ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart46c11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475442.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 705 Score = 210 bits (106), Expect = 3e-51 Identities = 154/170 (90%) Strand = Plus / Plus Query: 215 ctgacggtgtggcgcaagtcgctgctcttcaactgccgggggttcacggtgttcgacgcc 274 |||||||||||| | |||||||| || ||||||||| |||||||||||||||||||||| Sbjct: 133 ctgacggtgtggaggaagtcgctactgttcaactgcagggggttcacggtgttcgacgcg 192 Query: 275 agcggcaacctggtgtaccgcgtggacatctacgcgtccgactcccgcgccgaggtggtg 334 |||||| ||||||||||||| ||||||| ||||||| | ||||| ||||| ||||||||| Sbjct: 193 agcggcgacctggtgtaccgggtggacagctacgcggcggactcgcgcgcggaggtggtg 252 Query: 335 ctcatggacgccgcggggcggcccgtgctcaccgtccgccgcaagaaggc 384 ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 253 ctcatggacgccgcgggcgtgcccgtgctcaccgtccgccgcaagaaggc 302 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 397 gggcgaccagtggctggtcttccccggcgaggagacgcgcgcgccgccgctctacgcggt 456 ||||||||||||||||||| |||||| |||||||| ||| |||||||||||||| || Sbjct: 327 gggcgaccagtggctggtccaccccggggaggagacccgcctcccgccgctctacgccgt 386 Query: 457 ga 458 || Sbjct: 387 ga 388 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 140 aaggtgcacccgaacttggccgtgccgtc 168 ||||||||||| ||| ||||||||||||| Sbjct: 10 aaggtgcaccccaacctggccgtgccgtc 38
>gb|AC118289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099O15, complete sequence Length = 137357 Score = 210 bits (106), Expect = 3e-51 Identities = 154/170 (90%) Strand = Plus / Minus Query: 215 ctgacggtgtggcgcaagtcgctgctcttcaactgccgggggttcacggtgttcgacgcc 274 |||||||||||| | |||||||| || ||||||||| |||||||||||||||||||||| Sbjct: 71186 ctgacggtgtggaggaagtcgctactgttcaactgcagggggttcacggtgttcgacgcg 71127 Query: 275 agcggcaacctggtgtaccgcgtggacatctacgcgtccgactcccgcgccgaggtggtg 334 |||||| ||||||||||||| ||||||| ||||||| | ||||| ||||| ||||||||| Sbjct: 71126 agcggcgacctggtgtaccgggtggacagctacgcggcggactcgcgcgcggaggtggtg 71067 Query: 335 ctcatggacgccgcggggcggcccgtgctcaccgtccgccgcaagaaggc 384 ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 71066 ctcatggacgccgcgggcgtgcccgtgctcaccgtccgccgcaagaaggc 71017 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 397 gggcgaccagtggctggtcttccccggcgaggagacgcgcgcgccgccgctctacgcggt 456 ||||||||||||||||||| |||||| |||||||| ||| |||||||||||||| || Sbjct: 70992 gggcgaccagtggctggtccaccccggggaggagacccgcctcccgccgctctacgccgt 70933 Query: 457 ga 458 || Sbjct: 70932 ga 70931 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 140 aaggtgcacccgaacttggccgtgccgtc 168 ||||||||||| ||| ||||||||||||| Sbjct: 71309 aaggtgcaccccaacctggccgtgccgtc 71281
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 210 bits (106), Expect = 3e-51 Identities = 154/170 (90%) Strand = Plus / Minus Query: 215 ctgacggtgtggcgcaagtcgctgctcttcaactgccgggggttcacggtgttcgacgcc 274 |||||||||||| | |||||||| || ||||||||| |||||||||||||||||||||| Sbjct: 23681181 ctgacggtgtggaggaagtcgctactgttcaactgcagggggttcacggtgttcgacgcg 23681122 Query: 275 agcggcaacctggtgtaccgcgtggacatctacgcgtccgactcccgcgccgaggtggtg 334 |||||| ||||||||||||| ||||||| ||||||| | ||||| ||||| ||||||||| Sbjct: 23681121 agcggcgacctggtgtaccgggtggacagctacgcggcggactcgcgcgcggaggtggtg 23681062 Query: 335 ctcatggacgccgcggggcggcccgtgctcaccgtccgccgcaagaaggc 384 ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 23681061 ctcatggacgccgcgggcgtgcccgtgctcaccgtccgccgcaagaaggc 23681012 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 397 gggcgaccagtggctggtcttccccggcgaggagacgcgcgcgccgccgctctacgcggt 456 ||||||||||||||||||| |||||| |||||||| ||| |||||||||||||| || Sbjct: 23680987 gggcgaccagtggctggtccaccccggggaggagacccgcctcccgccgctctacgccgt 23680928 Query: 457 ga 458 || Sbjct: 23680927 ga 23680926 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Plus Query: 202 ggagccggtgacactgacggtgtggcgcaagtcgctgctcttcaactgccgggggttcac 261 |||| ||||| | |||||||||||||| ||||||||| |||||| | ||||||||| Sbjct: 14111729 ggaggcggtgtcgctgacggtgtggcggcggtcgctgctgttcaacgggaaggggttcac 14111788 Query: 262 ggtgttcgacgccagcggcaacctggtgtaccgcgt 297 ||||||||||| || || ||||| |||| |||||| Sbjct: 14111789 ggtgttcgacggcaaggggaacctcgtgttccgcgt 14111824 Score = 44.1 bits (22), Expect = 0.40 Identities = 49/58 (84%) Strand = Plus / Plus Query: 215 ctgacggtgtggcgcaagtcgctgctcttcaactgccgggggttcacggtgttcgacg 272 |||||||||||| ||||||||||| | ||| || || ||||| | |||||||||||| Sbjct: 3118621 ctgacggtgtggtgcaagtcgctggtgttccacggcgaggggtacgcggtgttcgacg 3118678 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 140 aaggtgcacccgaacttggccgtgccgtc 168 ||||||||||| ||| ||||||||||||| Sbjct: 23681304 aaggtgcaccccaacctggccgtgccgtc 23681276
>dbj|AK071834.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118G11, full insert sequence Length = 930 Score = 210 bits (106), Expect = 3e-51 Identities = 154/170 (90%) Strand = Plus / Plus Query: 215 ctgacggtgtggcgcaagtcgctgctcttcaactgccgggggttcacggtgttcgacgcc 274 |||||||||||| | |||||||| || ||||||||| |||||||||||||||||||||| Sbjct: 201 ctgacggtgtggaggaagtcgctactgttcaactgcagggggttcacggtgttcgacgcg 260 Query: 275 agcggcaacctggtgtaccgcgtggacatctacgcgtccgactcccgcgccgaggtggtg 334 |||||| ||||||||||||| ||||||| ||||||| | ||||| ||||| ||||||||| Sbjct: 261 agcggcgacctggtgtaccgggtggacagctacgcggcggactcgcgcgcggaggtggtg 320 Query: 335 ctcatggacgccgcggggcggcccgtgctcaccgtccgccgcaagaaggc 384 ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 321 ctcatggacgccgcgggcgtgcccgtgctcaccgtccgccgcaagaaggc 370 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 397 gggcgaccagtggctggtcttccccggcgaggagacgcgcgcgccgccgctctacgcggt 456 ||||||||||||||||||| |||||| |||||||| ||| |||||||||||||| || Sbjct: 395 gggcgaccagtggctggtccaccccggggaggagacccgcctcccgccgctctacgccgt 454 Query: 457 ga 458 || Sbjct: 455 ga 456 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 140 aaggtgcacccgaacttggccgtgccgtc 168 ||||||||||| ||| ||||||||||||| Sbjct: 78 aaggtgcaccccaacctggccgtgccgtc 106
>ref|NM_191086.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 642 Score = 107 bits (54), Expect = 3e-20 Identities = 84/94 (89%) Strand = Plus / Plus Query: 215 ctgacggtgtggcgcaagtcgctgctcttcaactgccgggggttcacggtgttcgacgcc 274 |||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||| Sbjct: 97 ctgacggtgtggcggaagtcgctgctgttcaactgcaaggggttcacggtgttcgacgcc 156 Query: 275 agcggcaacctggtgtaccgcgtggacatctacg 308 | || ||||||| ||||||||| |||| ||||| Sbjct: 157 aaggggaacctggcgtaccgcgtcgacagctacg 190
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 107 bits (54), Expect = 3e-20 Identities = 84/94 (89%) Strand = Plus / Plus Query: 215 ctgacggtgtggcgcaagtcgctgctcttcaactgccgggggttcacggtgttcgacgcc 274 |||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||| Sbjct: 34794661 ctgacggtgtggcggaagtcgctgctgttcaactgcaaggggttcacggtgttcgacgcc 34794720 Query: 275 agcggcaacctggtgtaccgcgtggacatctacg 308 | || ||||||| ||||||||| |||| ||||| Sbjct: 34794721 aaggggaacctggcgtaccgcgtcgacagctacg 34794754
>dbj|AP003411.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1148D12 Length = 132060 Score = 107 bits (54), Expect = 3e-20 Identities = 84/94 (89%) Strand = Plus / Plus Query: 215 ctgacggtgtggcgcaagtcgctgctcttcaactgccgggggttcacggtgttcgacgcc 274 |||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||| Sbjct: 109901 ctgacggtgtggcggaagtcgctgctgttcaactgcaaggggttcacggtgttcgacgcc 109960 Query: 275 agcggcaacctggtgtaccgcgtggacatctacg 308 | || ||||||| ||||||||| |||| ||||| Sbjct: 109961 aaggggaacctggcgtaccgcgtcgacagctacg 109994
>dbj|AP003255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0454H12 Length = 161004 Score = 107 bits (54), Expect = 3e-20 Identities = 84/94 (89%) Strand = Plus / Plus Query: 215 ctgacggtgtggcgcaagtcgctgctcttcaactgccgggggttcacggtgttcgacgcc 274 |||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||| Sbjct: 53833 ctgacggtgtggcggaagtcgctgctgttcaactgcaaggggttcacggtgttcgacgcc 53892 Query: 275 agcggcaacctggtgtaccgcgtggacatctacg 308 | || ||||||| ||||||||| |||| ||||| Sbjct: 53893 aaggggaacctggcgtaccgcgtcgacagctacg 53926
>gb|AY106227.1| Zea mays PCO085810 mRNA sequence Length = 424 Score = 77.8 bits (39), Expect = 3e-11 Identities = 75/87 (86%) Strand = Plus / Plus Query: 215 ctgacggtgtggcgcaagtcgctgctcttcaactgccgggggttcacggtgttcgacgcc 274 |||||||||||||||||||||||||||||||||||| || ||||| || | ||||||| Sbjct: 163 ctgacggtgtggcgcaagtcgctgctcttcaactgcgacggcttcaccgtctacgacgcc 222 Query: 275 agcggcaacctggtgtaccgcgtggac 301 ||||| |||||| | |||||||||| Sbjct: 223 cgcggcgacctggccttccgcgtggac 249 Score = 46.1 bits (23), Expect = 0.10 Identities = 54/63 (85%), Gaps = 1/63 (1%) Strand = Plus / Plus Query: 319 ccgcgccgaggtggtgctcatggacgccgc-ggggcggcccgtgctcaccgtccgccgca 377 ||||||||| || ||||||||||||||| | |||| ||| |||||||||| ||||||| Sbjct: 279 ccgcgccgacgtcgtgctcatggacgccacgggggaagccgctgctcaccgtgcgccgca 338 Query: 378 aga 380 ||| Sbjct: 339 aga 341
>gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, partial sequence Length = 268433 Score = 71.9 bits (36), Expect = 2e-09 Identities = 36/36 (100%) Strand = Plus / Minus Query: 215 ctgacggtgtggcgcaagtcgctgctcttcaactgc 250 |||||||||||||||||||||||||||||||||||| Sbjct: 241093 ctgacggtgtggcgcaagtcgctgctcttcaactgc 241058 Score = 71.9 bits (36), Expect = 2e-09 Identities = 36/36 (100%) Strand = Plus / Plus Query: 215 ctgacggtgtggcgcaagtcgctgctcttcaactgc 250 |||||||||||||||||||||||||||||||||||| Sbjct: 184333 ctgacggtgtggcgcaagtcgctgctcttcaactgc 184368 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 322 cgccgaggtggtgctcatggacgccgcggggcggcccgtgctcaccgtccgccgcaaga 380 ||||||||| ||||||||||||||||||||| ||| | ||||||||||||||||||| Sbjct: 240989 cgccgaggtcgtgctcatggacgccgcgggggcgccgctcctcaccgtccgccgcaaga 240931 Score = 69.9 bits (35), Expect = 7e-09 Identities = 62/71 (87%) Strand = Plus / Plus Query: 215 ctgacggtgtggcgcaagtcgctgctcttcaactgccgggggttcacggtgttcgacgcc 274 |||||||||||||||| ||||||||||||||||||| || ||||| || ||||||||| Sbjct: 199987 ctgacggtgtggcgcaggtcgctgctcttcaactgcgacggcttcaccgtcttcgacgcc 200046 Query: 275 agcggcaacct 285 | |||| |||| Sbjct: 200047 aacggcgacct 200057 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 322 cgccgaggtggtgctcatggacgccgcggggcggcccgtgctcaccgtccgccgcaaga 380 ||||||||| ||||||||||||||||||||| ||| | ||||||||||||||||||| Sbjct: 184437 cgccgaggtcgtgctcatggacgccgcgggggcgccgctcctcaccgtccgccgcaaga 184495 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 319 ccgcgccgaggtggtgctcatggacgccgcggg 351 |||||||||||| ||||||||||| ||| |||| Sbjct: 200097 ccgcgccgaggtcgtgctcatggatgccacggg 200129
>gb|AC136969.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0048P17, complete sequence Length = 149883 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 218 acggtgtggcgcaagtcgctgctcttcaactgccgggggttcacggtgttcgacgccagc 277 ||||||||||||||||| || ||||||||||||| || ||||| || |||||||||| Sbjct: 63620 acggtgtggcgcaagtctctcctcttcaactgccacggcttcaccgtcttcgacgccaag 63561 Query: 278 ggcaacct 285 |||||||| Sbjct: 63560 ggcaacct 63553
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 218 acggtgtggcgcaagtcgctgctcttcaactgccgggggttcacggtgttcgacgccagc 277 ||||||||||||||||| || ||||||||||||| || ||||| || |||||||||| Sbjct: 954449 acggtgtggcgcaagtctctcctcttcaactgccacggcttcaccgtcttcgacgccaag 954390 Query: 278 ggcaacct 285 |||||||| Sbjct: 954389 ggcaacct 954382
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 218 acggtgtggcgcaagtcgctgctcttcaactgccgggggttcacggtgttcgacgccagc 277 ||||||||||||||||| || ||||||||||||| || ||||| || |||||||||| Sbjct: 896744 acggtgtggcgcaagtctctcctcttcaactgccacggcttcaccgtcttcgacgccaag 896685 Query: 278 ggcaacct 285 |||||||| Sbjct: 896684 ggcaacct 896677
>dbj|AK073422.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044A06, full insert sequence Length = 1171 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 218 acggtgtggcgcaagtcgctgctcttcaactgccgggggttcacggtgttcgacgccagc 277 ||||||||||||||||| || ||||||||||||| || ||||| || |||||||||| Sbjct: 214 acggtgtggcgcaagtctctcctcttcaactgccacggcttcaccgtcttcgacgccaag 273 Query: 278 ggcaacct 285 |||||||| Sbjct: 274 ggcaacct 281
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 218 acggtgtggcgcaagtcgctgctcttcaactgccgggggttcacggtgttcgacgccagc 277 ||||||||||||||||| || ||||||||||||| || ||||| || |||||||||| Sbjct: 896050 acggtgtggcgcaagtctctcctcttcaactgccacggcttcaccgtcttcgacgccaag 895991 Query: 278 ggcaacct 285 |||||||| Sbjct: 895990 ggcaacct 895983
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 218 acggtgtggcgcaagtcgctgctcttcaactgccgggggttcacggtgttcgacgccagc 277 ||||||||||||||||| || ||||||||||||| || ||||| || |||||||||| Sbjct: 954449 acggtgtggcgcaagtctctcctcttcaactgccacggcttcaccgtcttcgacgccaag 954390 Query: 278 ggcaacct 285 |||||||| Sbjct: 954389 ggcaacct 954382
>emb|BX000505.1|CNS08CDV Oryza sativa chromosome 12, . BAC OJ1126_F08 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 134217 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 218 acggtgtggcgcaagtcgctgctcttcaactgccgggggttcacggtgttcgacgccagc 277 ||||||||||||||||| || ||||||||||||| || ||||| || |||||||||| Sbjct: 92034 acggtgtggcgcaagtctctcctcttcaactgccacggcttcaccgtcttcgacgccaag 91975 Query: 278 ggcaacct 285 |||||||| Sbjct: 91974 ggcaacct 91967
>gb|AC136524.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0474A01, complete sequence Length = 140077 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Plus Query: 202 ggagccggtgacactgacggtgtggcgcaagtcgctgctcttcaactgccgggggttcac 261 |||| ||||| | |||||||||||||| ||||||||| |||||| | ||||||||| Sbjct: 59284 ggaggcggtgtcgctgacggtgtggcggcggtcgctgctgttcaacgggaaggggttcac 59343 Query: 262 ggtgttcgacgccagcggcaacctggtgtaccgcgt 297 ||||||||||| || || ||||| |||| |||||| Sbjct: 59344 ggtgttcgacggcaaggggaacctcgtgttccgcgt 59379
>dbj|AK058638.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-D08, full insert sequence Length = 1230 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Plus Query: 202 ggagccggtgacactgacggtgtggcgcaagtcgctgctcttcaactgccgggggttcac 261 |||| ||||| | |||||||||||||| ||||||||| |||||| | ||||||||| Sbjct: 141 ggaggcggtgtcgctgacggtgtggcggcggtcgctgctgttcaacgggaaggggttcac 200 Query: 262 ggtgttcgacgccagcggcaacctggtgtaccgcgt 297 ||||||||||| || || ||||| |||| |||||| Sbjct: 201 ggtgttcgacggcaaggggaacctcgtgttccgcgt 236 Score = 42.1 bits (21), Expect = 1.6 Identities = 48/57 (84%) Strand = Plus / Plus Query: 326 gaggtggtgctcatggacgccgcggggcggcccgtgctcaccgtccgccgcaagaag 382 ||||| |||||||||||||||| || || || | |||||| |||||||||||||| Sbjct: 265 gaggtcgtgctcatggacgccgacggccgcgccctcctcaccatccgccgcaagaag 321
>gb|AC093492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0059G01, complete sequence Length = 141661 Score = 44.1 bits (22), Expect = 0.40 Identities = 49/58 (84%) Strand = Plus / Plus Query: 215 ctgacggtgtggcgcaagtcgctgctcttcaactgccgggggttcacggtgttcgacg 272 |||||||||||| ||||||||||| | ||| || || ||||| | |||||||||||| Sbjct: 105865 ctgacggtgtggtgcaagtcgctggtgttccacggcgaggggtacgcggtgttcgacg 105922
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 268 cgacgccagcggcaacctggtg 289 |||||||||||||||||||||| Sbjct: 5057247 cgacgccagcggcaacctggtg 5057226
>ref|XM_392260.2| PREDICTED: Apis mellifera similar to NAV2 protein (LOC408725), mRNA Length = 9084 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 gcaacctggtgtaccgcgtgg 299 ||||||||||||||||||||| Sbjct: 3527 gcaacctggtgtaccgcgtgg 3547
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 ccgtgctcaccgtccgccgca 377 ||||||||||||||||||||| Sbjct: 8316782 ccgtgctcaccgtccgccgca 8316802
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 260 acggtgttcgacgccagcggcaacc 284 ||||||||||||| ||||||||||| Sbjct: 29239421 acggtgttcgacgtcagcggcaacc 29239445
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 266 ttcgacgccagcggcaacctg 286 ||||||||||||||||||||| Sbjct: 2069839 ttcgacgccagcggcaacctg 2069819
>gb|DQ163916.1| Bacteriophage M6, complete genome Length = 59446 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 290 taccgcgtggacatctacgcg 310 ||||||||||||||||||||| Sbjct: 28311 taccgcgtggacatctacgcg 28331
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 312 ccgactcccgcgccgaggtggtgct 336 |||| |||||||||||||||||||| Sbjct: 3742475 ccgattcccgcgccgaggtggtgct 3742451
>dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0018H04 Length = 142053 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 260 acggtgttcgacgccagcggcaacc 284 ||||||||||||| ||||||||||| Sbjct: 2219 acggtgttcgacgtcagcggcaacc 2243
>dbj|AP005934.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0023E10 Length = 155906 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 ccgtgctcaccgtccgccgca 377 ||||||||||||||||||||| Sbjct: 25616 ccgtgctcaccgtccgccgca 25636
>dbj|AP005586.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0450F09 Length = 148752 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 ccgtgctcaccgtccgccgca 377 ||||||||||||||||||||| Sbjct: 140704 ccgtgctcaccgtccgccgca 140724
>dbj|AK105531.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G10, full insert sequence Length = 1447 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 260 acggtgttcgacgccagcggcaacc 284 ||||||||||||| ||||||||||| Sbjct: 392 acggtgttcgacgtcagcggcaacc 416
>gb|AY682924.1| Pseudomonas aeruginosa triacylglycerol lipase (LipA) and lipase chaperone (LipB) genes, complete cds Length = 2092 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tcgacgccagcggcaacctg 286 |||||||||||||||||||| Sbjct: 1257 tcgacgccagcggcaacctg 1276
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 186 cggcggctgtggacgaggagccgg 209 |||||||||||||| ||||||||| Sbjct: 2031820 cggcggctgtggaccaggagccgg 2031797
>ref|XM_366516.1| Magnaporthe grisea 70-15 chromosome VII predicted protein (MG02592.4) partial mRNA Length = 1668 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 gctctcgccctggtcctcga 86 |||||||||||||||||||| Sbjct: 363 gctctcgccctggtcctcga 344
>gb|AY658664.1| Synthetic construct Peudomonas aeruginosa clone FLH041503.01F PA2863 gene, partial cds Length = 867 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tcgacgccagcggcaacctg 286 |||||||||||||||||||| Sbjct: 86 tcgacgccagcggcaacctg 105
>ref|XM_590551.2| PREDICTED: Bos taurus similar to KIAA1862 protein (LOC512939), mRNA Length = 4412 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 tcagtgtggccatggcgaag 142 |||||||||||||||||||| Sbjct: 2549 tcagtgtggccatggcgaag 2568
>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence Length = 574126 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 ttccccggcgaggagacgcg 435 |||||||||||||||||||| Sbjct: 422228 ttccccggcgaggagacgcg 422247
>gb|BT011133.1| Drosophila melanogaster HL01056 full insert cDNA Length = 3148 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 caagaaggccatcagcctca 395 |||||||||||||||||||| Sbjct: 2282 caagaaggccatcagcctca 2301
>gb|AF412611.1| Bryconamericus emperador isolate stri-1305 ATPase synthase subunit 8 and ATPase synthase subunit 6 genes, complete cds; mitochondrial genes for mitochondrial products Length = 842 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 aaaccaactaactgcagctcttgg 66 |||||||| ||||||||||||||| Sbjct: 515 aaaccaaccaactgcagctcttgg 538
>gb|AF412610.1| Bryconamericus emperador isolate stri-3728 ATPase synthase subunit 8 and ATPase synthase subunit 6 genes, complete cds; mitochondrial genes for mitochondrial products Length = 842 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 aaaccaactaactgcagctcttgg 66 |||||||| ||||||||||||||| Sbjct: 515 aaaccaaccaactgcagctcttgg 538
>gb|AC023714.5| Drosophila melanogaster X BAC RP98-19D19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 160100 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 caagaaggccatcagcctca 395 |||||||||||||||||||| Sbjct: 49320 caagaaggccatcagcctca 49339
>emb|BX842577.1| Mycobacterium tuberculosis H37Rv complete genome; segment 6/13 Length = 347496 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 186 cggcggctgtggacgaggagccgg 209 |||||||||||||| ||||||||| Sbjct: 303143 cggcggctgtggaccaggagccgg 303120
>emb|BX248340.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 7/14 Length = 291050 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 186 cggcggctgtggacgaggagccgg 209 |||||||||||||| ||||||||| Sbjct: 110855 cggcggctgtggaccaggagccgg 110832
>gb|AY122142.1| Drosophila melanogaster HL02867 full insert cDNA Length = 3251 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 caagaaggccatcagcctca 395 |||||||||||||||||||| Sbjct: 2385 caagaaggccatcagcctca 2404
>gb|AY119168.1| Drosophila melanogaster RH43809 full insert cDNA Length = 1333 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 caagaaggccatcagcctca 395 |||||||||||||||||||| Sbjct: 472 caagaaggccatcagcctca 491
>ref|NM_206622.2| Drosophila melanogaster CG32776-RB, transcript variant B (CG32776), mRNA Length = 3981 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 caagaaggccatcagcctca 395 |||||||||||||||||||| Sbjct: 3114 caagaaggccatcagcctca 3133
>ref|NM_166996.2| Drosophila melanogaster CG32776-RA, transcript variant A (CG32776), mRNA Length = 3252 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 caagaaggccatcagcctca 395 |||||||||||||||||||| Sbjct: 2385 caagaaggccatcagcctca 2404
>dbj|AB008452.1| Pseudomonas aeruginosa gene for lipase, complete cds Length = 2658 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tcgacgccagcggcaacctg 286 |||||||||||||||||||| Sbjct: 1534 tcgacgccagcggcaacctg 1553
>ref|NM_001038741.1| Drosophila melanogaster CG32776-RC, transcript variant C (CG32776), mRNA Length = 3255 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 caagaaggccatcagcctca 395 |||||||||||||||||||| Sbjct: 2388 caagaaggccatcagcctca 2407
>ref|NM_001038740.1| Drosophila melanogaster CG32776-RD, transcript variant D (CG32776), mRNA Length = 3984 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 caagaaggccatcagcctca 395 |||||||||||||||||||| Sbjct: 3117 caagaaggccatcagcctca 3136
>dbj|D50588.1| Pseudomonas aeruginosa DNA for lipase modulator protein, complete cds Length = 1371 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tcgacgccagcggcaacctg 286 |||||||||||||||||||| Sbjct: 256 tcgacgccagcggcaacctg 275
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 gccgcggggcggcccgtgct 363 |||||||||||||||||||| Sbjct: 2585260 gccgcggggcggcccgtgct 2585241
>gb|AE004712.1| Pseudomonas aeruginosa PAO1, section 273 of 529 of the complete genome Length = 10102 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tcgacgccagcggcaacctg 286 |||||||||||||||||||| Sbjct: 9208 tcgacgccagcggcaacctg 9227
>gb|DQ348076.1| Pseudomonas aeruginosa lipase (lipB) gene, complete cds Length = 1023 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tcgacgccagcggcaacctg 286 |||||||||||||||||||| Sbjct: 242 tcgacgccagcggcaacctg 261
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 256 gttcacggtgttcgacgccagcggcaac 283 |||||| |||||||||||| |||||||| Sbjct: 7366327 gttcaccgtgttcgacgccggcggcaac 7366300
>emb|X63391.1|PALIPHG Pseudomonas aeruginosa lipH gene for hypothetical protein, strain PAO1 Length = 1100 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tcgacgccagcggcaacctg 286 |||||||||||||||||||| Sbjct: 291 tcgacgccagcggcaacctg 310
>gb|AF080235.1|AF080235 Streptomyces cyanogenus landomycin biosynthetic gene cluster, complete sequence Length = 34644 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 268 cgacgccagcggcaacctggtgtaccgc 295 |||||||| ||||||||||||| ||||| Sbjct: 16536 cgacgccaccggcaacctggtgcaccgc 16563
>gb|AE003429.4| Drosophila melanogaster chromosome X, section 13 of 74 of the complete sequence Length = 326403 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 caagaaggccatcagcctca 395 |||||||||||||||||||| Sbjct: 128933 caagaaggccatcagcctca 128914
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.2 Identities = 32/36 (88%) Strand = Plus / Minus Query: 321 gcgccgaggtggtgctcatggacgccgcggggcggc 356 ||||||| ||||||||||| ||| ||||||| |||| Sbjct: 3324811 gcgccgacgtggtgctcatcgacaccgcgggccggc 3324776
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 gacggtgtggcgcaagtcgc 236 |||||||||||||||||||| Sbjct: 5669681 gacggtgtggcgcaagtcgc 5669662 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,783,395 Number of Sequences: 3902068 Number of extensions: 2783395 Number of successful extensions: 58261 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57102 Number of HSP's gapped (non-prelim): 1158 length of query: 463 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 441 effective length of database: 17,147,199,772 effective search space: 7561915099452 effective search space used: 7561915099452 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
