ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart46c12 |
|---|---|
| Clone Library Name | barley_pub |
>MIMIT_MOUSE (Q59J78) Mimitin, mitochondrial precursor (Myc-induced| mitochondrial protein) (MMTN) Length = 168 Score = 41.6 bits (96), Expect = 5e-04 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 7/73 (9%) Frame = +2 Query: 206 RTQVGVDRAGNHYFSRVEEVDG---AMKEKRWVEFKG----DRDSTTVPVEWICWLNGQR 364 R VG D GN Y+ E + ++EKR VE D ++ +P EW W+ R Sbjct: 20 REHVGTDHLGNKYYYVAEYKNWRGQTIREKRIVEAANRKEVDYEAGDIPTEWEAWIRRTR 79 Query: 365 KKAPTPEELAELE 403 K PT EE+ + E Sbjct: 80 KTPPTMEEILKNE 92
>NDUAC_CAEEL (Q9N2W7) Probable NADH dehydrogenase [ubiquinone] 1 alpha| subcomplex subunit 12 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase 17.0 kDa subunit) Length = 146 Score = 38.9 bits (89), Expect = 0.003 Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Frame = +2 Query: 200 RSRTQVGVDRAGNHYFSRVEEVDGAMKEKRWVEFKG----DRDSTTVPVEWICWLNGQRK 367 R T VG D GN Y+ E + RWVEF D D+T VP EW WL+ Sbjct: 39 RVGTLVGSDNFGNRYY---ENNAYFVPRNRWVEFPDKVWLDYDATQVPPEWHSWLHHITD 95 Query: 368 KAPT 379 AP+ Sbjct: 96 DAPS 99
>MIMIT_HUMAN (Q8N183) Mimitin, mitochondrial precursor (Myc-induced| mitochondrial protein) (MMTN) (B17.2-like) (B17.2L) Length = 169 Score = 38.5 bits (88), Expect = 0.004 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 7/73 (9%) Frame = +2 Query: 206 RTQVGVDRAGNHYFSRVEEVDG---AMKEKRWVEFKG----DRDSTTVPVEWICWLNGQR 364 + VG D+ GN Y+ + + ++EKR VE D ++ +P EW W+ R Sbjct: 20 KEHVGTDQFGNKYYYIPQYKNWRGQTIREKRIVEAANKKEVDYEAGDIPTEWEAWIRRTR 79 Query: 365 KKAPTPEELAELE 403 K PT EE+ + E Sbjct: 80 KTPPTMEEILKNE 92
>Y725_RICPR (Q9ZCK4) Hypothetical protein RP725| Length = 100 Score = 37.4 bits (85), Expect = 0.009 Identities = 18/61 (29%), Positives = 29/61 (47%) Frame = +2 Query: 209 TQVGVDRAGNHYFSRVEEVDGAMKEKRWVEFKGDRDSTTVPVEWICWLNGQRKKAPTPEE 388 T+VG D N Y+ +D + +R V +K +ST +P W WL+ + P + Sbjct: 14 TKVGEDEFLNQYYESRNNIDYLGRSRRCVIYKNINESTKIPPSWYSWLHHLVNEIPKNVQ 73 Query: 389 L 391 L Sbjct: 74 L 74
>NDUAC_ARATH (Q9M9M9) Probable NADH-ubiquinone oxidoreductase subunit B17.2 (EC| 1.6.5.3) (EC 1.6.99.3) (Complex I-B17.2) (CI-B17.2) Length = 159 Score = 37.4 bits (85), Expect = 0.009 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = +2 Query: 209 TQVGVDRAGNHYFSRVEEVDGAMKEKRWVEF--KGDRDSTTVPVEWICWLN 355 T VGVD+ GN Y+ ++ D RWVE+ K +++ VP EW WL+ Sbjct: 50 TLVGVDKFGNKYYQKLG--DTQYGRHRWVEYASKDRYNASQVPAEWHGWLH 98
>NDUAC_HUMAN (Q9UI09) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit| 12 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase subunit B17.2) (Complex I-B17.2) (CI-B17.2) (CIB17.2) (13 kDa differentiation-associated protein) Length = 145 Score = 34.7 bits (78), Expect = 0.056 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 9/70 (12%) Frame = +2 Query: 209 TQVGVDRAGNHYFSRVEEVDGAMKEKRWV----EFKG-----DRDSTTVPVEWICWLNGQ 361 T VG D+ GN Y+ ++ G RWV E G D D + VP EW WL+ Sbjct: 37 TLVGEDKYGNKYYEDNKQFFG---RHRWVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSM 93 Query: 362 RKKAPTPEEL 391 PT + L Sbjct: 94 TDDPPTTKPL 103
>NDUAC_MOUSE (Q7TMF3) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit| 12 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase subunit B17.2) (Complex I-B17.2) (CI-B17.2) (CIB17.2) Length = 145 Score = 32.7 bits (73), Expect = 0.21 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 9/69 (13%) Frame = +2 Query: 200 RSRTQVGVDRAGNHYFSRVEEVDGAMKEKRWV----EFKG-----DRDSTTVPVEWICWL 352 R T VG D+ GN Y+ ++ G RWV E G D D + VP EW WL Sbjct: 34 RIGTLVGEDKYGNKYYEDNKQFFG---RHRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWL 90 Query: 353 NGQRKKAPT 379 + PT Sbjct: 91 HCMTDDPPT 99
>NDUAC_BOVIN (O97725) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit| 12 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase subunit B17.2) (Complex I-B17.2) (CI-B17.2) (CIB17.2) Length = 145 Score = 32.7 bits (73), Expect = 0.21 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 9/69 (13%) Frame = +2 Query: 200 RSRTQVGVDRAGNHYFSRVEEVDGAMKEKRWV----EFKG-----DRDSTTVPVEWICWL 352 R T VG D+ GN Y+ ++ G RWV E G D D + VP EW WL Sbjct: 34 RVGTLVGEDKYGNKYYEDNKQFFG---RHRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWL 90 Query: 353 NGQRKKAPT 379 + PT Sbjct: 91 HCMTDDPPT 99
>BAZ1B_MOUSE (Q9Z277) Bromodomain adjacent to zinc finger domain protein 1B| (Williams-Beuren syndrome chromosome region 9 protein homolog) (WBRS9) Length = 1479 Score = 31.6 bits (70), Expect = 0.47 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 7/63 (11%) Frame = +2 Query: 206 RTQVGVDRAGNHYFSRVEEVDGAMKEKRWV------EFKGDR-DSTTVPVEWICWLNGQR 364 RT +G DR N Y+ EV G EK WV FK R D + +P + C +R Sbjct: 901 RTPIGTDRNHNRYWLFSNEVPGLFIEKGWVHNSIDYRFKHHRKDHSNLPDDDYC---PRR 957 Query: 365 KKA 373 KKA Sbjct: 958 KKA 960
>MUC1_YEAST (P08640) Mucin-like protein 1 precursor| Length = 1367 Score = 30.8 bits (68), Expect = 0.81 Identities = 22/65 (33%), Positives = 29/65 (44%) Frame = -2 Query: 336 STGTVVESRSPLNSTHRFSFMAPSTSSTREK*WLPALSTPTCVRDRNIPSIRSISRLDIA 157 S+ T S +P+ S+ S AP TSST E P S+ T + P S + A Sbjct: 399 SSSTTESSSAPVTSSTTESSSAPVTSSTTESSSAPVTSSTT--ESSSAPVTSSTTESSSA 456 Query: 156 PPPHP 142 P P P Sbjct: 457 PVPTP 461
>BAZ1B_HUMAN (Q9UIG0) Bromodomain adjacent to zinc finger domain protein 1B| (Williams-Beuren syndrome chromosome region 9 protein) (WBRS9) (Williams syndrome transcription factor) (hWALP2) Length = 1483 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = +2 Query: 206 RTQVGVDRAGNHYFSRVEEVDGAMKEKRWV 295 RT +G DR N Y+ +EV G EK WV Sbjct: 900 RTPIGTDRNHNRYWLFSDEVPGLFIEKGWV 929
>PFD5_CAEEL (Q21993) Probable prefoldin subunit 5| Length = 152 Score = 30.0 bits (66), Expect = 1.4 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%) Frame = +2 Query: 164 SKRLMERMLGMF----RSRTQVGVDRAGNHYFSRVEEVDGAMKEKR 289 SK L+E G F R + + DR H +VE V+G +KEKR Sbjct: 83 SKHLVEIGTGYFVELDREKAKAIFDRKKEHITKQVETVEGILKEKR 128
>HLH4_CAEEL (P34555) Helix-loop-helix protein 4| Length = 205 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Frame = -2 Query: 252 REK*WLPALSTPTCVRDRNIPSIRSISRLDIAPP-PHPLPAAFVRSP 115 R + +LPA TC D ++ RS +APP P +P+ F P Sbjct: 109 RHETYLPAPIAATCAPDHSLVDYRSTFASSLAPPVPMQMPSVFSPQP 155
>XERD_OCEIH (Q7ZAM3) Tyrosine recombinase xerD| Length = 297 Score = 29.6 bits (65), Expect = 1.8 Identities = 21/68 (30%), Positives = 29/68 (42%) Frame = -2 Query: 366 FLCPFNQQIHSTGTVVESRSPLNSTHRFSFMAPSTSSTREK*WLPALSTPTCVRDRNIPS 187 FL Q ST T+ S + S H+F TS+ P+L T +DR +P Sbjct: 58 FLYMLKDQGKSTATISRHISSIRSFHQFLIREQITSND------PSLHIETPKKDRKLPD 111 Query: 186 IRSISRLD 163 I S +D Sbjct: 112 ILSQDEVD 119
>VP41_BPAPS (Q9T1Q7) Putative protein p41| Length = 460 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = -1 Query: 361 LSIQPANPLNWNSGRVPVALELHPPLLLHGAVDLLDAGEVVV 236 L P +WN+G++P+ L HP HG ++L D G ++V Sbjct: 353 LDANPRTLTDWNNGKIPL-LFAHPASCGHG-LNLQDGGNILV 392
>DXR_CHLPN (Q9Z8J8) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 379 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/32 (34%), Positives = 17/32 (53%) Frame = -1 Query: 316 VPVALELHPPLLLHGAVDLLDAGEVVVAGPVD 221 V + +HP L+HG V+ LD + + P D Sbjct: 231 VEILAVIHPQSLIHGMVEFLDGSVISIMNPPD 262
>MBD5_HUMAN (Q9P267) Methyl-CpG-binding domain protein 5 (Methyl-CpG-binding| protein MBD5) Length = 1494 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/50 (36%), Positives = 25/50 (50%) Frame = -2 Query: 399 SSANSSGVGAFFLCPFNQQIHSTGTVVESRSPLNSTHRFSFMAPSTSSTR 250 SS+ SS G F + P Q S+G V RSP ++ PS+ ST+ Sbjct: 462 SSSTSSDHGNFMMPPVGPQATSSGIKVPPRSPRSTIGSPRPSMPSSPSTK 511
>MORC4_MOUSE (Q8BMD7) MORC family CW-type zinc finger 4 (Zinc finger CW-type| coiled-coil domain protein 2) Length = 928 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%) Frame = +2 Query: 287 RWVEFKGDRDSTTVPVEWICWLN--GQRKKAPTPEELAELE 403 +W G D +T+P W C+ N + K+ PEE ++ Sbjct: 431 KWRRLPGMVDPSTLPARWFCYYNPHPKFKRCSVPEEQERID 471
>GRLF1_RAT (P81128) Glucocorticoid receptor DNA-binding factor 1 (GAP-associated| protein p190) Length = 1513 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/62 (29%), Positives = 31/62 (50%) Frame = -2 Query: 324 VVESRSPLNSTHRFSFMAPSTSSTREK*WLPALSTPTCVRDRNIPSIRSISRLDIAPPPH 145 VVE ++ + +TH + +A + S+T E P +P C + N+ S D+ PP + Sbjct: 941 VVEKKNIIEATHMYDNVAEACSTTEEVFNSPRAGSPLC--NSNLQD----SEEDVEPPSY 994 Query: 144 PL 139 L Sbjct: 995 HL 996
>V66K_TYYVF (P09506) 66.2 kDa protein (ORF 2)| Length = 607 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/57 (31%), Positives = 29/57 (50%) Frame = -2 Query: 327 TVVESRSPLNSTHRFSFMAPSTSSTREK*WLPALSTPTCVRDRNIPSIRSISRLDIA 157 T++ S ++T ++ MAP S LP L++PT V + P R ++ DIA Sbjct: 366 TILGVHSGASATGNYNLMAPIPS-------LPGLTSPTYVFETTAPQGRVFAQEDIA 415
>DXR_SYMTH (Q67PA9) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 387 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = -1 Query: 298 LHPPLLLHGAVDLLDAGEVVVAGPVDAHL 212 +HP +LH AV+ D + GP D L Sbjct: 241 VHPQSILHSAVEFCDGNIIAQLGPTDMRL 269
>GRLF1_MOUSE (Q91YM2) Glucocorticoid receptor DNA-binding factor 1 (Fragment)| Length = 1337 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/62 (29%), Positives = 31/62 (50%) Frame = -2 Query: 324 VVESRSPLNSTHRFSFMAPSTSSTREK*WLPALSTPTCVRDRNIPSIRSISRLDIAPPPH 145 VVE ++ + +TH + +A + S+T E P +P C + N+ S D+ PP + Sbjct: 779 VVEKKNIIEATHMYDNVAEACSTTEEVFNSPRAGSPLC--NSNLQD----SEEDVEPPSY 832 Query: 144 PL 139 L Sbjct: 833 HL 834
>RDRP_TYYVF (P09507) Putative RNA-directed RNA polymerase (EC 2.7.7.48) (ORF 3)| Length = 1035 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/57 (31%), Positives = 29/57 (50%) Frame = -2 Query: 327 TVVESRSPLNSTHRFSFMAPSTSSTREK*WLPALSTPTCVRDRNIPSIRSISRLDIA 157 T++ S ++T ++ MAP S LP L++PT V + P R ++ DIA Sbjct: 366 TILGVHSGASATGNYNLMAPIPS-------LPGLTSPTYVFETTAPQGRVFAQEDIA 415
>MYO1_SCHPO (Q9Y7Z8) Myosin-1| Length = 1217 Score = 28.1 bits (61), Expect = 5.2 Identities = 20/73 (27%), Positives = 36/73 (49%) Frame = -2 Query: 342 IHSTGTVVESRSPLNSTHRFSFMAPSTSSTREK*WLPALSTPTCVRDRNIPSIRSISRLD 163 + ST T ++ + +++ S APST ++ A S+P+ + + P ++S+ Sbjct: 1044 VTSTTTTIKQATTVSA----SKPAPSTVTS-------AASSPSNISKPSAPVANNVSKPS 1092 Query: 162 IAPPPHPLPAAFV 124 PPP P P A V Sbjct: 1093 AVPPPPPPPPAEV 1105
>HXA5_MORSA (Q9PWD3) Homeobox protein Hox-A5| Length = 281 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = -2 Query: 231 ALSTPTCVRDRNIPSIRSISRLDIAPPPHPLPAAFVRS 118 A +TP+ R S S ++PPP PLP + V S Sbjct: 79 AATTPSVEPVRYTQSANSTGTSSLSPPPDPLPCSSVAS 116
>MOCS3_HUMAN (O95396) Molybdenum cofactor synthesis protein 3 (Molybdopterin| synthase sulfurylase) (MPT synthase sulfurylase) Length = 460 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = +2 Query: 275 MKEKRWVEFKGDRDSTTVPVEWICWLNGQRKKA 373 +KE W E +G ++ VP+ IC L +KA Sbjct: 389 LKEAIWEEKQGTQEGAAVPIYVICKLGNDSQKA 421
>SYC_METAC (Q8TSP6) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 473 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/76 (25%), Positives = 33/76 (43%) Frame = +2 Query: 170 RLMERMLGMFRSRTQVGVDRAGNHYFSRVEEVDGAMKEKRWVEFKGDRDSTTVPVEWICW 349 R +LG+F Q G + F VEE + A K+K W G D+ + + + Sbjct: 404 RKFSDVLGLF---AQAGKEEIPEEVFRLVEEREAARKKKDW----GTSDTLREKIRTLGY 456 Query: 350 LNGQRKKAPTPEELAE 397 + +K+ P ++ E Sbjct: 457 IIQDKKEGPNVKKAEE 472
>EDD_ZYMMO (P21909) Phosphogluconate dehydratase (EC 4.2.1.12)| (6-phosphogluconate dehydratase) Length = 607 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = -1 Query: 325 SGRVPVALELHPPLLLHGAVDLLDAGEVV 239 +G+VPVAL + P L GA+ L G++V Sbjct: 518 TGKVPVALHVSPEALGGGAIGKLRDGDIV 546
>K502_ACTCH (P43394) Fruit protein PKIWI502| Length = 317 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/40 (45%), Positives = 22/40 (55%) Frame = -2 Query: 234 PALSTPTCVRDRNIPSIRSISRLDIAPPPHPLPAAFVRSP 115 P+LS P+ R PS+ S L APP H P AF+R P Sbjct: 8 PSLSRPSLSRH---PSLTLHSSLSHAPPHHR-PVAFLRHP 43
>C76C1_ARATH (O64636) Cytochrome P450 76C1 (EC 1.14.-.-)| Length = 512 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Frame = -1 Query: 157 SAASPSSGRLRPFAARRTSYRAAAL-WTPSSSAGRRLLRR 41 SA SP++ A R +++ A+L W PSSSA RLLRR Sbjct: 103 SARSPTN------AVRSINHQDASLVWLPSSSARWRLLRR 136
>ANLN_XENLA (Q801E2) Actin-binding protein anillin| Length = 1116 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -2 Query: 393 ANSSGVGA-FFLCPFNQQIHSTGTVVESRSPLNSTHRFSFMAPSTSSTREK 244 A S GVG FL F ++ S +PLN HR + + P+T S +E+ Sbjct: 362 ATSGGVGIKSFLERFGEKCQE-----HSPAPLNQGHRTAVLTPNTKSIQER 407
>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein| 15) (One-twenty two protein) Length = 977 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/56 (32%), Positives = 24/56 (42%) Frame = -2 Query: 339 HSTGTVVESRSPLNSTHRFSFMAPSTSSTREK*WLPALSTPTCVRDRNIPSIRSIS 172 H T E +SPL R APSTS+ K L +P+ +D + S S Sbjct: 731 HRTTAPTEGKSPLKKEDRSDGSAPSTSTASSK-----LKSPSQKQDGGTAPVASAS 781
>LECB_SOPJA (P93538) Bark lectin precursor (LECSJABG) (Fragment)| Length = 270 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -2 Query: 399 SSANSSGVGAFFLCPFNQQIHSTG 328 +S ++ G+ AFFL P N QIH G Sbjct: 97 ASKSADGI-AFFLAPLNNQIHGAG 119 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,719,587 Number of Sequences: 219361 Number of extensions: 671207 Number of successful extensions: 2700 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 2645 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2699 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
