ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart46c11 |
|---|---|
| Clone Library Name | barley_pub |
>ISPH_VIBVY (Q7MNM5) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 316 Score = 32.3 bits (72), Expect = 0.61 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%) Frame = +2 Query: 251 RGFTVFDASGNLVYRVDIY---ASDSRAEVVLMDAAGRPVLTVRRKKAISLMGDQWLVFP 421 R TVFDA+ LV +V + AS EVVL+ AG P + + SL G +LV Sbjct: 87 RALTVFDATCPLVTKVHMEVARASRKHMEVVLIGHAGHPEVEGTMGQYASLQGGMYLVEK 146 Query: 422 GEE 430 E+ Sbjct: 147 PED 149
>ISPH_VIBVU (Q8DET0) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 316 Score = 32.3 bits (72), Expect = 0.61 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%) Frame = +2 Query: 251 RGFTVFDASGNLVYRVDIY---ASDSRAEVVLMDAAGRPVLTVRRKKAISLMGDQWLVFP 421 R TVFDA+ LV +V + AS EVVL+ AG P + + SL G +LV Sbjct: 87 RALTVFDATCPLVTKVHMEVARASRKHMEVVLIGHAGHPEVEGTMGQYASLQGGMYLVEK 146 Query: 422 GEE 430 E+ Sbjct: 147 PED 149
>GYRB_MYXXA (O33367) DNA gyrase subunit B (EC 5.99.1.3)| Length = 815 Score = 30.4 bits (67), Expect = 2.3 Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 8/50 (16%) Frame = +3 Query: 237 CSSTAGGSRCSTPAATWC--------TAWTSTRPTPAPRWCSWTPRGGPC 362 C G R TP++ C T+W T T WCS R PC Sbjct: 634 CPGGGGEGRLMTPSSAACRTCWAACATSWCRTPSTTPRSWCSTPTRMEPC 683
>RNPH_SYMTH (Q67SL5) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA| nucleotidyltransferase) Length = 273 Score = 30.4 bits (67), Expect = 2.3 Identities = 24/66 (36%), Positives = 31/66 (46%) Frame = -1 Query: 421 GEDQPLVAHEADGLLAADGEHGPPRGVHEHHLGAGVGRVDVHAVHQVAAGVEHREPPAVE 242 GE++P E + LLA E G R V G V+V AV A+G+ H+EP Sbjct: 204 GEERPFTRRELEELLAL-AESGVRRLVALQREQLGPLGVEVGAVVTEASGIGHQEPGEGA 262 Query: 241 EQRLAP 224 LAP Sbjct: 263 GVSLAP 268
>YT55_STRFR (P20190) Hypothetical protein in transposon Tn4556 (Fragment)| Length = 439 Score = 30.0 bits (66), Expect = 3.0 Identities = 24/59 (40%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Frame = -1 Query: 424 AGEDQPLVAHEADGLLAADG--EHGPPRGVHEHHLGAGVGRVDVHAVHQVAAGVEHREP 254 AGE Q L H D L A G EH P + + HL V+ HA GV HREP Sbjct: 187 AGEVQILDVHAQDLLRAPGGLVEHPPQCLLPQVHLTPRDQPVNGHAGAGRGLGVRHREP 245
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 29.6 bits (65), Expect = 3.9 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +3 Query: 231 SRCSSTAGGSRCSTPAATWCTAWTSTRPT 317 S C ST S +TP++T T W T+PT Sbjct: 1884 SHCPSTLATSSTATPSSTPGTTWILTKPT 1912
>GALE_YERPE (Q9F7D4) UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase)| (UDP-galactose 4-epimerase) Length = 338 Score = 29.6 bits (65), Expect = 3.9 Identities = 22/40 (55%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Frame = -1 Query: 391 ADGLLAADGE-HGPPRGVHEHHLGAGVGRVDVHAVHQVAA 275 ADG +AA HG P GVH +LGAGVG H+V QV A Sbjct: 240 ADGHVAAMKTLHGKP-GVHIFNLGAGVG----HSVLQVVA 274
>RPOA_PRRSR (Q9WJB2) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP Length = 3960 Score = 29.3 bits (64), Expect = 5.1 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = +2 Query: 38 LVNQLTAALGLSPWSSIYL*VS*YTGLVFSVAMAKVHPNLAVPSL 172 ++ LTAAL + WS + + TG V +A + HP AV +L Sbjct: 2079 MIRLLTAALNRNRWSLAFFSLGAVTGFVADLAATQGHPLQAVMNL 2123
>RPOA_PRRS1 (Q9YN02) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP Length = 3966 Score = 29.3 bits (64), Expect = 5.1 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = +2 Query: 38 LVNQLTAALGLSPWSSIYL*VS*YTGLVFSVAMAKVHPNLAVPSL 172 ++ LTAAL + WS + + TG V +A + HP AV +L Sbjct: 2079 MIRLLTAALNRNRWSLAFFSLGAVTGFVADLAATQGHPLQAVMNL 2123
>ISPH_VIBCH (Q9KU44) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 316 Score = 28.9 bits (63), Expect = 6.7 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = +2 Query: 251 RGFTVFDASGNLVYRVDIY---ASDSRAEVVLMDAAGRPVLTVRRKKAISLMGDQWLVFP 421 R TVFDA+ LV +V + AS EVVL+ AG P + + S G +LV Sbjct: 87 RSLTVFDATCPLVTKVHMEVARASRKHMEVVLIGHAGHPEVEGTMGQYASDTGGMYLVEK 146 Query: 422 GEE 430 E+ Sbjct: 147 PED 149
>ISPH_NEIMB (P65192) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 322 Score = 28.9 bits (63), Expect = 6.7 Identities = 27/105 (25%), Positives = 42/105 (40%) Frame = +2 Query: 113 GLVFSVAMAKVHPNLAVPSLGMPAAAAVDEEPVTLTVWRKSLLFNCRGFTVFDASGNLVY 292 G VF +A+V P + + AV +E RGF VFDA+ LV Sbjct: 56 GAVFIEDLAEVPPGATLVYSAHGVSKAVRQEAAE------------RGFRVFDATCPLVT 103 Query: 293 RVDIYASDSRAEVVLMDAAGRPVLTVRRKKAISLMGDQWLVFPGE 427 +V EV +DA ++ + K + + G + PG+ Sbjct: 104 KV-------HKEVARLDAQDCEIIMIGHKGHVEVEGTMGQLAPGK 141
>ISPH_NEIMA (P65191) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 322 Score = 28.9 bits (63), Expect = 6.7 Identities = 27/105 (25%), Positives = 42/105 (40%) Frame = +2 Query: 113 GLVFSVAMAKVHPNLAVPSLGMPAAAAVDEEPVTLTVWRKSLLFNCRGFTVFDASGNLVY 292 G VF +A+V P + + AV +E RGF VFDA+ LV Sbjct: 56 GAVFIEDLAEVPPGATLVYSAHGVSKAVRQEAAE------------RGFRVFDATCPLVT 103 Query: 293 RVDIYASDSRAEVVLMDAAGRPVLTVRRKKAISLMGDQWLVFPGE 427 +V EV +DA ++ + K + + G + PG+ Sbjct: 104 KV-------HKEVARLDAQDCEIIMIGHKGHVEVEGTMGQLAPGK 141
>HME1_HUMAN (Q05925) Homeobox protein engrailed-1 (Hu-En-1)| Length = 392 Score = 28.9 bits (63), Expect = 6.7 Identities = 24/65 (36%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Frame = -1 Query: 454 RVERRRARLLAGED--QPLVAHE---ADGLLAADGEHGPPRGVHEHHLGAGVGRVDVHAV 290 RVER R + AG D PL A L A D GPP G GAG + A Sbjct: 141 RVERDRGQTAAGRDPVHPLGTRAPGAASLLCAPDANCGPPDGSQPAAAGAGASKAGNPAA 200 Query: 289 HQVAA 275 AA Sbjct: 201 AAAAA 205
>LTBP4_MOUSE (Q8K4G1) Latent transforming growth factor beta-binding protein 4| precursor (LTBP-4) Length = 1666 Score = 28.5 bits (62), Expect = 8.7 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = +3 Query: 222 CGASRCSSTAGGSRCSTPA 278 CG RC +TAG C+ PA Sbjct: 764 CGPGRCDNTAGSFHCACPA 782
>AP2A_RAT (P58197) Transcription factor AP-2 alpha (AP2-alpha) (Activating| enhancer-binding protein 2 alpha) (Activator protein 2) (AP-2) Length = 437 Score = 28.5 bits (62), Expect = 8.7 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = -1 Query: 361 HGPPRGVHEHHLGAGVGRVDVHAVHQVAAGVEHREPPAV 245 HGP H LG+G+G + +H++ V H E P + Sbjct: 135 HGP------HGLGSGLGDLPIHSLPHAIEDVPHVEDPGI 167
>AP2A_MOUSE (P34056) Transcription factor AP-2 alpha (AP2-alpha) (Activating| enhancer-binding protein 2 alpha) (Activator protein 2) (AP-2) Length = 437 Score = 28.5 bits (62), Expect = 8.7 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = -1 Query: 361 HGPPRGVHEHHLGAGVGRVDVHAVHQVAAGVEHREPPAV 245 HGP H LG+G+G + +H++ V H E P + Sbjct: 135 HGP------HALGSGLGDLPIHSLPHAIEDVPHVEDPGI 167
>YAV3_XANCV (P14729) Hypothetical 65 kDa avirulence protein in avrBs3 region| Length = 591 Score = 28.5 bits (62), Expect = 8.7 Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 32/108 (29%) Frame = -1 Query: 457 HRVERRRARLLAGEDQPLVAHEADGL------------------LAADGEH---GPPRGV 341 HR++RR A +AG+ L+ +A GL +A DG H G G+ Sbjct: 25 HRLQRRPAAAIAGDGHHLLRGQAMGLAQHRQQPLHRLQRLLAAIVAGDGHHLLRGQAMGL 84 Query: 340 HEHH----------LGAGVGRVDVHAVHQVAAGV-EHREPPAVEEQRL 230 +H L A V H + A G+ +HR+ P QRL Sbjct: 85 AQHRQQPLHRLQRLLAAIVAGDGHHLLRGQAMGLAQHRQQPLHRLQRL 132
>HXB1_CYPCA (Q90346) Homeobox protein Hox-B1| Length = 315 Score = 28.5 bits (62), Expect = 8.7 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = -1 Query: 400 AHEADGLLAADGEHGPPRGVHEHHLGAGVGRVDVHAVHQVAAGVEH 263 +H ADG L G + P H+H +GV H HQ G+ + Sbjct: 47 SHNADGRLYIGGSNQPAAAQHQHQ--SGVYAHHQHQTHQSGIGLTY 90
>AP2A_SHEEP (Q9N0N3) Transcription factor AP-2 alpha (AP2-alpha) (Activating| enhancer-binding protein 2 alpha) (Activator protein 2) (AP-2) Length = 491 Score = 28.5 bits (62), Expect = 8.7 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = -1 Query: 361 HGPPRGVHEHHLGAGVGRVDVHAVHQVAAGVEHREPPAV 245 HGP H LG+G+G + +H++ V H E P + Sbjct: 189 HGP------HGLGSGLGDLPIHSLPHAIEDVPHVEDPGI 221
>PJA1_HUMAN (Q8NG27) Ubiquitin protein ligase Praja1 (EC 6.3.2.-) (RING finger| protein 70) Length = 643 Score = 28.5 bits (62), Expect = 8.7 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = +2 Query: 374 RKKAISLMGDQWLVFPGEETRAPP 445 R++ +S G+ W PG+E R PP Sbjct: 382 REQTLSSSGESWETLPGKEEREPP 405 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,970,507 Number of Sequences: 219361 Number of extensions: 1215717 Number of successful extensions: 3983 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3651 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3974 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
