||||||||||||
Sbjct: 20956 cgctagggttaggggtttgg 20937
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>dbj|AP004702.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0524F03
          Length = 167696

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 224    cgctagggttaggggtttgg 243
              ||||||||||||||||||||
Sbjct: 116886 cgctagggttaggggtttgg 116867
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>dbj|AK122050.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114G10, full
           insert sequence
          Length = 1731

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 383 aggtcaaggacaacgaggtg 402
           ||||||||||||||||||||
Sbjct: 102 aggtcaaggacaacgaggtg 121
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>ref|XM_313365.2| Anopheles gambiae str. PEST ENSANGP00000011815
           (ENSANGG00000009326), partial mRNA
          Length = 2372

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 47  taccgtttcgcgcagctcct 66
           ||||||||||||||||||||
Sbjct: 134 taccgtttcgcgcagctcct 115
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 224      cgctagggttaggggtttgg 243
                ||||||||||||||||||||
Sbjct: 17784308 cgctagggttaggggtttgg 17784289



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 224      cgctagggttaggggtttgg 243
                ||||||||||||||||||||
Sbjct: 13800478 cgctagggttaggggtttgg 13800459
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>emb|BX667525.2|CNS09SC3 Oryza sativa chromosome 12, . Partial sequence from PAC P0185F07 of
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 50021

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   cgctagggttaggggtttgg 243
             ||||||||||||||||||||
Sbjct: 15001 cgctagggttaggggtttgg 14982
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>emb|AL928744.3|CNS08CBH Oryza sativa chromosome 12, . BAC OSJNBa0041B10 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 147543

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 224    cgctagggttaggggtttgg 243
              ||||||||||||||||||||
Sbjct: 140567 cgctagggttaggggtttgg 140586
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>emb|AL731787.3|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb0014C10 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 142246

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   cgctagggttaggggtttgg 243
             ||||||||||||||||||||
Sbjct: 77137 cgctagggttaggggtttgg 77118
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>dbj|BA000042.1| Nicotiana tabacum mitochondrial DNA, complete genome
          Length = 430597

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 459    ctctgaaaagctaaagctaaaagaactctctg 490
              |||||||||| |||||||||||| | ||||||
Sbjct: 429118 ctctgaaaagataaagctaaaagcaatctctg 429149



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 459    ctctgaaaagctaaagctaaaagaactctctg 490
              |||||||||| |||||||||||| | ||||||
Sbjct: 279868 ctctgaaaagataaagctaaaagcaatctctg 279899



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 459   ctctgaaaagctaaagctaaaagaactctctg 490
             |||||||||| |||||||||||| | ||||||
Sbjct: 78368 ctctgaaaagataaagctaaaagcaatctctg 78399
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>emb|X15209.1|OCRYAN O.cuniculus mRNA for skeletal muscle ryanodine receptor
          Length = 15823

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 65   ctccgtcctctcctcctcgc 84
            ||||||||||||||||||||
Sbjct: 9098 ctccgtcctctcctcctcgc 9079
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>emb|X15750.1|OCRRR Rabbit skeletal muscle mRNA for ryanodine receptor
          Length = 15361

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 65   ctccgtcctctcctcctcgc 84
            ||||||||||||||||||||
Sbjct: 8636 ctccgtcctctcctcctcgc 8617
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>gb|M64093.1|HUMPCDAN Human putative centromeric DNA gene sequence
          Length = 13875

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 246  ccgctgcccctctctcccagcccc 269
            |||||||||||||||||| |||||
Sbjct: 1624 ccgctgcccctctctccccgcccc 1647


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,233,477
Number of Sequences: 3902068
Number of extensions: 4233477
Number of successful extensions: 82061
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81020
Number of HSP's gapped (non-prelim): 1041
length of query: 584
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 561
effective length of database: 17,143,297,704
effective search space: 9617390011944
effective search space used: 9617390011944
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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