ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart46c10 |
|---|---|
| Clone Library Name | barley_pub |
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 67.0 bits (162), Expect = 4e-11 Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 2/83 (2%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPE--GYGFIEFQSRAAAEY 553 +LW+GDL+ WMD T++ +A + + +VK++R+K + Y F++F S AAAE Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLN--EPVNVKVMRSKASSSETLISYCFVQFSSSAAAER 143 Query: 554 ALGTFNGQMMPNVETVFKLNWAS 622 AL +N M+P FKLNWA+ Sbjct: 144 ALMKYNNTMIPGAHCTFKLNWAT 166 Score = 38.5 bits (88), Expect = 0.016 Identities = 22/67 (32%), Positives = 35/67 (52%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 S+++GDL +++ L+ F + P TS KII + TG YGF+ F S ++AL Sbjct: 183 SIFVGDLLPTTEDSDLFMTFRSIYPS-CTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHAL 241 Query: 560 GTFNGQM 580 G + Sbjct: 242 MHMQGYL 248 Score = 31.6 bits (70), Expect = 2.0 Identities = 19/68 (27%), Positives = 36/68 (52%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 ++++G L + E L F P G ++ ++KI K G GF+++ ++AAE A+ Sbjct: 298 TVFVGGLASNLSEKDLQVCFQPFG--RILNIKIPFGK------GCGFVQYSEKSAAEKAI 349 Query: 560 GTFNGQMM 583 T G ++ Sbjct: 350 NTMQGALV 357
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 64.7 bits (156), Expect = 2e-10 Identities = 31/81 (38%), Positives = 50/81 (61%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +LW+G+L+ W+ E ++ + +G + VK+IRN++TG GY F+EF S A A+ Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLG--KAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM 151 Query: 560 GTFNGQMMPNVETVFKLNWAS 622 + N + +P +FKLNWAS Sbjct: 152 -SMNNKPIPGTNHLFKLNWAS 171 Score = 35.4 bits (80), Expect = 0.14 Identities = 21/67 (31%), Positives = 33/67 (49%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 S+++GDL ++E +Y+ FA S KI+ + T GYGF+ F + AL Sbjct: 187 SIFVGDLSPNVNEFDVYSLFAS-RYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSAL 245 Query: 560 GTFNGQM 580 GQ+ Sbjct: 246 AEMQGQI 252
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 54.3 bits (129), Expect = 3e-07 Identities = 25/68 (36%), Positives = 44/68 (64%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 +RS+++G++ Y E L + F+ VGP V S +++ ++ TG+P+GYGF E+Q + A Sbjct: 15 LRSVFVGNIPYEATEEQLKDIFSEVGP--VVSFRLVYDRETGKPKGYGFCEYQDQETALS 72 Query: 554 ALGTFNGQ 577 A+ NG+ Sbjct: 73 AMRNLNGR 80
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 54.3 bits (129), Expect = 3e-07 Identities = 25/68 (36%), Positives = 44/68 (64%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 +RS+++G++ Y E L + F+ VGP V S +++ ++ TG+P+GYGF E+Q + A Sbjct: 15 LRSVFVGNIPYEATEEQLKDIFSEVGP--VVSFRLVYDRETGKPKGYGFCEYQDQETALS 72 Query: 554 ALGTFNGQ 577 A+ NG+ Sbjct: 73 AMRNLNGR 80
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 54.3 bits (129), Expect = 3e-07 Identities = 25/68 (36%), Positives = 44/68 (64%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 +RS+++G++ Y E L + F+ VGP V S +++ ++ TG+P+GYGF E+Q + A Sbjct: 15 LRSVFVGNIPYEATEEQLKDIFSEVGP--VVSFRLVYDRETGKPKGYGFCEYQDQETALS 72 Query: 554 ALGTFNGQ 577 A+ NG+ Sbjct: 73 AMRNLNGR 80
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 54.3 bits (129), Expect = 3e-07 Identities = 25/68 (36%), Positives = 44/68 (64%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 +RS+++G++ Y E L + F+ VGP V S +++ ++ TG+P+GYGF E+Q + A Sbjct: 15 LRSVFVGNIPYEATEEQLKDIFSEVGP--VVSFRLVYDRETGKPKGYGFCEYQDQETALS 72 Query: 554 ALGTFNGQ 577 A+ NG+ Sbjct: 73 AMRNLNGR 80
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 52.8 bits (125), Expect = 8e-07 Identities = 30/80 (37%), Positives = 45/80 (56%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++GDL + E LY F P GP + T +I R+ T P GYG++ F+ A AE+AL Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFT--RICRDPVTRSPLGYGYVNFRFPADAEWAL 76 Query: 560 GTFNGQMMPNVETVFKLNWA 619 T N ++ F+L W+ Sbjct: 77 NTMNFDLING--KPFRLMWS 94 Score = 30.4 bits (67), Expect = 4.5 Identities = 19/72 (26%), Positives = 37/72 (51%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 + +++I +L +D L+ F+ G + S K++ + + + GY ++ F S AAA Sbjct: 105 VGNIFIKNLDKSIDNRALFYLFSAFG--NILSCKVVCDDNGSK--GYAYVHFDSLAAANR 160 Query: 554 ALGTFNGQMMPN 589 A+ NG + N Sbjct: 161 AIWHMNGVRLNN 172
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 52.8 bits (125), Expect = 8e-07 Identities = 30/80 (37%), Positives = 45/80 (56%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++GDL + E LY F P GP + T +I R+ T P GYG++ F+ A AE+AL Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFT--RICRDPVTRSPLGYGYVNFRFPADAEWAL 76 Query: 560 GTFNGQMMPNVETVFKLNWA 619 T N ++ F+L W+ Sbjct: 77 NTMNFDLING--KPFRLMWS 94 Score = 30.4 bits (67), Expect = 4.5 Identities = 19/72 (26%), Positives = 37/72 (51%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 + +++I +L +D L+ F+ G + S K++ + + + GY ++ F S AAA Sbjct: 105 VGNIFIKNLDKSIDNRALFYLFSAFG--NILSCKVVCDDNGSK--GYAYVHFDSLAAANR 160 Query: 554 ALGTFNGQMMPN 589 A+ NG + N Sbjct: 161 AIWHMNGVRLNN 172
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 52.8 bits (125), Expect = 8e-07 Identities = 30/80 (37%), Positives = 45/80 (56%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++GDL + E LY F P GP + T +I R+ T P GYG++ F+ A AE+AL Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFT--RICRDPVTRSPLGYGYVNFRFPADAEWAL 76 Query: 560 GTFNGQMMPNVETVFKLNWA 619 T N ++ F+L W+ Sbjct: 77 NTMNFDLING--KPFRLMWS 94 Score = 30.4 bits (67), Expect = 4.5 Identities = 19/72 (26%), Positives = 37/72 (51%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 + +++I +L +D L+ F+ G + S K++ + + + GY ++ F S AAA Sbjct: 105 VGNIFIKNLDKSIDNRALFYLFSAFG--NILSCKVVCDDNGSK--GYAYVHFDSLAAANR 160 Query: 554 ALGTFNGQMMPN 589 A+ NG + N Sbjct: 161 AIWHMNGVRLNN 172
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 52.8 bits (125), Expect = 8e-07 Identities = 30/80 (37%), Positives = 45/80 (56%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++GDL + E LY F P GP + T +I R+ T P GYG++ F+ A AE+AL Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFT--RICRDPVTRSPLGYGYVNFRFPADAEWAL 76 Query: 560 GTFNGQMMPNVETVFKLNWA 619 T N ++ F+L W+ Sbjct: 77 NTMNFDLING--KPFRLMWS 94 Score = 30.4 bits (67), Expect = 4.5 Identities = 19/72 (26%), Positives = 37/72 (51%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 + +++I +L +D L+ F+ G + S K++ + + + GY ++ F S AAA Sbjct: 105 VGNIFIKNLDKSIDNRALFYLFSAFG--NILSCKVVCDDNGSK--GYAYVHFDSLAAANR 160 Query: 554 ALGTFNGQMMPN 589 A+ NG + N Sbjct: 161 AIWHMNGVRLNN 172
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 52.8 bits (125), Expect = 8e-07 Identities = 30/80 (37%), Positives = 45/80 (56%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++GDL + E LY F P GP + T +I R+ T P GYG++ F+ A AE+AL Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFT--RICRDPVTRSPLGYGYVNFRFPADAEWAL 76 Query: 560 GTFNGQMMPNVETVFKLNWA 619 T N ++ F+L W+ Sbjct: 77 NTMNFDLING--KPFRLMWS 94 Score = 30.4 bits (67), Expect = 4.5 Identities = 19/72 (26%), Positives = 37/72 (51%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 + +++I +L +D L+ F+ G + S K++ + + + GY ++ F S AAA Sbjct: 105 VGNIFIKNLDKSIDNRALFYLFSAFG--NILSCKVVCDDNGSK--GYAYVHFDSLAAANR 160 Query: 554 ALGTFNGQMMPN 589 A+ NG + N Sbjct: 161 AIWHMNGVRLNN 172
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 52.8 bits (125), Expect = 8e-07 Identities = 30/80 (37%), Positives = 45/80 (56%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++GDL + E LY F P GP + T +I R+ T P GYG++ F+ A AE+AL Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFT--RICRDPVTRSPLGYGYVNFRFPADAEWAL 76 Query: 560 GTFNGQMMPNVETVFKLNWA 619 T N ++ F+L W+ Sbjct: 77 NTMNFDLING--KPFRLMWS 94 Score = 30.4 bits (67), Expect = 4.5 Identities = 19/72 (26%), Positives = 37/72 (51%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 + +++I +L +D L+ F+ G + S K++ + + + GY ++ F S AAA Sbjct: 105 VGNIFIKNLDKSIDNRALFYLFSAFG--NILSCKVVCDDNGSK--GYAYVHFDSLAAANR 160 Query: 554 ALGTFNGQMMPN 589 A+ NG + N Sbjct: 161 AIWHMNGVRLNN 172
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 52.0 bits (123), Expect = 1e-06 Identities = 28/70 (40%), Positives = 42/70 (60%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 + SL+IGDL + E LY F+P GP + S+++ R+ T + GY +I FQ A AE Sbjct: 10 LASLYIGDLHPDVTEAMLYEKFSPAGP--IMSIRVCRDIATRRSLGYAYINFQQPADAER 67 Query: 554 ALGTFNGQMM 583 AL T N +++ Sbjct: 68 ALDTMNFEVI 77 Score = 39.3 bits (90), Expect = 0.010 Identities = 20/70 (28%), Positives = 42/70 (60%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 + +++I +L +D LY+ F+ G + S K++ +++ + GYGF+ F+++ AA Sbjct: 98 VGNVFIKNLDDSIDNKALYDTFSAFG--DILSCKVVCDEYGSR--GYGFVHFETQEAANR 153 Query: 554 ALGTFNGQMM 583 A+ T NG ++ Sbjct: 154 AIQTMNGMLL 163 Score = 33.5 bits (75), Expect = 0.53 Identities = 20/68 (29%), Positives = 37/68 (54%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ +L +D+ L F+P G +TS K++ G +G+GF+ F S A A+ Sbjct: 295 NLYVKNLDDGIDDDRLRKEFSPYGT--ITSTKVMTEG--GHSKGFGFVCFSSPEEATKAV 350 Query: 560 GTFNGQMM 583 NG+++ Sbjct: 351 TEMNGRIV 358 Score = 31.2 bits (69), Expect = 2.6 Identities = 21/85 (24%), Positives = 44/85 (51%) Frame = +2 Query: 323 LQYGAQMAXXXXXXXEDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQ 502 L+YGA++ + +++I + MD+ L F+ G SVK++ + ++G+ Sbjct: 181 LEYGAKVM--------EFTNVYIKNFGEDMDDKRLKEIFSAFG--NTLSVKVMMD-NSGR 229 Query: 503 PEGYGFIEFQSRAAAEYALGTFNGQ 577 G+GF+ + + A+ A+ NG+ Sbjct: 230 SRGFGFVNYGNHEEAQKAVTEMNGK 254
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 51.6 bits (122), Expect = 2e-06 Identities = 27/64 (42%), Positives = 38/64 (59%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 SL++GDL + E LY F+P GP V S+++ R+ T + GY ++ FQ A AE AL Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGP--VLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69 Query: 560 GTFN 571 T N Sbjct: 70 DTMN 73 Score = 35.4 bits (80), Expect = 0.14 Identities = 18/70 (25%), Positives = 41/70 (58%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 + +++I +L +D LY+ F+ G + S K++ +++ + GY F+ F+++ AA+ Sbjct: 98 VGNVFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENGSK--GYAFVHFETQEAADK 153 Query: 554 ALGTFNGQMM 583 A+ NG ++ Sbjct: 154 AIEKMNGMLL 163 Score = 34.7 bits (78), Expect = 0.24 Identities = 21/68 (30%), Positives = 38/68 (55%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L+I +L +D+ L F+P G +TS K++ G+ +G+GF+ F S A A+ Sbjct: 295 NLYIKNLDDTIDDEKLRKEFSPFG--SITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 350 Query: 560 GTFNGQMM 583 NG+++ Sbjct: 351 TEMNGRIV 358 Score = 30.8 bits (68), Expect = 3.4 Identities = 17/70 (24%), Positives = 39/70 (55%) Frame = +2 Query: 368 EDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAA 547 ++ +++I + +D+ L F+ G + SVK++R+ + G+ +G+GF+ ++ A Sbjct: 188 KEFTNVYIKNFGEEVDDESLKELFSQFG--KTLSVKVMRDPN-GKSKGFGFVSYEKHEDA 244 Query: 548 EYALGTFNGQ 577 A+ NG+ Sbjct: 245 NKAVEEMNGK 254
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 51.6 bits (122), Expect = 2e-06 Identities = 26/64 (40%), Positives = 38/64 (59%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 SL++GDL + E LY F+P GP + S+++ R+ T + GY ++ FQ A AE AL Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGP--ILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69 Query: 560 GTFN 571 T N Sbjct: 70 DTMN 73 Score = 39.7 bits (91), Expect = 0.007 Identities = 20/70 (28%), Positives = 42/70 (60%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 + +++I +L +D LY+ F+ G + S K++ +++ + GYGF+ F+++ AAE Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENGSK--GYGFVHFETQEAAER 153 Query: 554 ALGTFNGQMM 583 A+ NG ++ Sbjct: 154 AIDKMNGMLL 163 Score = 33.1 bits (74), Expect = 0.69 Identities = 20/68 (29%), Positives = 37/68 (54%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ +L +D+ L F P G +TS K++ G+ +G+GF+ F S A A+ Sbjct: 295 NLYVKNLDDGIDDERLRKEFLPFGT--ITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350 Query: 560 GTFNGQMM 583 NG+++ Sbjct: 351 TEMNGRIV 358 Score = 32.0 bits (71), Expect = 1.5 Identities = 18/58 (31%), Positives = 32/58 (55%) Frame = +2 Query: 410 MDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQMM 583 M++ L F GP SVK++ + + G+ +G+GF+ F+ A+ A+ NG+ M Sbjct: 202 MNDERLKEMFGKYGP--ALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEMNGKDM 256
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 51.6 bits (122), Expect = 2e-06 Identities = 27/70 (38%), Positives = 42/70 (60%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 + SL++GDL + E LY F+P GP + S+++ R+ T + GY +I FQ A AE Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGP--IMSIRVCRDIATRRSLGYAYINFQQPADAER 67 Query: 554 ALGTFNGQMM 583 AL T N +++ Sbjct: 68 ALDTMNFEVI 77 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/70 (30%), Positives = 42/70 (60%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 + +++I +L +D LY+ F+ G + S K++ ++H + GYGF+ F+++ AA Sbjct: 98 VGNVFIKNLDESIDNKALYDTFSAFG--NILSCKVVCDEHGSR--GYGFVHFETQEAANR 153 Query: 554 ALGTFNGQMM 583 A+ T NG ++ Sbjct: 154 AIQTMNGMLL 163 Score = 33.5 bits (75), Expect = 0.53 Identities = 20/68 (29%), Positives = 37/68 (54%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ +L +D+ L F+P G +TS K++ G +G+GF+ F S A A+ Sbjct: 295 NLYVKNLDDGIDDDRLRKEFSPYGT--ITSAKVMTEG--GHSKGFGFVCFSSPEEATKAV 350 Query: 560 GTFNGQMM 583 NG+++ Sbjct: 351 TEMNGRIV 358 Score = 32.7 bits (73), Expect = 0.90 Identities = 22/85 (25%), Positives = 43/85 (50%) Frame = +2 Query: 323 LQYGAQMAXXXXXXXEDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQ 502 L+YGA++ + +++I + MD+ L F+ G SVK++ + TG+ Sbjct: 181 LEYGAKVM--------EFTNVYIKNFGEDMDDKRLREIFSAFG--NTLSVKVMMDD-TGR 229 Query: 503 PEGYGFIEFQSRAAAEYALGTFNGQ 577 G+GF+ + + A+ A+ NG+ Sbjct: 230 SRGFGFVNYGNHEEAQKAVSEMNGK 254
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 51.6 bits (122), Expect = 2e-06 Identities = 24/68 (35%), Positives = 43/68 (63%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 +RS+++G++ Y E L + F+ VG V S +++ ++ TG+P+GYGF E+Q + A Sbjct: 15 LRSVFVGNIPYEATEEQLKDIFSEVG--SVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72 Query: 554 ALGTFNGQ 577 A+ NG+ Sbjct: 73 AMRNLNGR 80
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 51.6 bits (122), Expect = 2e-06 Identities = 24/68 (35%), Positives = 43/68 (63%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 +RS+++G++ Y E L + F+ VG V S +++ ++ TG+P+GYGF E+Q + A Sbjct: 15 LRSVFVGNIPYEATEEQLKDIFSEVG--SVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72 Query: 554 ALGTFNGQ 577 A+ NG+ Sbjct: 73 AMRNLNGR 80
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 50.8 bits (120), Expect = 3e-06 Identities = 26/64 (40%), Positives = 38/64 (59%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 SL++GDL + E LY F+P GP + S+++ R+ T + GY ++ FQ A AE AL Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP--ILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69 Query: 560 GTFN 571 T N Sbjct: 70 DTMN 73 Score = 39.3 bits (90), Expect = 0.010 Identities = 20/70 (28%), Positives = 42/70 (60%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 + +++I +L +D LY+ F+ G + S K++ +++ + GYGF+ F+++ AAE Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENGSK--GYGFVHFETQEAAER 153 Query: 554 ALGTFNGQMM 583 A+ NG ++ Sbjct: 154 AIEKMNGMLL 163 Score = 34.3 bits (77), Expect = 0.31 Identities = 19/70 (27%), Positives = 39/70 (55%) Frame = +2 Query: 368 EDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAA 547 ++ +++I + MD+ L F GP SVK++ ++ +G+ +G+GF+ F+ A Sbjct: 188 KEFTNVYIKNFGEDMDDERLKELFGKFGP--ALSVKVMTDE-SGKSKGFGFVSFERHEDA 244 Query: 548 EYALGTFNGQ 577 + A+ NG+ Sbjct: 245 QKAVDEMNGK 254 Score = 33.9 bits (76), Expect = 0.40 Identities = 20/68 (29%), Positives = 38/68 (55%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ +L +D+ L F+P G +TS K++ G+ +G+GF+ F S A A+ Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGT--ITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350 Query: 560 GTFNGQMM 583 NG+++ Sbjct: 351 TEMNGRIV 358
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 50.8 bits (120), Expect = 3e-06 Identities = 26/64 (40%), Positives = 38/64 (59%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 SL++GDL + E LY F+P GP + S+++ R+ T + GY ++ FQ A AE AL Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP--ILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69 Query: 560 GTFN 571 T N Sbjct: 70 DTMN 73 Score = 39.3 bits (90), Expect = 0.010 Identities = 20/70 (28%), Positives = 42/70 (60%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 + +++I +L +D LY+ F+ G + S K++ +++ + GYGF+ F+++ AAE Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENGSK--GYGFVHFETQEAAER 153 Query: 554 ALGTFNGQMM 583 A+ NG ++ Sbjct: 154 AIEKMNGMLL 163 Score = 34.3 bits (77), Expect = 0.31 Identities = 19/70 (27%), Positives = 39/70 (55%) Frame = +2 Query: 368 EDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAA 547 ++ +++I + MD+ L F GP SVK++ ++ +G+ +G+GF+ F+ A Sbjct: 188 KEFTNVYIKNFGEDMDDERLKELFGKFGP--ALSVKVMTDE-SGKSKGFGFVSFERHEDA 244 Query: 548 EYALGTFNGQ 577 + A+ NG+ Sbjct: 245 QKAVDEMNGK 254 Score = 33.9 bits (76), Expect = 0.40 Identities = 20/68 (29%), Positives = 38/68 (55%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ +L +D+ L F+P G +TS K++ G+ +G+GF+ F S A A+ Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGT--ITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350 Query: 560 GTFNGQMM 583 NG+++ Sbjct: 351 TEMNGRIV 358
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 50.8 bits (120), Expect = 3e-06 Identities = 26/64 (40%), Positives = 38/64 (59%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 SL++GDL + E LY F+P GP + S+++ R+ T + GY ++ FQ A AE AL Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP--ILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69 Query: 560 GTFN 571 T N Sbjct: 70 DTMN 73 Score = 39.3 bits (90), Expect = 0.010 Identities = 20/70 (28%), Positives = 42/70 (60%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 + +++I +L +D LY+ F+ G + S K++ +++ + GYGF+ F+++ AAE Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENGSK--GYGFVHFETQEAAER 153 Query: 554 ALGTFNGQMM 583 A+ NG ++ Sbjct: 154 AIEKMNGMLL 163 Score = 34.7 bits (78), Expect = 0.24 Identities = 19/70 (27%), Positives = 40/70 (57%) Frame = +2 Query: 368 EDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAA 547 ++ +++I + MD+ L + F GP SVK++ ++ +G+ +G+GF+ F+ A Sbjct: 188 KEFTNVYIKNFGEDMDDERLKDLFGKFGP--ALSVKVMTDE-SGKSKGFGFVSFERHEDA 244 Query: 548 EYALGTFNGQ 577 + A+ NG+ Sbjct: 245 QKAVDEMNGK 254 Score = 33.9 bits (76), Expect = 0.40 Identities = 20/68 (29%), Positives = 38/68 (55%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ +L +D+ L F+P G +TS K++ G+ +G+GF+ F S A A+ Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGT--ITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350 Query: 560 GTFNGQMM 583 NG+++ Sbjct: 351 TEMNGRIV 358
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 50.8 bits (120), Expect = 3e-06 Identities = 26/64 (40%), Positives = 38/64 (59%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 SL++GDL + E LY F+P GP + S+++ R+ T + GY ++ FQ A AE AL Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP--ILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69 Query: 560 GTFN 571 T N Sbjct: 70 DTMN 73 Score = 39.3 bits (90), Expect = 0.010 Identities = 20/70 (28%), Positives = 42/70 (60%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 + +++I +L +D LY+ F+ G + S K++ +++ + GYGF+ F+++ AAE Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENGSK--GYGFVHFETQEAAER 153 Query: 554 ALGTFNGQMM 583 A+ NG ++ Sbjct: 154 AIEKMNGMLL 163 Score = 34.7 bits (78), Expect = 0.24 Identities = 19/70 (27%), Positives = 40/70 (57%) Frame = +2 Query: 368 EDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAA 547 ++ +++I + MD+ L + F GP SVK++ ++ +G+ +G+GF+ F+ A Sbjct: 188 KEFTNVYIKNFGEDMDDERLKDLFGKFGP--ALSVKVMTDE-SGKSKGFGFVSFERHEDA 244 Query: 548 EYALGTFNGQ 577 + A+ NG+ Sbjct: 245 QKAVDEMNGK 254 Score = 33.9 bits (76), Expect = 0.40 Identities = 20/68 (29%), Positives = 38/68 (55%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ +L +D+ L F+P G +TS K++ G+ +G+GF+ F S A A+ Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGT--ITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350 Query: 560 GTFNGQMM 583 NG+++ Sbjct: 351 TEMNGRIV 358
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 50.8 bits (120), Expect = 3e-06 Identities = 26/64 (40%), Positives = 38/64 (59%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 SL++GDL + E LY F+P GP + S+++ R+ T + GY ++ FQ A AE AL Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP--ILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69 Query: 560 GTFN 571 T N Sbjct: 70 DTMN 73 Score = 39.7 bits (91), Expect = 0.007 Identities = 20/70 (28%), Positives = 42/70 (60%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 + +++I +L +D LY+ F+ G + S K++ +++ + GYGF+ F+++ AAE Sbjct: 98 VGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENGSK--GYGFVHFETQEAAER 153 Query: 554 ALGTFNGQMM 583 A+ NG ++ Sbjct: 154 AIDKMNGMLL 163 Score = 33.9 bits (76), Expect = 0.40 Identities = 20/68 (29%), Positives = 37/68 (54%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ +L +D+ L F P G +TS K++ G+ +G+GF+ F S A A+ Sbjct: 295 NLYVKNLDDGIDDERLRKEFTPFG--SITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350 Query: 560 GTFNGQMM 583 NG+++ Sbjct: 351 TEMNGRIV 358 Score = 32.0 bits (71), Expect = 1.5 Identities = 19/70 (27%), Positives = 36/70 (51%) Frame = +2 Query: 368 EDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAA 547 ++ +++I + MD+ L F G SVK++ + H G+ G+GF+ F+ A Sbjct: 188 KEFTNVYIKNFGEDMDDERLKEWFGQYGA--ALSVKVMTDDH-GKSRGFGFVSFERHEDA 244 Query: 548 EYALGTFNGQ 577 + A+ NG+ Sbjct: 245 QKAVDDMNGK 254
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 49.7 bits (117), Expect = 7e-06 Identities = 27/70 (38%), Positives = 41/70 (58%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 + SL+IGDL + E LY F+P GP + S+++ R+ T + Y +I FQ A AE Sbjct: 10 LASLYIGDLHPDVTEAMLYEKFSPAGP--IMSIRVCRDIATRRSLSYAYINFQQPADAER 67 Query: 554 ALGTFNGQMM 583 AL T N +++ Sbjct: 68 ALDTMNFEVI 77 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/70 (30%), Positives = 41/70 (58%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 + +++I +L +D LY+ F+ G + S K++ ++H + GYGF+ F++ AA Sbjct: 98 VGNVFIKNLDESIDNKALYDTFSAFG--NILSCKVVCDEHGSR--GYGFVHFETHEAANR 153 Query: 554 ALGTFNGQMM 583 A+ T NG ++ Sbjct: 154 AIQTMNGMLL 163 Score = 32.7 bits (73), Expect = 0.90 Identities = 20/68 (29%), Positives = 36/68 (52%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ +L +D+ L F P G +TS K++ G +G+GF+ F S A A+ Sbjct: 295 NLYVKNLDDGIDDDRLRKEFLPYGT--ITSAKVMTEG--GHSKGFGFVCFSSPEEATKAV 350 Query: 560 GTFNGQMM 583 NG+++ Sbjct: 351 TEMNGRIV 358 Score = 31.2 bits (69), Expect = 2.6 Identities = 21/85 (24%), Positives = 43/85 (50%) Frame = +2 Query: 323 LQYGAQMAXXXXXXXEDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQ 502 L+YGA++ + +++I + MD+ L F+ G SVK++ + +G+ Sbjct: 181 LEYGAKVM--------EFTNVYIKNFGEDMDDKRLREIFSAFG--NTLSVKVMMDD-SGR 229 Query: 503 PEGYGFIEFQSRAAAEYALGTFNGQ 577 G+GF+ + + A+ A+ NG+ Sbjct: 230 SRGFGFVNYGNHEEAQKAVSEMNGK 254
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 48.9 bits (115), Expect = 1e-05 Identities = 26/70 (37%), Positives = 43/70 (61%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 SL++GDL ++E+ L++ F+ GP V S+++ R+ T + GY ++ FQ A AE AL Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGP--VLSIRVCRDVITRRSLGYAYVNFQQPADAERAL 60 Query: 560 GTFNGQMMPN 589 T N ++ N Sbjct: 61 DTMNFDLVRN 70 Score = 39.3 bits (90), Expect = 0.010 Identities = 21/64 (32%), Positives = 39/64 (60%) Frame = +2 Query: 413 DETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQMMPNV 592 D+ L F P G ++TS K++ +K G+ +G+GF+ F++ AAE A+ NG+ M Sbjct: 195 DDEKLKEFFEPYG--KITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEG 251 Query: 593 ETVF 604 ++++ Sbjct: 252 KSLY 255 Score = 37.0 bits (84), Expect = 0.048 Identities = 20/68 (29%), Positives = 42/68 (61%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ +L +D+ L AF+P G +TS K++ ++ G+ +G+GF+ F + + A A+ Sbjct: 288 NLYVKNLDDTIDDDRLRIAFSPYG--NITSAKVMTDEE-GRSKGFGFVCFNAASEATCAV 344 Query: 560 GTFNGQMM 583 NG+++ Sbjct: 345 TELNGRVV 352 Score = 36.2 bits (82), Expect = 0.081 Identities = 18/70 (25%), Positives = 39/70 (55%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 + +++I +L +D +Y+ F+ G + S K+ ++ G +GYGF+ F++ AA Sbjct: 89 VGNVFIKNLDRAIDNKAIYDTFSAFG--NILSCKVATDEK-GNSKGYGFVHFETEEAANT 145 Query: 554 ALGTFNGQMM 583 ++ NG ++ Sbjct: 146 SIDKVNGMLL 155
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 48.9 bits (115), Expect = 1e-05 Identities = 25/64 (39%), Positives = 36/64 (56%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 SL++GDL + E LY F+P GP + S++I R+ T Y ++ FQ AE+AL Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGP--ILSIRICRDLITSGSSNYAYVNFQHTKDAEHAL 69 Query: 560 GTFN 571 T N Sbjct: 70 DTMN 73 Score = 35.8 bits (81), Expect = 0.11 Identities = 21/68 (30%), Positives = 39/68 (57%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ +L +D+ L AF+P G +TS K++ G+ +G+GF+ F S A A+ Sbjct: 295 NLYVKNLDDGIDDERLRKAFSPFGT--ITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350 Query: 560 GTFNGQMM 583 NG+++ Sbjct: 351 TEMNGRIV 358 Score = 34.3 bits (77), Expect = 0.31 Identities = 18/56 (32%), Positives = 33/56 (58%) Frame = +2 Query: 410 MDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQ 577 MD+ L + F GP SVK++ ++ +G+ +G+GF+ F+ A+ A+ NG+ Sbjct: 202 MDDERLKDLFGKFGP--ALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGK 254 Score = 32.0 bits (71), Expect = 1.5 Identities = 16/70 (22%), Positives = 39/70 (55%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 + ++++ +L ++ LY+ + G + S ++ +++ + GYGF+ F++ AAE Sbjct: 98 VGNIFVKNLDKSINNKALYDTVSAFG--NILSCNVVCDENGSK--GYGFVHFETHEAAER 153 Query: 554 ALGTFNGQMM 583 A+ NG ++ Sbjct: 154 AIKKMNGMLL 163
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 48.1 bits (113), Expect = 2e-05 Identities = 25/71 (35%), Positives = 42/71 (59%) Frame = +2 Query: 371 DIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAE 550 D RS+++G+L Y +DE+ L F G + +V+I+RN TG G+G++ F++ A Sbjct: 283 DKRSVFVGNLPYRVDESALEEHFLDCG--SIVAVRIVRNPLTGVGRGFGYVLFENTDAVH 340 Query: 551 YALGTFNGQMM 583 AL N ++M Sbjct: 341 LALKLNNSELM 351
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 47.4 bits (111), Expect = 4e-05 Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 L+IG L DE L +AF+ VT +++ NK TG+ GYGF+ F S +A A+ Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNG--VTEARVMTNKVTGRSRGYGFVNFISEDSANSAIS 90 Query: 563 TFNGQMMP--NVETVFKLNWAS 622 NGQ + N+ +W S Sbjct: 91 AMNGQELNGFNISVNVAKDWPS 112
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 47.4 bits (111), Expect = 4e-05 Identities = 27/70 (38%), Positives = 41/70 (58%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +++IG+L +DE LY+ F+ G T KI+R+ TG +GY FI F S A++ A+ Sbjct: 101 NIFIGNLDPEIDEKLLYDTFSAFGVILQTP-KIMRDPDTGNSKGYAFINFASFDASDAAI 159 Query: 560 GTFNGQMMPN 589 NGQ + N Sbjct: 160 EAMNGQYLCN 169 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/64 (34%), Positives = 37/64 (57%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 ++++G L + E L+ F GP V + + +++ TGQ +GYGF+EF S A+YA+ Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGP--VVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71 Query: 560 GTFN 571 N Sbjct: 72 KIMN 75
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 46.6 bits (109), Expect = 6e-05 Identities = 23/80 (28%), Positives = 47/80 (58%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 +++GDL + + +AFAP G +++ +++++ TG+ +GYGF+ F ++ AE A+ Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFG--KISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 173 Query: 563 TFNGQMMPNVETVFKLNWAS 622 GQ + + + NWA+ Sbjct: 174 HMGGQWLGGRQ--IRTNWAT 191 Score = 33.9 bits (76), Expect = 0.40 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 14/96 (14%) Frame = +2 Query: 377 RSLWIGDLQYWMDETYLYNAFAPVGP--------QQVTSVKIIRN------KHTGQPEGY 514 R+L++G+L + E + F+ +GP +Q S ++ + +HT + Y Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSN-DPY 67 Query: 515 GFIEFQSRAAAEYALGTFNGQMMPNVETVFKLNWAS 622 F+EF A AL NG+ + E K+NWA+ Sbjct: 68 CFVEFYEHRDAAAALAAMNGRKILGKEV--KVNWAT 101
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 46.6 bits (109), Expect = 6e-05 Identities = 23/80 (28%), Positives = 47/80 (58%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 +++GDL + + +AFAP G +++ +++++ TG+ +GYGF+ F ++ AE A+ Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFG--KISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 156 Query: 563 TFNGQMMPNVETVFKLNWAS 622 GQ + + + NWA+ Sbjct: 157 HMGGQWLGGRQ--IRTNWAT 174 Score = 40.0 bits (92), Expect = 0.006 Identities = 26/82 (31%), Positives = 42/82 (51%) Frame = +2 Query: 377 RSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYA 556 R+L++G+L + E + F+ +GP + S K+I + P Y F+EF A A Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCK--SCKMITEHTSNDP--YCFVEFYEHRDAAAA 64 Query: 557 LGTFNGQMMPNVETVFKLNWAS 622 L NG+ + E K+NWA+ Sbjct: 65 LAAMNGRKILGKEV--KVNWAT 84
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/71 (32%), Positives = 42/71 (59%) Frame = +2 Query: 371 DIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAE 550 D RS+++G+L Y ++++ L F G + +V+I+RN TG G+G++ F++ A Sbjct: 289 DKRSVFVGNLPYKIEDSALEEHFLDCG--SIVAVRIVRNPLTGVGRGFGYVLFENTDAVH 346 Query: 551 YALGTFNGQMM 583 AL N ++M Sbjct: 347 LALKLNNSELM 357
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 45.1 bits (105), Expect = 2e-04 Identities = 23/65 (35%), Positives = 36/65 (55%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 L+IG L + D+ L +AFA G V K+I ++ TG+ G+GF+ F AA A+ Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFG--DVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94 Query: 563 TFNGQ 577 +G+ Sbjct: 95 EMDGK 99
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 45.1 bits (105), Expect = 2e-04 Identities = 22/71 (30%), Positives = 44/71 (61%) Frame = +2 Query: 371 DIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAE 550 D RS+++G+L Y ++E+ + F G + +V+I+R+K TG +G+G++ F++ + Sbjct: 285 DKRSVFVGNLPYKVEESAIEKHFLDCG--SIMAVRIVRDKMTGIGKGFGYVLFENTDSVH 342 Query: 551 YALGTFNGQMM 583 AL N ++M Sbjct: 343 LALKLNNSELM 353
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 45.1 bits (105), Expect = 2e-04 Identities = 21/64 (32%), Positives = 37/64 (57%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 SL++GDL+ + E +LY+ F+P+G V+S+++ R+ T GY ++ F A A+ Sbjct: 38 SLYVGDLEPSVSEAHLYDIFSPIG--SVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 95 Query: 560 GTFN 571 N Sbjct: 96 EQLN 99 Score = 38.1 bits (87), Expect = 0.021 Identities = 21/72 (29%), Positives = 41/72 (56%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +++I +L +D LY+ F+ G + S KI +++ G+ +G+GF+ F+ AA+ A+ Sbjct: 126 NIFIKNLHPDIDNKALYDTFSVFG--DILSSKIATDEN-GKSKGFGFVHFEEEGAAKEAI 182 Query: 560 GTFNGQMMPNVE 595 NG ++ E Sbjct: 183 DALNGMLLNGQE 194
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 45.1 bits (105), Expect = 2e-04 Identities = 24/85 (28%), Positives = 48/85 (56%) Frame = +2 Query: 368 EDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAA 547 +D +++GDL + + AFAP G +++ +++++ TG+ +GYGF+ F ++ A Sbjct: 103 QDHFHVFVGDLSPEITTEDIKAAFAPFG--RISDARVVKDMATGKSKGYGFVSFFNKWDA 160 Query: 548 EYALGTFNGQMMPNVETVFKLNWAS 622 E A+ GQ + + + NWA+ Sbjct: 161 ENAIQQMGGQWLGGRQ--IRTNWAT 183 Score = 37.7 bits (86), Expect = 0.028 Identities = 24/82 (29%), Positives = 42/82 (51%) Frame = +2 Query: 377 RSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYA 556 ++L++G+L + E + F+ +GP + + K+I + P Y F+EF A A Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCK--NCKMIMDTAGNDP--YCFVEFHEHRHAAAA 62 Query: 557 LGTFNGQMMPNVETVFKLNWAS 622 L NG+ + E K+NWA+ Sbjct: 63 LAAMNGRKIMGKEV--KVNWAT 82
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 45.1 bits (105), Expect = 2e-04 Identities = 23/80 (28%), Positives = 46/80 (57%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 +++GDL + + AFAP G +++ +++++ TG+ +GYGF+ F ++ AE A+ Sbjct: 108 VFVGDLSPQITTEDIKAAFAPFG--RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 165 Query: 563 TFNGQMMPNVETVFKLNWAS 622 GQ + + + NWA+ Sbjct: 166 QMGGQWLGGRQ--IRTNWAT 183 Score = 37.7 bits (86), Expect = 0.028 Identities = 24/82 (29%), Positives = 42/82 (51%) Frame = +2 Query: 377 RSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYA 556 ++L++G+L + E + F+ +GP + + K+I + P Y F+EF A A Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCK--NCKMIMDTAGNDP--YCFVEFHEHRHAAAA 62 Query: 557 LGTFNGQMMPNVETVFKLNWAS 622 L NG+ + E K+NWA+ Sbjct: 63 LAAMNGRKIMGKEV--KVNWAT 82
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 45.1 bits (105), Expect = 2e-04 Identities = 23/70 (32%), Positives = 44/70 (62%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++G+L +DE LY+ F+ +G Q V + ++ R+++ G+ +GYGF+ + S A+ A+ Sbjct: 100 NLFVGNLDPLVDERVLYDTFSALG-QLVKAPQVARDEN-GRSKGYGFVSYDSFETADAAI 157 Query: 560 GTFNGQMMPN 589 N Q + N Sbjct: 158 EAMNNQFLMN 167 Score = 31.6 bits (70), Expect = 2.0 Identities = 17/64 (26%), Positives = 31/64 (48%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 ++++G+L + ++ L+ GP V ++ I R++ G+GF EF EYA Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGP--VVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYAC 69 Query: 560 GTFN 571 N Sbjct: 70 QILN 73
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/70 (31%), Positives = 41/70 (58%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++G+L + D ++ FA G +V SV+I + T QP+G+G+++F + A+ AL Sbjct: 268 TLFLGNLSFNADRDAIFELFAKHG--EVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKAL 325 Query: 560 GTFNGQMMPN 589 G+ + N Sbjct: 326 DALQGEYIDN 335 Score = 40.4 bits (93), Expect = 0.004 Identities = 18/70 (25%), Positives = 41/70 (58%) Frame = +2 Query: 368 EDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAA 547 E+ ++++G L + +D+ +L F +G V ++I + T + GYG+++F++++ A Sbjct: 165 EEPATIFVGRLSWSIDDEWLKKEFEHIGG--VIGARVIYERGTDRSRGYGYVDFENKSYA 222 Query: 548 EYALGTFNGQ 577 E A+ G+ Sbjct: 223 EKAIQEMQGK 232
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/64 (34%), Positives = 36/64 (56%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 L++G L + + E L F P G ++ S++++ + TG+ +GYGFI F A+ AL Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFG--RIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309 Query: 563 TFNG 574 NG Sbjct: 310 QLNG 313
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/64 (34%), Positives = 36/64 (56%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 L++G L + + E L F P G ++ S++++ + TG+ +GYGFI F A+ AL Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFG--RIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309 Query: 563 TFNG 574 NG Sbjct: 310 QLNG 313
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 43.9 bits (102), Expect = 4e-04 Identities = 26/85 (30%), Positives = 44/85 (51%) Frame = +2 Query: 368 EDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAA 547 +D +L++GDL +D+ L NAF S ++ + TG GYGF+ F S+ A Sbjct: 158 DDTFNLFVGDLNVNVDDETLRNAFKDF--PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDA 215 Query: 548 EYALGTFNGQMMPNVETVFKLNWAS 622 + A+ + GQ + ++NWA+ Sbjct: 216 QNAMDSMQGQDLNG--RPLRINWAA 238 Score = 41.6 bits (96), Expect = 0.002 Identities = 26/81 (32%), Positives = 43/81 (53%) Frame = +2 Query: 377 RSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYA 556 R L++G+L + E L F GP + ++KI+ +K+ + Y F+E+ A A Sbjct: 74 RVLYVGNLDKAITEDILKQYFQVGGP--IANIKIMIDKNN-KNVNYAFVEYHQSHDANIA 130 Query: 557 LGTFNGQMMPNVETVFKLNWA 619 L T NG+ + N + K+NWA Sbjct: 131 LQTLNGKQIEN--NIVKINWA 149
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 43.5 bits (101), Expect = 5e-04 Identities = 22/70 (31%), Positives = 42/70 (60%) Frame = +2 Query: 371 DIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAE 550 D RS+++G++ + + + F G Q+ + ++ +++TG P+GYG+IEF+S A E Sbjct: 62 DSRSIFVGNITPDVTPEQIEDHFKDCG--QIKRITLLYDRNTGTPKGYGYIEFESPAYRE 119 Query: 551 YALGTFNGQM 580 AL G++ Sbjct: 120 KALQLNGGEL 129
>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34) Length = 293 Score = 43.5 bits (101), Expect = 5e-04 Identities = 21/66 (31%), Positives = 37/66 (56%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 +++ L +DET +++ F+ G VT ++ R+K TG +GY F+EF+S A+ Sbjct: 47 VYVRHLPNLLDETQIFSYFSQFGT--VTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAE 104 Query: 563 TFNGQM 580 T N + Sbjct: 105 TMNNYL 110
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 43.1 bits (100), Expect = 7e-04 Identities = 24/70 (34%), Positives = 41/70 (58%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 ++++G+L +DE LY+ F+ G + KI+R+ +G +G+ FI F S A++ AL Sbjct: 101 NIFVGNLDPEVDEKLLYDTFSAFG-VILQVPKIMRDVDSGTSKGFAFINFASFEASDTAL 159 Query: 560 GTFNGQMMPN 589 NGQ + N Sbjct: 160 EAMNGQFLCN 169 Score = 40.4 bits (93), Expect = 0.004 Identities = 19/64 (29%), Positives = 35/64 (54%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 ++++G L + E+ L+ GP V SV + +++ T +G+GF+EF A+YA+ Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGP--VVSVNMPKDRVTANHQGFGFVEFMGEEDADYAI 71 Query: 560 GTFN 571 N Sbjct: 72 KILN 75
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 43.1 bits (100), Expect = 7e-04 Identities = 22/60 (36%), Positives = 34/60 (56%) Frame = +2 Query: 410 MDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQMMPN 589 M + LY+ F +GP + + +I+R+ TG GYGF++F S A A A+ NG + N Sbjct: 89 MQDRELYSLFRTIGP--INTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRN 146 Score = 40.8 bits (94), Expect = 0.003 Identities = 21/64 (32%), Positives = 32/64 (50%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ +L + + L F G Q+ I+R+KHTG P G FI F R A+ A+ Sbjct: 165 NLYVTNLSRSITDEQLETIFGKYG--QIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAI 222 Query: 560 GTFN 571 N Sbjct: 223 SALN 226
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 43.1 bits (100), Expect = 7e-04 Identities = 26/72 (36%), Positives = 38/72 (52%) Frame = +2 Query: 368 EDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAA 547 +D +L+I +L MDE L N P G QV S +I+R+ +G G GF +S Sbjct: 138 QDPTNLYISNLPLSMDEQELENMLKPFG--QVISTRILRDS-SGTSRGVGFARMESTEKC 194 Query: 548 EYALGTFNGQMM 583 E +G FNG+ + Sbjct: 195 EAVIGHFNGKFI 206 Score = 34.3 bits (77), Expect = 0.31 Identities = 15/34 (44%), Positives = 24/34 (70%) Frame = +2 Query: 458 QVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 ++ S K I +K T + +GYGF++F S AAA+ A+ Sbjct: 87 KIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV 120
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 42.7 bits (99), Expect = 9e-04 Identities = 21/64 (32%), Positives = 35/64 (54%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 L++G L + + E L F P G ++ ++ ++++ TG+ +GYGFI F A AL Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFG--KIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 322 Query: 563 TFNG 574 NG Sbjct: 323 QLNG 326
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 42.7 bits (99), Expect = 9e-04 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 ++I +L +E L+ F P G Q SVKI+++ T Q +GYGF+ + A A+ Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQ--SVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIR 461 Query: 563 TFNGQMMPN--VETVFKLNWA 619 NG M N ++ FK N A Sbjct: 462 ALNGYTMGNRVLQVSFKTNKA 482 Score = 34.7 bits (78), Expect = 0.24 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 13/83 (15%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHT-------------GQPEGYGF 520 +L + L M E + + F+ VG ++ SVK+IR+K GQ GYGF Sbjct: 150 NLIVNYLPQTMTEDEIRSLFSSVG--EIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGF 207 Query: 521 IEFQSRAAAEYALGTFNGQMMPN 589 + + AE A+ NG + N Sbjct: 208 VNYVRPQDAEQAVNVLNGLRLQN 230 Score = 31.2 bits (69), Expect = 2.6 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNK-HTGQPEGYGFIEFQSRAAAEYA 556 +L++ L M + L FAP G + + +I++N + Q +G GFI F R A A Sbjct: 249 NLYVSGLPKTMTQQELEAIFAPFGA--IITSRILQNAGNDTQTKGVGFIRFDKREEATRA 306 Query: 557 LGTFNG 574 + NG Sbjct: 307 IIALNG 312
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 42.7 bits (99), Expect = 9e-04 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 ++I +L +E L+ F P G Q SVKI+++ T Q +GYGF+ + A A+ Sbjct: 440 IFIYNLAPETEEAALWQLFGPFGAVQ--SVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIR 497 Query: 563 TFNGQMMPN--VETVFKLNWA 619 NG M N ++ FK N A Sbjct: 498 ALNGYTMGNRVLQVSFKTNKA 518 Score = 34.7 bits (78), Expect = 0.24 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 13/83 (15%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHT-------------GQPEGYGF 520 +L + L M E + + F+ VG ++ SVK+IR+K GQ GYGF Sbjct: 186 NLIVNYLPQTMTEDEIRSLFSSVG--EIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGF 243 Query: 521 IEFQSRAAAEYALGTFNGQMMPN 589 + + AE A+ NG + N Sbjct: 244 VNYVRPQDAEQAVNVLNGLRLQN 266 Score = 31.2 bits (69), Expect = 2.6 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNK-HTGQPEGYGFIEFQSRAAAEYA 556 +L++ L M + L FAP G + + +I++N + Q +G GFI F R A A Sbjct: 285 NLYVSGLPKTMTQQELEAIFAPFGA--IITSRILQNAGNDTQTKGVGFIRFDKREEATRA 342 Query: 557 LGTFNG 574 + NG Sbjct: 343 IIALNG 348
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 42.7 bits (99), Expect = 9e-04 Identities = 23/64 (35%), Positives = 35/64 (54%) Frame = +2 Query: 386 WIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGT 565 ++G L + D+ L AFA G V KII ++ TG+ G+GF+ F+ A + A+ Sbjct: 11 FVGGLAWATDDRALETAFAQYG--DVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68 Query: 566 FNGQ 577 NGQ Sbjct: 69 MNGQ 72
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 42.7 bits (99), Expect = 9e-04 Identities = 25/72 (34%), Positives = 38/72 (52%) Frame = +2 Query: 368 EDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAA 547 +D +L+I +L MDE L N P G QV S +++R+ +G G GF +S Sbjct: 138 QDPTNLYISNLPLSMDEQELENMLKPFG--QVISTRVLRDS-SGASRGVGFARMESTEKC 194 Query: 548 EYALGTFNGQMM 583 E +G FNG+ + Sbjct: 195 EAVIGHFNGKFI 206 Score = 34.3 bits (77), Expect = 0.31 Identities = 15/34 (44%), Positives = 24/34 (70%) Frame = +2 Query: 458 QVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 ++ S K I +K T + +GYGF++F S AAA+ A+ Sbjct: 87 KIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAV 120
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 42.0 bits (97), Expect = 0.001 Identities = 22/66 (33%), Positives = 38/66 (57%) Frame = +2 Query: 377 RSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYA 556 R+L++G+L+ + E L+ F GP V VKI ++K G+P+ + F+ F+ + YA Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGP--VIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYA 66 Query: 557 LGTFNG 574 + NG Sbjct: 67 MNLLNG 72
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/66 (31%), Positives = 39/66 (59%) Frame = +2 Query: 377 RSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYA 556 R++++G+L+ + E LY F GP +T V I +++ G+P+ +GF+ F+ + YA Sbjct: 10 RTVFVGNLEARVREEILYELFLQAGP--LTKVTICKDRE-GKPKSFGFVCFKHPESVSYA 66 Query: 557 LGTFNG 574 + NG Sbjct: 67 IALLNG 72
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 42.0 bits (97), Expect = 0.001 Identities = 22/66 (33%), Positives = 38/66 (57%) Frame = +2 Query: 377 RSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYA 556 R+L++G+L+ + E L+ F GP V VKI ++K G+P+ + F+ F+ + YA Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGP--VIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYA 66 Query: 557 LGTFNG 574 + NG Sbjct: 67 MNLLNG 72
>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (Poly(A)-binding protein II) (PABII) Length = 166 Score = 41.6 bits (96), Expect = 0.002 Identities = 24/71 (33%), Positives = 39/71 (54%) Frame = +2 Query: 371 DIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAE 550 D +S+++G++ Y + L + FA G V V I+ +K TG P+G+ +IEF + Sbjct: 53 DAQSVYVGNVDYSVTPEELQSHFASCG--SVNRVTILCDKFTGHPKGFAYIEFSEPSLVP 110 Query: 551 YALGTFNGQMM 583 AL NG M+ Sbjct: 111 NAL-LLNGSML 120
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/67 (29%), Positives = 38/67 (56%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 L++G L + DE L + F+ GP ++ V +++++ T + G+GFI F + A A+ Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGP--ISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65 Query: 563 TFNGQMM 583 NG+ + Sbjct: 66 AMNGESL 72
>MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (mNIFK) Length = 317 Score = 41.6 bits (96), Expect = 0.002 Identities = 19/66 (28%), Positives = 37/66 (56%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 +++G L + E+++YN A G ++ ++ R+K TG +GY F+EF+S A+ Sbjct: 49 VYLGHLPSTLSESHIYNYCAQFG--DISRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAE 106 Query: 563 TFNGQM 580 T + + Sbjct: 107 TMDNYL 112
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/64 (32%), Positives = 36/64 (56%) Frame = +2 Query: 386 WIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGT 565 ++G L + DE L AF+ G ++ KII ++ TG+ G+GF+ F+ + + A+ Sbjct: 11 FVGGLAWATDERSLETAFSQFG--ELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68 Query: 566 FNGQ 577 NGQ Sbjct: 69 MNGQ 72
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 41.6 bits (96), Expect = 0.002 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%) Frame = +2 Query: 413 DETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQMMPN- 589 DE+ L+ F P G VT+VK+IR+ +T + +G+GF+ + A A+ + NG + + Sbjct: 288 DESILWQMFGPFGA--VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 345 Query: 590 -VETVFKLN 613 ++ FK N Sbjct: 346 VLQVSFKTN 354 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/55 (38%), Positives = 32/55 (58%) Frame = +2 Query: 410 MDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNG 574 M + L + F +G ++ S K++R+K TGQ GYGF+ + AE A+ T NG Sbjct: 50 MTQEELKSLFGSIG--EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102 Score = 37.4 bits (85), Expect = 0.037 Identities = 23/81 (28%), Positives = 39/81 (48%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ L M + L F+ G ++ + +I+ ++ TG G GFI F R AE A+ Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYG--RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 560 GTFNGQMMPNVETVFKLNWAS 622 NGQ P + +A+ Sbjct: 184 KGLNGQKPPGATEPITVKFAN 204
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 41.6 bits (96), Expect = 0.002 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%) Frame = +2 Query: 413 DETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQMMPN- 589 DE+ L+ F P G VT+VK+IR+ +T + +G+GF+ + A A+ + NG + + Sbjct: 288 DESILWQMFGPFGA--VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 345 Query: 590 -VETVFKLN 613 ++ FK N Sbjct: 346 VLQVSFKTN 354 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/55 (38%), Positives = 32/55 (58%) Frame = +2 Query: 410 MDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNG 574 M + L + F +G ++ S K++R+K TGQ GYGF+ + AE A+ T NG Sbjct: 50 MTQEELKSLFGSIG--EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102 Score = 37.4 bits (85), Expect = 0.037 Identities = 23/81 (28%), Positives = 39/81 (48%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ L M + L F+ G ++ + +I+ ++ TG G GFI F R AE A+ Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYG--RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 560 GTFNGQMMPNVETVFKLNWAS 622 NGQ P + +A+ Sbjct: 184 KGLNGQKPPGATEPITVKFAN 204
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 41.6 bits (96), Expect = 0.002 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%) Frame = +2 Query: 413 DETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQMMPN- 589 DE+ L+ F P G VT+VK+IR+ +T + +G+GF+ + A A+ + NG + + Sbjct: 288 DESILWQMFGPFGA--VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 345 Query: 590 -VETVFKLN 613 ++ FK N Sbjct: 346 VLQVSFKTN 354 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/55 (38%), Positives = 32/55 (58%) Frame = +2 Query: 410 MDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNG 574 M + L + F +G ++ S K++R+K TGQ GYGF+ + AE A+ T NG Sbjct: 50 MTQEELKSLFGSIG--EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102 Score = 37.4 bits (85), Expect = 0.037 Identities = 23/81 (28%), Positives = 39/81 (48%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ L M + L F+ G ++ + +I+ ++ TG G GFI F R AE A+ Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYG--RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 560 GTFNGQMMPNVETVFKLNWAS 622 NGQ P + +A+ Sbjct: 184 KGLNGQKPPGATEPITVKFAN 204
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 41.6 bits (96), Expect = 0.002 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%) Frame = +2 Query: 413 DETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQMMPN- 589 DE+ L+ F P G VT+VK+IR+ +T + +G+GF+ + A A+ + NG + + Sbjct: 289 DESILWQMFGPFGA--VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 346 Query: 590 -VETVFKLN 613 ++ FK N Sbjct: 347 VLQVSFKTN 355 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/55 (38%), Positives = 32/55 (58%) Frame = +2 Query: 410 MDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNG 574 M + L + F +G ++ S K++R+K TGQ GYGF+ + AE A+ T NG Sbjct: 50 MTQEELKSLFGSIG--EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102 Score = 37.4 bits (85), Expect = 0.037 Identities = 23/81 (28%), Positives = 39/81 (48%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ L M + L F+ G ++ + +I+ ++ TG G GFI F R AE A+ Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYG--RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 560 GTFNGQMMPNVETVFKLNWAS 622 NGQ P + +A+ Sbjct: 184 KGLNGQKPPGATEPITVKFAN 204
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 41.2 bits (95), Expect = 0.003 Identities = 22/64 (34%), Positives = 34/64 (53%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 L++G+L + +D L F G V V++I +K TG+ G+GF+ + A E A Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAG--NVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQ 158 Query: 563 TFNG 574 FNG Sbjct: 159 QFNG 162 Score = 40.0 bits (92), Expect = 0.006 Identities = 18/64 (28%), Positives = 37/64 (57%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 L++G+L + +D+ L N F G +V ++I ++ +G+ +G+GF+ S + A+ Sbjct: 259 LYVGNLSWGVDDMALENLFNEQG--KVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316 Query: 563 TFNG 574 + NG Sbjct: 317 SLNG 320
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 41.2 bits (95), Expect = 0.003 Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 ++I +L DE L+ F P G VT+VK+IR+ +T + +G+GF+ + A A+ Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGA--VTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIA 303 Query: 563 TFNGQMMPN--VETVFKLN 613 + NG + + ++ FK N Sbjct: 304 SLNGYRLGDKILQVSFKTN 322 Score = 40.4 bits (93), Expect = 0.004 Identities = 21/55 (38%), Positives = 32/55 (58%) Frame = +2 Query: 410 MDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNG 574 M + L + F+ +G +V S K+IR+K G GYGF+ + + AE A+ T NG Sbjct: 31 MTQDELRSLFSSIG--EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG 83
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 41.2 bits (95), Expect = 0.003 Identities = 21/64 (32%), Positives = 36/64 (56%) Frame = +2 Query: 386 WIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGT 565 ++G L + D+ L AF+ G +V KII ++ TG+ G+GF+ F+ + + A+ Sbjct: 11 FVGGLAWATDDRALETAFSQYG--EVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68 Query: 566 FNGQ 577 NGQ Sbjct: 69 MNGQ 72
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 40.8 bits (94), Expect = 0.003 Identities = 23/68 (33%), Positives = 39/68 (57%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 SL++GDL + E LY+AFA + +TSV++ ++ +G+ YG+ F SR A A+ Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEF--KSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAI 82 Query: 560 GTFNGQMM 583 N ++ Sbjct: 83 EKKNNSLL 90 Score = 31.6 bits (70), Expect = 2.0 Identities = 19/69 (27%), Positives = 40/69 (57%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 + ++++ ++ + E L F+ G +TS K++ ++ G+ +G+GF+ F + A Sbjct: 303 VSNIYVKNVNVAVTEEELRKHFSQCGT--ITSTKLMCDEK-GKSKGFGFVCFSTPEEAID 359 Query: 554 ALGTFNGQM 580 A+ TF+GQM Sbjct: 360 AVKTFHGQM 368 Score = 30.4 bits (67), Expect = 4.5 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +2 Query: 497 GQPEGYGFIEFQSRAAAEYALGTFNGQMMPNVE 595 G+ GYGF++F+ AA A+ T N ++ + E Sbjct: 149 GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKE 181
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 40.8 bits (94), Expect = 0.003 Identities = 20/67 (29%), Positives = 38/67 (56%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 L++G L + DE L + F+ GP ++ V +++++ T + G+GFI F + A A+ Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGP--ISEVVVVKDRETQRSRGFGFITFTNPEHASDAMR 65 Query: 563 TFNGQMM 583 NG+ + Sbjct: 66 AMNGESL 72
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 40.4 bits (93), Expect = 0.004 Identities = 21/55 (38%), Positives = 32/55 (58%) Frame = +2 Query: 410 MDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNG 574 M + L + F+ +G +V S K+IR+K G GYGF+ + + AE A+ T NG Sbjct: 31 MTQEELRSLFSSIG--EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNG 83 Score = 40.0 bits (92), Expect = 0.006 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 2/79 (2%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 ++I +L DE L+ F P G VT+VK+IR+ +T + +G+GF+ + + A+ Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGA--VTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIA 303 Query: 563 TFNGQMMPN--VETVFKLN 613 + NG + + ++ FK N Sbjct: 304 SLNGYRLGDKILQVSFKTN 322
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 40.4 bits (93), Expect = 0.004 Identities = 22/67 (32%), Positives = 36/67 (53%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 L++G L + E L + F G +V +++ R+K TG +GYGF+EF+ A+ Sbjct: 47 LYVGHLPRGLFEPQLKSYFEQFG--KVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAE 104 Query: 563 TFNGQMM 583 T N +M Sbjct: 105 TMNNYLM 111
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 40.0 bits (92), Expect = 0.006 Identities = 25/76 (32%), Positives = 41/76 (53%) Frame = +2 Query: 389 IGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTF 568 + +L M+E L + F +G +V + I R+K TG P+G+ F+ F+SR A A+ Sbjct: 180 VTNLPQEMNEDELRDLFGKIG--RVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAEL 237 Query: 569 NGQMMPNVETVFKLNW 616 N M ++ V K+ W Sbjct: 238 NDIRMYHM--VLKVEW 251
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 40.0 bits (92), Expect = 0.006 Identities = 17/67 (25%), Positives = 38/67 (56%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 +++G++ + +D+ L F+ G +V S +++ ++ TG+ G+GF+ S A A+ Sbjct: 232 IYVGNIPWGIDDARLEQLFSEHG--KVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIA 289 Query: 563 TFNGQMM 583 +GQ + Sbjct: 290 NLDGQSL 296
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 40.0 bits (92), Expect = 0.006 Identities = 22/64 (34%), Positives = 34/64 (53%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 L++G+L + +D L F G V V++I +K TG+ G+GF+ S + E A Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAG--NVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQ 150 Query: 563 TFNG 574 FNG Sbjct: 151 QFNG 154
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 40.0 bits (92), Expect = 0.006 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%) Frame = +2 Query: 413 DETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQMMPN- 589 DE+ L+ F P G V +VK+IR+ +T + +G+GF+ + A A+ + NG + + Sbjct: 314 DESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 371 Query: 590 -VETVFKLNWA 619 ++ FK N A Sbjct: 372 VLQVSFKTNKA 382 Score = 40.0 bits (92), Expect = 0.006 Identities = 20/55 (36%), Positives = 31/55 (56%) Frame = +2 Query: 410 MDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNG 574 M + + F +G ++ S K++R+K TGQ GYGF+ + AE A+ T NG Sbjct: 62 MTQEEFRSLFGSIG--EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 114 Score = 35.4 bits (80), Expect = 0.14 Identities = 21/66 (31%), Positives = 34/66 (51%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ L M + L F+ G ++ + +I+ ++ TG G GFI F R AE A+ Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYG--RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 195 Query: 560 GTFNGQ 577 NGQ Sbjct: 196 KGLNGQ 201
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 40.0 bits (92), Expect = 0.006 Identities = 20/64 (31%), Positives = 35/64 (54%) Frame = +2 Query: 386 WIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGT 565 ++G L + ++ L AF+ G +T KII ++ TG+ G+GF+ F+ + A+ Sbjct: 9 FVGGLAWATNDESLEQAFSQFG--DITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66 Query: 566 FNGQ 577 NGQ Sbjct: 67 MNGQ 70
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 40.0 bits (92), Expect = 0.006 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%) Frame = +2 Query: 413 DETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQMMPN- 589 DE+ L+ F P G V +VK+IR+ +T + +G+GF+ + A A+ + NG + + Sbjct: 302 DESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 359 Query: 590 -VETVFKLNWA 619 ++ FK N A Sbjct: 360 VLQVSFKTNKA 370 Score = 40.0 bits (92), Expect = 0.006 Identities = 20/55 (36%), Positives = 31/55 (56%) Frame = +2 Query: 410 MDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNG 574 M + + F +G ++ S K++R+K TGQ GYGF+ + AE A+ T NG Sbjct: 50 MTQEEFRSLFGSIG--EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102 Score = 35.4 bits (80), Expect = 0.14 Identities = 21/66 (31%), Positives = 34/66 (51%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ L M + L F+ G ++ + +I+ ++ TG G GFI F R AE A+ Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYG--RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183 Query: 560 GTFNGQ 577 NGQ Sbjct: 184 KGLNGQ 189
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 40.0 bits (92), Expect = 0.006 Identities = 23/69 (33%), Positives = 38/69 (55%) Frame = +2 Query: 368 EDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAA 547 ED++ L++G+L + +D L F G V V++I +K TG+ G+GF+ ++ Sbjct: 85 EDLK-LFVGNLPFSVDSAALAGLFERAG--NVEMVEVIYDKLTGRSRGFGFVTMSTKEEV 141 Query: 548 EYALGTFNG 574 E A FNG Sbjct: 142 EAAEQQFNG 150 Score = 37.4 bits (85), Expect = 0.037 Identities = 16/64 (25%), Positives = 35/64 (54%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 +++G+L + +D+ L F+ G V K++ ++ +G+ G+GF+ + S A+ Sbjct: 209 VYVGNLSWGVDDLALKELFSEQG--NVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAID 266 Query: 563 TFNG 574 + NG Sbjct: 267 SLNG 270
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 40.0 bits (92), Expect = 0.006 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%) Frame = +2 Query: 413 DETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQMMPN- 589 DE+ L+ F P G V +VK+IR+ +T + +G+GF+ + A A+ + NG + + Sbjct: 309 DESVLWQLFGPFGA--VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 366 Query: 590 -VETVFKLNWA 619 ++ FK N A Sbjct: 367 VLQVSFKTNKA 377 Score = 40.0 bits (92), Expect = 0.006 Identities = 20/55 (36%), Positives = 31/55 (56%) Frame = +2 Query: 410 MDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNG 574 M + + F +G ++ S K++R+K TGQ GYGF+ + AE A+ T NG Sbjct: 57 MTQEEFRSLFGSIG--EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 109 Score = 35.4 bits (80), Expect = 0.14 Identities = 21/66 (31%), Positives = 34/66 (51%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ L M + L F+ G ++ + +I+ ++ TG G GFI F R AE A+ Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYG--RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 190 Query: 560 GTFNGQ 577 NGQ Sbjct: 191 KGLNGQ 196
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 39.7 bits (91), Expect = 0.007 Identities = 21/64 (32%), Positives = 37/64 (57%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 +++ +L DE+ L+ F P G VT+VK+IR+ T + +G+GF+ + A A+ Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGA--VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIA 343 Query: 563 TFNG 574 + NG Sbjct: 344 SLNG 347 Score = 38.9 bits (89), Expect = 0.013 Identities = 19/55 (34%), Positives = 30/55 (54%) Frame = +2 Query: 410 MDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNG 574 M + + F +G + S K++R+K TGQ GYGF+ + A+ A+ T NG Sbjct: 50 MTQDEFKSLFGSIG--DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG 102 Score = 35.8 bits (81), Expect = 0.11 Identities = 20/66 (30%), Positives = 34/66 (51%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ L M + + F+ G ++ + +I+ ++ TG G GFI F R AE A+ Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYG--RIITSRILLDQATGVSRGVGFIRFDKRIEAEEAI 183 Query: 560 GTFNGQ 577 NGQ Sbjct: 184 KGLNGQ 189
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 39.7 bits (91), Expect = 0.007 Identities = 21/64 (32%), Positives = 37/64 (57%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 +++ +L DE+ L+ F P G VT+VK+IR+ T + +G+GF+ + A A+ Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGA--VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIA 343 Query: 563 TFNG 574 + NG Sbjct: 344 SLNG 347 Score = 38.9 bits (89), Expect = 0.013 Identities = 19/55 (34%), Positives = 30/55 (54%) Frame = +2 Query: 410 MDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNG 574 M + + F +G + S K++R+K TGQ GYGF+ + A+ A+ T NG Sbjct: 50 MTQDEFKSLFGSIG--DIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG 102 Score = 35.0 bits (79), Expect = 0.18 Identities = 20/66 (30%), Positives = 34/66 (51%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ L M + + F+ G ++ + +I+ ++ TG G GFI F R AE A+ Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYG--RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183 Query: 560 GTFNGQ 577 NGQ Sbjct: 184 KGLNGQ 189
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 39.3 bits (90), Expect = 0.010 Identities = 20/69 (28%), Positives = 39/69 (56%) Frame = +2 Query: 377 RSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYA 556 R +++G + Y E + + + VGP V ++K++ + TG+ +GY FIEF+ ++ A Sbjct: 18 RVVYLGSIPYDQTEEQILDLCSNVGP--VINLKMMFDPQTGRSKGYAFIEFRDLESSASA 75 Query: 557 LGTFNGQMM 583 + NG + Sbjct: 76 VRNLNGYQL 84
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 39.3 bits (90), Expect = 0.010 Identities = 24/76 (31%), Positives = 42/76 (55%) Frame = +2 Query: 377 RSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYA 556 +SL IG+L ++L++ + P+ S+K+I +K G+P GYGFI + + A Sbjct: 204 KSLSIGEL------SFLFSKYGPI-----LSMKLIYDKTKGEPNGYGFISYPLGSQASLC 252 Query: 557 LGTFNGQMMPNVETVF 604 + NG+ + N T+F Sbjct: 253 IKELNGRTV-NGSTLF 267
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 39.3 bits (90), Expect = 0.010 Identities = 21/64 (32%), Positives = 33/64 (51%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 +++G+L + D L F G V V++I +K TG+ G+GF+ S+ E A Sbjct: 89 IFVGNLPFSADSAALAELFERAG--NVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQ 146 Query: 563 TFNG 574 FNG Sbjct: 147 QFNG 150
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 39.3 bits (90), Expect = 0.010 Identities = 23/75 (30%), Positives = 43/75 (57%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +++I +L +D L+ F+ G + S K+ + TG+ +GYGF++F+ +A+ A+ Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGT--ILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAI 193 Query: 560 GTFNGQMMPNVETVF 604 NG +M N + VF Sbjct: 194 DKLNGMLM-NDKQVF 207 Score = 33.5 bits (75), Expect = 0.53 Identities = 21/68 (30%), Positives = 36/68 (52%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ +L +D+ L F+ G VTS K++ N G G+GF+ + + A AL Sbjct: 333 NLYLKNLDDSVDDEKLKEMFSEYG--NVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRAL 389 Query: 560 GTFNGQMM 583 NG+M+ Sbjct: 390 SEMNGKMI 397
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 38.9 bits (89), Expect = 0.013 Identities = 17/67 (25%), Positives = 38/67 (56%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 +++G+L + +D + L F+ G +V S +++ ++ TG+ G+GF+ S + A+ Sbjct: 151 VYVGNLPWDVDTSRLEQLFSEHG--KVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIA 208 Query: 563 TFNGQMM 583 +GQ + Sbjct: 209 ALDGQTL 215 Score = 36.2 bits (82), Expect = 0.081 Identities = 21/67 (31%), Positives = 33/67 (49%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 L++G+L Y +D L F G ++ V I N+ T + G+GF+ + AE A+ Sbjct: 57 LFVGNLPYDVDSEKLAGIFDAAGVVEIAEV--IYNRETDRSRGFGFVTMSTVEEAEKAVE 114 Query: 563 TFNGQMM 583 NG M Sbjct: 115 LLNGYDM 121
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 38.9 bits (89), Expect = 0.013 Identities = 20/64 (31%), Positives = 34/64 (53%) Frame = +2 Query: 386 WIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGT 565 ++G L + L NAFA G ++ K+I ++ TG+ G+GF+ F S + A+ Sbjct: 11 FVGGLAWATSNESLENAFASYG--EILDSKVITDRETGRSRGFGFVTFSSENSMLDAIEN 68 Query: 566 FNGQ 577 NG+ Sbjct: 69 MNGK 72
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 38.9 bits (89), Expect = 0.013 Identities = 20/64 (31%), Positives = 34/64 (53%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 SL++G+L + E L+ F +GP V S+++ R+ T + GY ++ F + E AL Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGP--VASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 138 Query: 560 GTFN 571 N Sbjct: 139 DELN 142 Score = 32.3 bits (72), Expect = 1.2 Identities = 19/68 (27%), Positives = 38/68 (55%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +++I +L +D L++ F+ G ++ S K+ ++ G +GYGF+ F S +A A+ Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFG--KILSCKVAVDE-LGNAKGYGFVHFDSVESANAAI 225 Query: 560 GTFNGQMM 583 NG ++ Sbjct: 226 EHVNGMLL 233
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 38.9 bits (89), Expect = 0.013 Identities = 21/64 (32%), Positives = 33/64 (51%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 +++G+L + D L F G V V++I +K TG+ G+GF+ S+ E A Sbjct: 89 IFVGNLLFSADSAALAELFERAG--NVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQ 146 Query: 563 TFNG 574 FNG Sbjct: 147 QFNG 150
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 38.5 bits (88), Expect = 0.016 Identities = 21/64 (32%), Positives = 34/64 (53%) Frame = +2 Query: 386 WIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGT 565 ++G L + + L AFA G QV K+I ++ TG+ G+GF+ F S + A+ Sbjct: 11 FVGGLAWATNNETLEQAFANFG--QVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68 Query: 566 FNGQ 577 NG+ Sbjct: 69 MNGK 72
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 38.5 bits (88), Expect = 0.016 Identities = 20/69 (28%), Positives = 39/69 (56%) Frame = +2 Query: 371 DIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAE 550 D L+IG L + +E L AF G +++ V +++++ T + G+GF+ F++ A+ Sbjct: 3 DEGKLFIGGLNFETNEDCLEQAFTKYG--RISEVVVVKDRETKRSRGFGFVTFENVDDAK 60 Query: 551 YALGTFNGQ 577 A+ NG+ Sbjct: 61 DAMMAMNGK 69
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 38.5 bits (88), Expect = 0.016 Identities = 16/67 (23%), Positives = 38/67 (56%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 +++G++ + +D+ L F+ G +V S +++ ++ +G+ G+GF+ S A A+ Sbjct: 193 IYVGNIPWDIDDARLEQVFSEHG--KVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIA 250 Query: 563 TFNGQMM 583 +GQ + Sbjct: 251 NLDGQTL 257
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 265 Score = 38.1 bits (87), Expect = 0.021 Identities = 21/66 (31%), Positives = 37/66 (56%) Frame = +2 Query: 377 RSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYA 556 R+L++G+L+ + E L+ F GP V VKI ++K G+ + + F+ F+ + YA Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGP--VIKVKIPKDKD-GKLKQFAFVNFKHEVSVPYA 66 Query: 557 LGTFNG 574 + NG Sbjct: 67 MNLLNG 72
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 38.1 bits (87), Expect = 0.021 Identities = 21/62 (33%), Positives = 34/62 (54%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 ++ L++G L+ DE L F G V SVK++ +K TG+ G+ F+EF A + Sbjct: 122 VKKLFVGGLKDNHDEECLREYFLQFG--NVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDK 179 Query: 554 AL 559 A+ Sbjct: 180 AI 181
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 38.1 bits (87), Expect = 0.021 Identities = 20/65 (30%), Positives = 36/65 (55%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 S+++G+L Y + E L FA G V V++ ++ TG+ G+GF+E ++ A A+ Sbjct: 2 SIYVGNLSYDVSEADLTAVFAEYG--SVKRVQLPTDRETGRMRGFGFVELEADAEETAAI 59 Query: 560 GTFNG 574 +G Sbjct: 60 EALDG 64
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 38.1 bits (87), Expect = 0.021 Identities = 21/69 (30%), Positives = 39/69 (56%) Frame = +2 Query: 368 EDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAA 547 ED++ L++G+L + +D L F G ++ V++I +K +G+ G+GF+ ++ Sbjct: 86 EDLK-LFVGNLPFSVDSAALAGLFERAGNVEI--VEVIYDKLSGRSRGFGFVTMSTKEEV 142 Query: 548 EYALGTFNG 574 E A FNG Sbjct: 143 EAAEQQFNG 151 Score = 37.4 bits (85), Expect = 0.037 Identities = 16/64 (25%), Positives = 35/64 (54%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 +++G+L + +D+ L F+ G V K++ ++ +G+ G+GF+ + S A+ Sbjct: 210 VYVGNLSWGVDDLALKELFSEQG--NVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAID 267 Query: 563 TFNG 574 + NG Sbjct: 268 SLNG 271
>IF34_YEAST (Q04067) Eukaryotic translation initiation factor 3 RNA-binding| subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 274 Score = 38.1 bits (87), Expect = 0.021 Identities = 20/61 (32%), Positives = 32/61 (52%) Frame = +2 Query: 437 FAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQMMPNVETVFKLNW 616 FAP+ V ++RNK TG+ G F+ F S AE AL +G+ N+ + ++ W Sbjct: 215 FAPI-----PRVSVVRNKETGKSRGLAFVTFSSEEVAEQALRFLDGRGYMNL--ILRVEW 267 Query: 617 A 619 + Sbjct: 268 S 268
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 38.1 bits (87), Expect = 0.021 Identities = 19/69 (27%), Positives = 39/69 (56%) Frame = +2 Query: 371 DIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAE 550 D L++G L + +E L F+ G Q++ V +++++ T + G+GF+ F++ A+ Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61 Query: 551 YALGTFNGQ 577 A+ NG+ Sbjct: 62 DAMMAMNGK 70
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 38.1 bits (87), Expect = 0.021 Identities = 19/69 (27%), Positives = 39/69 (56%) Frame = +2 Query: 371 DIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAE 550 D L++G L + +E L F+ G Q++ V +++++ T + G+GF+ F++ A+ Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61 Query: 551 YALGTFNGQ 577 A+ NG+ Sbjct: 62 DAMMAMNGK 70
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 38.1 bits (87), Expect = 0.021 Identities = 19/69 (27%), Positives = 39/69 (56%) Frame = +2 Query: 371 DIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAE 550 D L++G L + +E L F+ G Q++ V +++++ T + G+GF+ F++ A+ Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61 Query: 551 YALGTFNGQ 577 A+ NG+ Sbjct: 62 DAMMAMNGK 70
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 38.1 bits (87), Expect = 0.021 Identities = 19/69 (27%), Positives = 39/69 (56%) Frame = +2 Query: 371 DIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAE 550 D L++G L + +E L F+ G Q++ V +++++ T + G+GF+ F++ A+ Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61 Query: 551 YALGTFNGQ 577 A+ NG+ Sbjct: 62 DAMMAMNGK 70
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 38.1 bits (87), Expect = 0.021 Identities = 19/69 (27%), Positives = 39/69 (56%) Frame = +2 Query: 371 DIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAE 550 D L++G L + +E L F+ G Q++ V +++++ T + G+GF+ F++ A+ Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAK 61 Query: 551 YALGTFNGQ 577 A+ NG+ Sbjct: 62 DAMMAMNGK 70
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 37.7 bits (86), Expect = 0.028 Identities = 16/64 (25%), Positives = 38/64 (59%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 +++G L Y + E + F+ G ++ ++ ++R+K TG+ +G+ F+ ++ + + A+ Sbjct: 38 IFVGGLPYELTEGDIICVFSQYG--EIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVD 95 Query: 563 TFNG 574 FNG Sbjct: 96 NFNG 99
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 37.7 bits (86), Expect = 0.028 Identities = 20/52 (38%), Positives = 30/52 (57%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEF 529 ++ L++G L+ DE L F G Q+ SV I+ +K TG+ G+ FIEF Sbjct: 114 VKKLFVGGLRDDHDEECLREYFKDFG--QIVSVNIVSDKDTGKKRGFAFIEF 163
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 37.7 bits (86), Expect = 0.028 Identities = 18/67 (26%), Positives = 37/67 (55%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 +++G + + + E + AF P GP + S+ + + T + +G+ F+E++ A+ AL Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGP--IKSINMSWDPITQKHKGFAFVEYEIPEGAQLALE 189 Query: 563 TFNGQMM 583 NG +M Sbjct: 190 QMNGALM 196
>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) Length = 156 Score = 37.4 bits (85), Expect = 0.037 Identities = 21/79 (26%), Positives = 42/79 (53%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++G+L ++ E +Y F+ G + + + + K T G+ F+E+ SRA AE A+ Sbjct: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTAC--GFCFVEYYSRADAENAM 98 Query: 560 GTFNGQMMPNVETVFKLNW 616 NG + + + + +W Sbjct: 99 RYINGTRLD--DRIIRTDW 115
>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP-interacting protein 1) (NIP1) (Cell proliferation-inducing gene 55 protein) Length = 156 Score = 37.4 bits (85), Expect = 0.037 Identities = 21/79 (26%), Positives = 42/79 (53%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++G+L ++ E +Y F+ G + + + + K T G+ F+E+ SRA AE A+ Sbjct: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTAC--GFCFVEYYSRADAENAM 98 Query: 560 GTFNGQMMPNVETVFKLNW 616 NG + + + + +W Sbjct: 99 RYINGTRLD--DRIIRTDW 115
>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2| Length = 156 Score = 37.4 bits (85), Expect = 0.037 Identities = 21/79 (26%), Positives = 42/79 (53%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++G+L ++ E +Y F+ G + + + + K T G+ F+E+ SRA AE A+ Sbjct: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTAC--GFCFVEYYSRADAENAM 98 Query: 560 GTFNGQMMPNVETVFKLNW 616 NG + + + + +W Sbjct: 99 RYINGTRLD--DRIIRTDW 115
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 37.4 bits (85), Expect = 0.037 Identities = 17/69 (24%), Positives = 40/69 (57%) Frame = +2 Query: 368 EDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAA 547 +D +++G L Y + E + F+ G ++ ++ ++R+K TG+ +G+ F+ ++ + + Sbjct: 33 KDSAWIFLGGLPYELTEGDIICVFSQYG--EIVNINLVRDKKTGKSKGFCFLCYEDQRST 90 Query: 548 EYALGTFNG 574 A+ FNG Sbjct: 91 ILAVDNFNG 99
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 37.4 bits (85), Expect = 0.037 Identities = 19/60 (31%), Positives = 32/60 (53%) Frame = +2 Query: 410 MDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQMMPN 589 M + LY F +GP + + +I+R+ TG GY F++F S ++ A+ NG + N Sbjct: 138 MTDRELYALFRAIGP--INTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRN 195 Score = 33.5 bits (75), Expect = 0.53 Identities = 17/64 (26%), Positives = 31/64 (48%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ +L + + L F G + I+R+K TG+P G F+ + R A+ A+ Sbjct: 214 NLYVTNLPRTITDDQLDTIFGKYG--SIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAI 271 Query: 560 GTFN 571 N Sbjct: 272 SALN 275
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 37.4 bits (85), Expect = 0.037 Identities = 19/60 (31%), Positives = 32/60 (53%) Frame = +2 Query: 410 MDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQMMPN 589 M + LY F +GP + + +I+R+ TG GY F++F S ++ A+ NG + N Sbjct: 136 MTDRELYALFRAIGP--INTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRN 193 Score = 33.5 bits (75), Expect = 0.53 Identities = 17/64 (26%), Positives = 31/64 (48%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ +L + + L F G + I+R+K TG+P G F+ + R A+ A+ Sbjct: 212 NLYVTNLPRTITDDQLDTIFGKYG--SIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAI 269 Query: 560 GTFN 571 N Sbjct: 270 SALN 273
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 37.0 bits (84), Expect = 0.048 Identities = 18/60 (30%), Positives = 33/60 (55%) Frame = +2 Query: 410 MDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQMMPN 589 M + LY F +GP + + +I+R+ TG GY F++F + ++ A+ + NG + N Sbjct: 121 MTDRELYALFRTIGP--INTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRN 178 Score = 34.7 bits (78), Expect = 0.24 Identities = 18/64 (28%), Positives = 31/64 (48%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ +L + + L F G + I+R+K TG+P G F+ F R A+ A+ Sbjct: 197 NLYVTNLPRTITDDQLDTIFGKYG--MIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAI 254 Query: 560 GTFN 571 N Sbjct: 255 SALN 258
>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1| Length = 744 Score = 37.0 bits (84), Expect = 0.048 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 ++++G + MDET + + F G V VKII N+ TG +GYGF+ F + + + Sbjct: 371 TVFVGGIDARMDETEIGSCFGRYG--SVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIV 427 Query: 560 GT---FNGQMM 583 G+ F+G+ + Sbjct: 428 GSQIHFHGKKL 438 Score = 37.0 bits (84), Expect = 0.048 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 ++++G + MDET + + F G V VKII N+ TG +GYGF+ F + + + Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYG--SVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIV 262 Query: 560 GT---FNGQMM 583 G+ F+G+ + Sbjct: 263 GSQIHFHGKKL 273 Score = 37.0 bits (84), Expect = 0.048 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 ++++G + MDET + + F G V VKII N+ TG +GYGF+ F + + + Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYG--SVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIV 97 Query: 560 GT---FNGQMM 583 G+ F+G+ + Sbjct: 98 GSQIHFHGKKL 108
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 37.0 bits (84), Expect = 0.048 Identities = 23/75 (30%), Positives = 41/75 (54%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +++I +L +D LY F+ G + S K+ + G+ +GYGF++F+ A+ A+ Sbjct: 133 NVFIKNLDASIDNKALYETFSSFGT--ILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAI 189 Query: 560 GTFNGQMMPNVETVF 604 NG M+ N + VF Sbjct: 190 DKLNG-MLLNDKQVF 203 Score = 30.8 bits (68), Expect = 3.4 Identities = 19/68 (27%), Positives = 36/68 (52%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ +L +++ L F+ G VTS K++ N G G+GF+ + + A A+ Sbjct: 329 NLYLKNLDDSVNDEKLKEMFSEYG--NVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAM 385 Query: 560 GTFNGQMM 583 NG+M+ Sbjct: 386 KEMNGKMI 393
>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3| Length = 486 Score = 37.0 bits (84), Expect = 0.048 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 ++++G + MDET + + F G V VKII N+ TG +GYGF+ F + + + Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYG--SVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIV 97 Query: 560 GT---FNGQMM 583 G+ F+G+ + Sbjct: 98 GSQIHFHGKKL 108
>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2| Length = 558 Score = 37.0 bits (84), Expect = 0.048 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 ++++G + MDET + + F G V VKII N+ TG +GYGF+ F + + + Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYG--SVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIV 97 Query: 560 GT---FNGQMM 583 G+ F+G+ + Sbjct: 98 GSQIHFHGKKL 108
>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4| Length = 579 Score = 37.0 bits (84), Expect = 0.048 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 ++++G + MDET + + F G V VKII N+ TG +GYGF+ F + + + Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYG--SVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIV 262 Query: 560 GT---FNGQMM 583 G+ F+G+ + Sbjct: 263 GSQIHFHGKKL 273 Score = 37.0 bits (84), Expect = 0.048 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 ++++G + MDET + + F G V VKII N+ TG +GYGF+ F + + + Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYG--SVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIV 97 Query: 560 GT---FNGQMM 583 G+ F+G+ + Sbjct: 98 GSQIHFHGKKL 108
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 36.6 bits (83), Expect = 0.062 Identities = 19/60 (31%), Positives = 32/60 (53%) Frame = +2 Query: 410 MDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQMMPN 589 M + LY F GP + + +I+++ TG GY F++F S A+ A+ + NG + N Sbjct: 96 MTDRELYALFRTCGP--INTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRN 153 Score = 34.7 bits (78), Expect = 0.24 Identities = 18/64 (28%), Positives = 31/64 (48%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ +L + + L F G + I+R+K TG+P G F+ F R A+ A+ Sbjct: 172 NLYVTNLPRTITDDELEKIFGKYG--NIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAI 229 Query: 560 GTFN 571 N Sbjct: 230 SALN 233
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 36.6 bits (83), Expect = 0.062 Identities = 18/64 (28%), Positives = 34/64 (53%) Frame = +2 Query: 386 WIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGT 565 ++G L + + L F+ G +V KII ++ TG+ G+GF+ F+ + + A+ Sbjct: 9 FVGGLAWATGDAELERTFSQFG--EVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66 Query: 566 FNGQ 577 NG+ Sbjct: 67 MNGK 70
>RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) Length = 448 Score = 36.6 bits (83), Expect = 0.062 Identities = 17/55 (30%), Positives = 32/55 (58%) Frame = +2 Query: 368 EDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQ 532 + R+L+I + Y E+ L F GP + + +I ++ +G+P+GY FIE++ Sbjct: 99 DPFRTLFIARINYDTSESKLRREFEFYGP--IKKIVLIHDQESGKPKGYAFIEYE 151
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 36.2 bits (82), Expect = 0.081 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTS-VKIIRNKHTGQPEGYGFIEFQSRAAAEYA 556 S+++GDL + E+ L+ F + TS KI+ ++ TG +GYGF++F + + A Sbjct: 164 SIFVGDLAPNVTESQLFELF--INRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLA 221 Query: 557 LGTFNG 574 L G Sbjct: 222 LSEMQG 227
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 36.2 bits (82), Expect = 0.081 Identities = 16/52 (30%), Positives = 30/52 (57%) Frame = +2 Query: 377 RSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQ 532 ++L++ + Y E+ L F GP + + ++ NK +G+P GY FIE++ Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGP--IKRIHMVYNKRSGKPRGYAFIEYE 152
>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 276 Score = 36.2 bits (82), Expect = 0.081 Identities = 19/66 (28%), Positives = 34/66 (51%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 ++IG + + E L F+ G VT +++ R+K TG +GY ++EF+ A+ Sbjct: 43 IYIGHIPRALYEPQLREYFSQFGT--VTRLRLSRSKKTGNSKGYAYVEFECDEVAKIVAD 100 Query: 563 TFNGQM 580 T N + Sbjct: 101 TMNNYL 106
>CPSF6_MOUSE (Q6NVF9) Cleavage and polyadenylation specificity factor 6| Length = 551 Score = 36.2 bits (82), Expect = 0.081 Identities = 15/57 (26%), Positives = 30/57 (52%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAE 550 +L+IG+L +W + L A +G + +K N+ GQ +G+ + S A+++ Sbjct: 82 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSK 138
>CPSF6_HUMAN (Q16630) Cleavage and polyadenylation specificity factor 6| (Cleavage and polyadenylation specificity factor 68 kDa subunit) (CPSF 68 kDa subunit) (Pre-mRNA cleavage factor Im 68-kDa subunit) (Protein HPBRII-4/7) Length = 551 Score = 36.2 bits (82), Expect = 0.081 Identities = 15/57 (26%), Positives = 30/57 (52%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAE 550 +L+IG+L +W + L A +G + +K N+ GQ +G+ + S A+++ Sbjct: 82 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSK 138
>CPSF6_CHICK (Q5ZL34) Cleavage and polyadenylation specificity factor 6| Length = 551 Score = 36.2 bits (82), Expect = 0.081 Identities = 15/57 (26%), Positives = 30/57 (52%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAE 550 +L+IG+L +W + L A +G + +K N+ GQ +G+ + S A+++ Sbjct: 82 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSK 138
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 36.2 bits (82), Expect = 0.081 Identities = 18/68 (26%), Positives = 40/68 (58%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +++I +L +D L++ F+ G + S K+ + +GQ +GYGF+++ + +A+ A+ Sbjct: 125 NIFIKNLDESIDHKALHDTFSSFG--NIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAI 181 Query: 560 GTFNGQMM 583 NG ++ Sbjct: 182 EKLNGMLL 189 Score = 32.3 bits (72), Expect = 1.2 Identities = 20/68 (29%), Positives = 38/68 (55%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ +L + + L F+P G VTS K++R+ + G +G GF+ F + A A+ Sbjct: 319 NLYVKNLDPSISDEKLKEIFSPFGT--VTSSKVMRDPN-GTSKGSGFVAFATPEEATEAM 375 Query: 560 GTFNGQMM 583 +G+M+ Sbjct: 376 SQLSGKMI 383 Score = 30.4 bits (67), Expect = 4.5 Identities = 17/57 (29%), Positives = 32/57 (56%) Frame = +2 Query: 425 LYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQMMPNVE 595 L NAF G ++TS ++++ G+ +G+GF+ F++ A A+ + NG + E Sbjct: 231 LKNAFGEYG--KITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKE 284
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 36.2 bits (82), Expect = 0.081 Identities = 19/58 (32%), Positives = 29/58 (50%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYA 556 +++G L Y + L F G + +I ++ TG+ GYGF+ RAAAE A Sbjct: 13 IFVGGLPYHTTDASLRKYFEGFG--DIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 35.8 bits (81), Expect = 0.11 Identities = 19/63 (30%), Positives = 33/63 (52%) Frame = +2 Query: 371 DIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAE 550 D RS+++G++ Y L F G V V I+ +K +G P+G+ +IEF + + Sbjct: 165 DARSIYVGNVDYGATAEELEAHFHGCG--SVNRVTILCDKFSGHPKGFAYIEFSDKESVR 222 Query: 551 YAL 559 +L Sbjct: 223 TSL 225
>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic| region Length = 220 Score = 35.8 bits (81), Expect = 0.11 Identities = 20/67 (29%), Positives = 33/67 (49%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 +++ L + E L FA G + V++ RNK TG YGF+EF ++ A A Sbjct: 93 IYVSRLPHGFHEKELSKYFAQFG--DLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQE 150 Query: 563 TFNGQMM 583 + N ++ Sbjct: 151 SMNNYLL 157
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 35.8 bits (81), Expect = 0.11 Identities = 21/65 (32%), Positives = 36/65 (55%) Frame = +2 Query: 377 RSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYA 556 ++L + +L Y E L F ++ TS+K+ +N G+P+GY F+EF + A+ A Sbjct: 461 KTLIVNNLSYAASEETLQELF-----KKATSIKMPQNNQ-GRPKGYAFVEFPTAEDAKEA 514 Query: 557 LGTFN 571 L + N Sbjct: 515 LNSCN 519
>HSH49_YEAST (Q99181) Protein HSH49| Length = 213 Score = 35.8 bits (81), Expect = 0.11 Identities = 18/64 (28%), Positives = 35/64 (54%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 ++++G++ + + LY F + P V +K ++K +GY FIEF ++ A+YA+ Sbjct: 10 TVYVGNIDPRITKEQLYELFIQINP--VLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYAI 67 Query: 560 GTFN 571 N Sbjct: 68 KIMN 71
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 35.8 bits (81), Expect = 0.11 Identities = 20/61 (32%), Positives = 35/61 (57%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 ++ L++G L+ + E L F+ G V +II +K +G+ G+GF+ FQ+ AA+ Sbjct: 97 VKKLFVGGLKGDVAEGDLIEHFSQFGT--VEKAEIIADKQSGKKRGFGFVYFQNHDAADK 154 Query: 554 A 556 A Sbjct: 155 A 155
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 35.8 bits (81), Expect = 0.11 Identities = 19/63 (30%), Positives = 33/63 (52%) Frame = +2 Query: 371 DIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAE 550 D RS+++G++ Y L F G V V I+ +K +G P+G+ +IEF + + Sbjct: 169 DARSIYVGNVDYGATAEELEAHFHGCG--SVNRVTILCDKFSGHPKGFAYIEFSDKESVR 226 Query: 551 YAL 559 +L Sbjct: 227 TSL 229
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 35.8 bits (81), Expect = 0.11 Identities = 19/63 (30%), Positives = 33/63 (52%) Frame = +2 Query: 371 DIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAE 550 D RS+++G++ Y L F G V V I+ +K +G P+G+ +IEF + + Sbjct: 169 DARSIYVGNVDYGATAEELEAHFHGCG--SVNRVTILCDKFSGHPKGFAYIEFSDKESVR 226 Query: 551 YAL 559 +L Sbjct: 227 TSL 229
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 35.8 bits (81), Expect = 0.11 Identities = 22/65 (33%), Positives = 36/65 (55%) Frame = +2 Query: 377 RSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYA 556 ++L + +L Y + L F ++ T +K+ +N H G+P+GY FIEF S A+ A Sbjct: 486 KTLVLSNLSYSATKETLEEVF-----EKATFIKVPQNPH-GKPKGYAFIEFASFEDAKEA 539 Query: 557 LGTFN 571 L + N Sbjct: 540 LNSCN 544
>CPSF6_XENLA (Q6DDW4) Cleavage and polyadenylation specificity factor 6| Length = 548 Score = 35.8 bits (81), Expect = 0.11 Identities = 15/57 (26%), Positives = 31/57 (54%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAE 550 +L+IG+L +W + L +A +G + +K N+ GQ +G+ I S ++++ Sbjct: 82 ALYIGNLTWWTTDEDLTDAVHSLGVNDILEIKFFENRANGQSKGFALICVSSESSSK 138
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 35.8 bits (81), Expect = 0.11 Identities = 21/63 (33%), Positives = 33/63 (52%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 L++ +L + + L +AFA S K+I ++ +G+ G+GFI F S A AL Sbjct: 219 LYVANLSWALTSQGLRDAFAD--QPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALD 276 Query: 563 TFN 571 T N Sbjct: 277 TMN 279
>CPSF6_BRARE (Q6NWC6) Cleavage and polyadenylation specificity factor 6| Length = 545 Score = 35.8 bits (81), Expect = 0.11 Identities = 14/48 (29%), Positives = 26/48 (54%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFI 523 +L+IG+L +W + L +A +G V +K N+ GQ +G+ + Sbjct: 82 ALYIGNLTWWTTDEDLTDAIRSIGINDVLEIKFFENRANGQSKGFALV 129
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 35.4 bits (80), Expect = 0.14 Identities = 21/60 (35%), Positives = 34/60 (56%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L+I LQ + L P G ++ S K I +K T + +GYGF++F S +AA+ A+ Sbjct: 57 NLYIRGLQPGTTDQDLVKLCQPYG--KIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAV 114
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 35.4 bits (80), Expect = 0.14 Identities = 20/50 (40%), Positives = 31/50 (62%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEF 529 ++++G + MDET + + FA G V VKII ++ TG +GYGF+ F Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYG--SVKEVKIITDR-TGVSKGYGFVSF 87
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 35.4 bits (80), Expect = 0.14 Identities = 15/60 (25%), Positives = 37/60 (61%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 ++++G L + +D+ +L F G + ++I + +G+ +GYG+++F++ AA+ A+ Sbjct: 264 TVFVGRLSWNVDDQWLGQEFEEYGT--IVGARVIMDGQSGRSKGYGYVDFETPEAAKAAV 321
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 35.4 bits (80), Expect = 0.14 Identities = 20/50 (40%), Positives = 31/50 (62%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEF 529 ++++G + MDET + + FA G V VKII ++ TG +GYGF+ F Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYG--SVKEVKIITDR-TGVSKGYGFVSF 87
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 35.4 bits (80), Expect = 0.14 Identities = 20/50 (40%), Positives = 31/50 (62%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEF 529 ++++G + MDET + + FA G V VKII ++ TG +GYGF+ F Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYG--SVKEVKIITDR-TGVSKGYGFVSF 87
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 35.0 bits (79), Expect = 0.18 Identities = 20/50 (40%), Positives = 30/50 (60%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEF 529 ++++G + MDET + FA G V VKII ++ TG +GYGF+ F Sbjct: 41 TVFVGGIDVRMDETEIRGFFARYG--SVKEVKIITDR-TGVSKGYGFVSF 87
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 35.0 bits (79), Expect = 0.18 Identities = 18/58 (31%), Positives = 29/58 (50%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYA 556 +++G L Y + L F G + +I ++ TG+ GYGF+ RAAA+ A Sbjct: 34 IFVGGLPYHTTDASLRKYFEGFG--DIEEAVVITDRQTGKSRGYGFVTMADRAAADRA 89
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 35.0 bits (79), Expect = 0.18 Identities = 18/64 (28%), Positives = 33/64 (51%) Frame = +2 Query: 386 WIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGT 565 ++G L + ++ L F+ G V KII ++ +G+ G+GF+ F+ A A+ Sbjct: 9 FVGGLAWATNDEDLQRTFSQFG--DVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66 Query: 566 FNGQ 577 NG+ Sbjct: 67 MNGK 70
>NOP12_SCHPO (O13741) Nucleolar protein 12| Length = 438 Score = 34.7 bits (78), Expect = 0.24 Identities = 20/75 (26%), Positives = 39/75 (52%) Frame = +2 Query: 377 RSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYA 556 R +++G+L + +E L+ F G + V+I+R+ T +G+ +I+F+ + A Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCG--SIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKA 327 Query: 557 LGTFNGQMMPNVETV 601 L N + MP T+ Sbjct: 328 L-LLNEKKMPEGRTL 341
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 34.7 bits (78), Expect = 0.24 Identities = 18/64 (28%), Positives = 31/64 (48%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++ +L + + L F G + I+R+K TG+P G F+ F R A+ A+ Sbjct: 189 NLYVTNLPRTITDDELEKIFGKYG--NIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAI 246 Query: 560 GTFN 571 N Sbjct: 247 SALN 250
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 34.7 bits (78), Expect = 0.24 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 12/50 (24%) Frame = +2 Query: 509 GYGFIEFQSRAAAEYALG------------TFNGQMMPNVETVFKLNWAS 622 GY F+EF+++ A++AL T N Q P + F+LNWAS Sbjct: 129 GYCFVEFETQKDAKFALSLNATPLPNFYSPTTNSQTNPTFKRTFRLNWAS 178
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 34.7 bits (78), Expect = 0.24 Identities = 22/65 (33%), Positives = 35/65 (53%) Frame = +2 Query: 377 RSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYA 556 ++L + +L Y E L F ++ T +K+ +N H G+ +GY FIEF S A+ A Sbjct: 488 KTLVLSNLSYSATEETLQEVF-----EKATFIKVPQNPH-GKSKGYAFIEFASFEDAKEA 541 Query: 557 LGTFN 571 L + N Sbjct: 542 LNSCN 546
>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1| Length = 476 Score = 34.3 bits (77), Expect = 0.31 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Frame = +2 Query: 407 WMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQMM- 583 + E+ L F+P G + + ++R+KHT + +G F++F + A A+ +GQ + Sbjct: 35 YTSESVLREHFSPFG--DIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLG 92 Query: 584 PN 589 PN Sbjct: 93 PN 94
>DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 34.3 bits (77), Expect = 0.31 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Frame = +2 Query: 416 ETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQMM-PN 589 E+ L F+P G + + ++R+KHT + +G F++F + A A+ +GQ + PN Sbjct: 38 ESVLRERFSPFG--DIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPN 94
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 34.3 bits (77), Expect = 0.31 Identities = 15/52 (28%), Positives = 30/52 (57%) Frame = +2 Query: 377 RSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQ 532 ++L++ + Y E+ L F GP + + ++ +K +G+P GY FIE++ Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGP--IKRIHMVYSKRSGKPRGYAFIEYE 152
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 34.3 bits (77), Expect = 0.31 Identities = 15/52 (28%), Positives = 30/52 (57%) Frame = +2 Query: 377 RSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQ 532 ++L++ + Y E+ L F GP + + ++ +K +G+P GY FIE++ Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGP--IKRIHMVYSKRSGKPRGYAFIEYE 152
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 34.3 bits (77), Expect = 0.31 Identities = 20/60 (33%), Positives = 34/60 (56%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L+I LQ + L P G ++ S K I +K T + +GYGF++F S ++A+ A+ Sbjct: 59 NLYIRGLQPGTTDQDLVKLCQPYG--KIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAV 116
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 34.3 bits (77), Expect = 0.31 Identities = 18/67 (26%), Positives = 34/67 (50%) Frame = +2 Query: 377 RSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYA 556 ++L++ L Y E+ + F GP + V ++ ++ T +P+GY FIE+ + A Sbjct: 138 KTLFVSRLNYESSESKIKREFESYGP--IKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAA 195 Query: 557 LGTFNGQ 577 +GQ Sbjct: 196 YKQADGQ 202
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 33.9 bits (76), Expect = 0.40 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKI---IRNKHTGQPEGYGFIEFQSRAAAE 550 S+++ +L + L +AF + V VK+ +NK G+GF+EF S+ AAE Sbjct: 606 SVFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSKEAAE 665 Query: 551 YALGTFNGQMMPNVETVFKLN 613 A +G ++ + K++ Sbjct: 666 IAQKAMDGHVLDGHKLQLKIS 686
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 33.9 bits (76), Expect = 0.40 Identities = 20/83 (24%), Positives = 43/83 (51%) Frame = +2 Query: 371 DIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAE 550 D R++++ L + LY+ F GP V +I+R+K +G+ +G ++EF + + Sbjct: 238 DRRTVFVSQLANRLTSRELYDFFEQAGP--VRDAQIVRDKISGRSKGVAYVEFCHEDSVQ 295 Query: 551 YALGTFNGQMMPNVETVFKLNWA 619 A+ +G+ + + + +L A Sbjct: 296 AAI-ALSGKRLLGLPVIVQLTEA 317
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 33.9 bits (76), Expect = 0.40 Identities = 18/61 (29%), Positives = 33/61 (54%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 ++IG L + E L F G VT +KI+++ TG+ G+GF+ F+ ++ + + Sbjct: 161 MFIGGLNWDTTEDNLREYFGKYGT--VTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK 218 Query: 563 T 565 T Sbjct: 219 T 219
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 33.9 bits (76), Expect = 0.40 Identities = 19/67 (28%), Positives = 35/67 (52%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 L+IG L +E L F G ++ V +++++ T + G+ F+ F+S A A+ A Sbjct: 10 LFIGGLNTETNEKALEAVFGKYG--RIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67 Query: 563 TFNGQMM 583 NG+ + Sbjct: 68 DMNGKSL 74
>RBPMS_HUMAN (Q93062) RNA-binding protein with multiple splicing (RBP-MS)| Length = 196 Score = 33.5 bits (75), Expect = 0.53 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%) Frame = +2 Query: 368 EDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAA 547 E++R+L++ L + LY F P + + +K+ QP GF+ F SR+ A Sbjct: 21 EEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK----QP--VGFVSFDSRSEA 74 Query: 548 EYALGTFNG-QMMPNVETVFKLNWA 619 E A NG + P + +L +A Sbjct: 75 EAAKNALNGIRFDPEIPQTLRLEFA 99
>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 33.5 bits (75), Expect = 0.53 Identities = 17/61 (27%), Positives = 32/61 (52%) Frame = +2 Query: 416 ETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQMMPNVE 595 E L F+P G + + ++R+KHT + +G F++F + A A+ +GQ + + Sbjct: 38 ELVLRERFSPFG--DIQDIWVVRDKHTKESKGVAFVKFARSSQACRAMEEMHGQCLGPSD 95 Query: 596 T 598 T Sbjct: 96 T 96
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 33.5 bits (75), Expect = 0.53 Identities = 18/67 (26%), Positives = 34/67 (50%) Frame = +2 Query: 371 DIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAE 550 D R++++G L + E L NAF P G + +++ + + + G+ FIE++ A Sbjct: 4 DKRTIYVGGLADEVTERLLNNAFIPFG--DIADIQMPADYESQRHRGFAFIEYEQSEDAA 61 Query: 551 YALGTFN 571 A+ N Sbjct: 62 AAIDNMN 68
>CPSF7_RAT (Q5XI29) Cleavage and polyadenylation specificity factor 7| Length = 462 Score = 33.5 bits (75), Expect = 0.53 Identities = 14/68 (20%), Positives = 29/68 (42%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 ++++G +W + L +G V +K N+ GQ +GY + S + L Sbjct: 83 AVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLL 142 Query: 560 GTFNGQMM 583 G+++ Sbjct: 143 ELLPGKVL 150
>CPSF7_MOUSE (Q8BTV2) Cleavage and polyadenylation specificity factor 7| Length = 471 Score = 33.5 bits (75), Expect = 0.53 Identities = 14/68 (20%), Positives = 29/68 (42%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 ++++G +W + L +G V +K N+ GQ +GY + S + L Sbjct: 83 AVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLL 142 Query: 560 GTFNGQMM 583 G+++ Sbjct: 143 ELLPGKVL 150
>CPSF7_HUMAN (Q8N684) Cleavage and polyadenylation specificity factor 7| (Cleavage and polyadenylation specificity factor 59 kDa subunit) (CPSF 59 kDa subunit) (Pre-mRNA cleavage factor Im 59-kDa subunit) Length = 471 Score = 33.5 bits (75), Expect = 0.53 Identities = 14/68 (20%), Positives = 29/68 (42%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 ++++G +W + L +G V +K N+ GQ +GY + S + L Sbjct: 83 AVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLL 142 Query: 560 GTFNGQMM 583 G+++ Sbjct: 143 ELLPGKVL 150
>RB15B_MOUSE (Q6PHZ5) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 564 Score = 33.1 bits (74), Expect = 0.69 Identities = 20/69 (28%), Positives = 35/69 (50%) Frame = +2 Query: 377 RSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYA 556 R+L+IG+L + + E L AF G + +I+ GQ Y F++FQ+ A A Sbjct: 10 RNLFIGNLDHSVSEVELRRAFEKYG---IIEEVVIKRPARGQGGAYAFLKFQNLDMAHRA 66 Query: 557 LGTFNGQMM 583 +G+++ Sbjct: 67 KVAMSGRVI 75
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 33.1 bits (74), Expect = 0.69 Identities = 17/51 (33%), Positives = 29/51 (56%) Frame = +2 Query: 425 LYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQ 577 L++AF+ G +V KII ++ T + G+GF+ F + A A+ NG+ Sbjct: 3 LHSAFSTYG--EVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGK 51
>RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 563 Score = 33.1 bits (74), Expect = 0.69 Identities = 20/69 (28%), Positives = 35/69 (50%) Frame = +2 Query: 377 RSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYA 556 R+L+IG+L + + E L AF G + +I+ GQ Y F++FQ+ A A Sbjct: 10 RNLFIGNLDHSVSEVELRRAFEKYG---IIEEVVIKRPARGQGGAYAFLKFQNLDMAHRA 66 Query: 557 LGTFNGQMM 583 +G+++ Sbjct: 67 KVAMSGRVI 75
>RBPMS_MOUSE (Q9WVB0) RNA-binding protein with multiple splicing (RBP-MS)| (HEart, RRM Expressed Sequence) (Hermes) Length = 197 Score = 32.7 bits (73), Expect = 0.90 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%) Frame = +2 Query: 368 EDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAA 547 E++R+L++ L + LY F P + + +K+ QP GF+ F SR+ A Sbjct: 21 EEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK----QP--VGFVSFDSRSEA 74 Query: 548 EYALGTFNG-QMMPNVETVFKLNWA 619 E A NG + P + ++ +A Sbjct: 75 EAAKNALNGIRFDPEIPQTLRIEFA 99
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 32.7 bits (73), Expect = 0.90 Identities = 16/45 (35%), Positives = 28/45 (62%) Frame = +2 Query: 449 GPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQMM 583 GP +T VKI+R+++ G+ +GFI +++ A A+ FNG + Sbjct: 39 GPDLITDVKILRDRN-GESRRFGFIGYRNEEDAFDAVEYFNGSFI 82
>RBPMS_CHICK (Q9W6I1) RNA-binding protein with multiple splicing homolog| (RBP-MS) (HEart, RRM Expressed Sequence) (Hermes) Length = 200 Score = 32.7 bits (73), Expect = 0.90 Identities = 22/69 (31%), Positives = 33/69 (47%) Frame = +2 Query: 368 EDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAA 547 E++R+L++ L + LY F P + + +K+ QP GF+ F SRA A Sbjct: 19 EEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK----QP--VGFVTFDSRAGA 72 Query: 548 EYALGTFNG 574 E A NG Sbjct: 73 EAAKNALNG 81
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 32.7 bits (73), Expect = 0.90 Identities = 21/65 (32%), Positives = 36/65 (55%) Frame = +2 Query: 377 RSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYA 556 ++L + +L Y E L F ++ T +K+ +N++ G+ +GY FIEF S A+ A Sbjct: 487 KTLVLSNLSYSATEETLQEVF-----EKATFIKVPQNQN-GKSKGYAFIEFASFEDAKEA 540 Query: 557 LGTFN 571 L + N Sbjct: 541 LNSCN 545
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 32.7 bits (73), Expect = 0.90 Identities = 21/65 (32%), Positives = 36/65 (55%) Frame = +2 Query: 377 RSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYA 556 ++L + +L Y E L F ++ T +K+ +N++ G+ +GY FIEF S A+ A Sbjct: 486 KTLVLSNLSYSATEETLQEVF-----EKATFIKVPQNQN-GKSKGYAFIEFASFEDAKEA 539 Query: 557 LGTFN 571 L + N Sbjct: 540 LNSCN 544
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 32.7 bits (73), Expect = 0.90 Identities = 21/65 (32%), Positives = 36/65 (55%) Frame = +2 Query: 377 RSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYA 556 ++L + +L Y E L F ++ T +K+ +N++ G+ +GY FIEF S A+ A Sbjct: 485 KTLVLSNLSYSATEETLQEVF-----EKATFIKVPQNQN-GKSKGYAFIEFASFEDAKEA 538 Query: 557 LGTFN 571 L + N Sbjct: 539 LNSCN 543
>PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 504 Score = 32.3 bits (72), Expect = 1.2 Identities = 14/33 (42%), Positives = 21/33 (63%) Frame = +2 Query: 458 QVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYA 556 ++ S +++R+K +G Y FIEF R AAE A Sbjct: 271 KILSCEVVRDKKSGDSLQYAFIEFDEREAAEQA 303
>PGRP_BOVIN (Q8SPP7) Peptidoglycan recognition protein precursor (Peptidoglycan| recognition protein short) (PGRP-S) (Oligosaccharide-binding protein) (OBP) Length = 190 Score = 32.3 bits (72), Expect = 1.2 Identities = 14/23 (60%), Positives = 16/23 (69%) Frame = +1 Query: 430 QRLCACGAAAGYLSENYPQQTHR 498 Q L ACGAA GYL+ NY + HR Sbjct: 143 QSLLACGAARGYLTPNYEVKGHR 165
>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 459 Score = 32.3 bits (72), Expect = 1.2 Identities = 17/49 (34%), Positives = 27/49 (55%) Frame = +2 Query: 437 FAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQMM 583 F+ GP + S ++IR+K TG Y FIEF+++ E A G ++ Sbjct: 268 FSRFGP--ILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKMQGVLI 314
>PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 32.3 bits (72), Expect = 1.2 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = +2 Query: 458 QVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQMM 583 ++ S ++IR+K TG Y FIEF+S+ E A G ++ Sbjct: 273 KILSCEVIRDKRTGDSLQYAFIEFESQKDCEQAYFKMQGVLI 314
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 32.3 bits (72), Expect = 1.2 Identities = 21/65 (32%), Positives = 35/65 (53%) Frame = +2 Query: 377 RSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYA 556 ++L + +L Y E L F ++ T +K+ +N+ G+ +GY FIEF S A+ A Sbjct: 485 KTLVLSNLSYSATEETLQEVF-----EKATFIKVPQNQQ-GKSKGYAFIEFASFEDAKEA 538 Query: 557 LGTFN 571 L + N Sbjct: 539 LNSCN 543
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 32.0 bits (71), Expect = 1.5 Identities = 19/59 (32%), Positives = 32/59 (54%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +++G + + +E L F+ G V VKI+ N G +GYGFI F+++ A+ L Sbjct: 35 IFVGGIDFKTNENDLRKFFSQYG--SVKEVKIV-NDRAGVSKGYGFITFETQEDAQKIL 90
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 32.0 bits (71), Expect = 1.5 Identities = 18/59 (30%), Positives = 33/59 (55%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +++G + + +E+ L F+ G V VKI+ N G +GYGF+ F+++ A+ L Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYG--SVKEVKIV-NDRAGVSKGYGFVTFETQEDAQKIL 90
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 32.0 bits (71), Expect = 1.5 Identities = 18/59 (30%), Positives = 33/59 (55%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +++G + + +E+ L F+ G V VKI+ N G +GYGF+ F+++ A+ L Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYG--SVKEVKIV-NDRAGVSKGYGFVTFETQEDAQKIL 90
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 32.0 bits (71), Expect = 1.5 Identities = 15/65 (23%), Positives = 33/65 (50%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 +++G+L + +D L F+ G +V +++ ++ TG+ G+GF+ A+ Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHG--KVVEARVVYDRETGRSRGFGFVTMSDVDELNEAIS 303 Query: 563 TFNGQ 577 +GQ Sbjct: 304 ALDGQ 308
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 32.0 bits (71), Expect = 1.5 Identities = 19/64 (29%), Positives = 32/64 (50%) Frame = +2 Query: 368 EDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAA 547 ED +++G L + + L + F G +V I + +TG+ G+GFI F+ A+ Sbjct: 65 EDAGKMFVGGLSWDTSKKDLKDYFTKFG--EVVDCTIKMDPNTGRSRGFGFILFKDAASV 122 Query: 548 EYAL 559 E L Sbjct: 123 EKVL 126
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 32.0 bits (71), Expect = 1.5 Identities = 15/52 (28%), Positives = 29/52 (55%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEF 529 ++ L++G L+ DE + + F G + + I+ +K TG+ G+ F+EF Sbjct: 121 VKKLFVGALKDDHDEQSIRDYFQHFG--NIVDINIVIDKETGKKRGFAFVEF 170
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24| Length = 369 Score = 32.0 bits (71), Expect = 1.5 Identities = 15/49 (30%), Positives = 30/49 (61%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEF 529 L++G+L + + L F VG Q+ V+++ + TG+ +G+GF++F Sbjct: 230 LFVGNLDFETTDADLKEHFGQVG--QIRRVRLMTFEDTGKCKGFGFVDF 276
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 32.0 bits (71), Expect = 1.5 Identities = 17/67 (25%), Positives = 34/67 (50%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 L+IG L +E L F G ++ + +++++ T + G+ F+ F+S A A+ Sbjct: 10 LFIGGLNTETNEKALEAVFGKYG--RIVEILLMKDRETNKSRGFAFVTFESPADAKDVAR 67 Query: 563 TFNGQMM 583 NG+ + Sbjct: 68 DMNGKSL 74
>RBPMS_XENLA (Q9YGP5) RNA-binding protein with multiple splicing homolog| (RBP-MS) (HEart, RRM Expressed Sequence) (Hermes) Length = 196 Score = 31.6 bits (70), Expect = 2.0 Identities = 21/69 (30%), Positives = 33/69 (47%) Frame = +2 Query: 368 EDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAA 547 E++R+L++ L + LY F P + + +K+ QP GF+ F +RA A Sbjct: 17 EEVRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSK----QP--VGFVTFDNRAGA 70 Query: 548 EYALGTFNG 574 E A NG Sbjct: 71 EAAKNALNG 79
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 31.6 bits (70), Expect = 2.0 Identities = 15/72 (20%), Positives = 33/72 (45%) Frame = +2 Query: 368 EDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAA 547 + L+IG L ++++ + GP + + ++++ TG +GY F E+ Sbjct: 256 DSAHKLFIGGLPNYLNDDQVKELLTSFGP--LKAFNLVKDSATGLSKGYAFCEYVDINVT 313 Query: 548 EYALGTFNGQMM 583 + A+ NG + Sbjct: 314 DQAIAGLNGMQL 325
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 31.6 bits (70), Expect = 2.0 Identities = 15/72 (20%), Positives = 33/72 (45%) Frame = +2 Query: 368 EDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAA 547 + L+IG L ++++ + GP + + ++++ TG +GY F E+ Sbjct: 256 DSAHKLFIGGLPNYLNDDQVKELLTSFGP--LKAFNLVKDSATGLSKGYAFCEYVDINVT 313 Query: 548 EYALGTFNGQMM 583 + A+ NG + Sbjct: 314 DQAIAGLNGMQL 325
>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 496 Score = 31.6 bits (70), Expect = 2.0 Identities = 18/85 (21%), Positives = 36/85 (42%) Frame = +2 Query: 368 EDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAA 547 + ++IG L ++ E + GP + S+ + G +GY F E+ Sbjct: 288 DSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNV---DSQGNSKGYAFAEYLDPTLT 344 Query: 548 EYALGTFNGQMMPNVETVFKLNWAS 622 + A+ NG + + + V +L A+ Sbjct: 345 DQAIAGLNGMQLGDKQLVVQLACAN 369
>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 488 Score = 31.6 bits (70), Expect = 2.0 Identities = 18/85 (21%), Positives = 36/85 (42%) Frame = +2 Query: 368 EDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAA 547 + ++IG L ++ E + GP + S+ + G +GY F E+ Sbjct: 279 DSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNV---DSQGNSKGYAFAEYLDPTLT 335 Query: 548 EYALGTFNGQMMPNVETVFKLNWAS 622 + A+ NG + + + V +L A+ Sbjct: 336 DQAIAGLNGMQLGDKQLVVQLACAN 360
>RBP1_DROME (Q02427) RNA-binding protein 1| Length = 144 Score = 31.6 bits (70), Expect = 2.0 Identities = 20/64 (31%), Positives = 33/64 (51%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 +++G+L + + AFA GP + +V + RN P G+ F+EF+ R AE A Sbjct: 13 VYVGNLGSSASKHEIEGAFAKYGP--LRNVWVARN-----PPGFAFVEFEDRRDAEDATR 65 Query: 563 TFNG 574 +G Sbjct: 66 ALDG 69
>PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-binding protein| crp79) (Poly(A)-binding protein) (PABP) (Meiotic expression up-regulated protein 5) Length = 710 Score = 31.6 bits (70), Expect = 2.0 Identities = 18/56 (32%), Positives = 30/56 (53%) Frame = +2 Query: 416 ETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQMM 583 ++ L + F+P G + S + ++G +GYGF+ F+ AA A T NG M+ Sbjct: 397 KSQLEDLFSPFG--SILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMV 450
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 31.6 bits (70), Expect = 2.0 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 5/76 (6%) Frame = +2 Query: 371 DIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQS----- 535 + + L++ +L Y E L + F P G Q+ V + +K T P+G+ +I+F Sbjct: 321 ETKRLFLRNLTYSCAEDDLKSLFGPFG--QLEQVHMPIDKKTNNPKGFAYIDFHDADDAV 378 Query: 536 RAAAEYALGTFNGQMM 583 RA E F G+++ Sbjct: 379 RAYLELDAKPFQGRLL 394
>RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 31.2 bits (69), Expect = 2.6 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Frame = +2 Query: 377 RSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHT---GQPEGYGFIEFQ 532 ++L++ + Y E+ L F GP + + I+ NK + G+P GY FIE++ Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGP--IKRIHIVYNKGSEGSGKPRGYAFIEYE 155
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 31.2 bits (69), Expect = 2.6 Identities = 18/65 (27%), Positives = 32/65 (49%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L+I L + L F P G V S K+ +K T + +GF+ + + +A+ A+ Sbjct: 402 NLFIYHLPQEFGDQDLLQMFMPFG--NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI 459 Query: 560 GTFNG 574 + NG Sbjct: 460 QSMNG 464
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 31.2 bits (69), Expect = 2.6 Identities = 18/65 (27%), Positives = 32/65 (49%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L+I L + L F P G V S K+ +K T + +GF+ + + +A+ A+ Sbjct: 402 NLFIYHLPQEFGDQDLLQMFMPFG--NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI 459 Query: 560 GTFNG 574 + NG Sbjct: 460 QSMNG 464
>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)| (PPIase cyp6) (Rotamase cyp8) Length = 432 Score = 30.8 bits (68), Expect = 3.4 Identities = 13/33 (39%), Positives = 21/33 (63%) Frame = +2 Query: 458 QVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYA 556 ++ S ++IR+K TG Y FIEF ++ + E A Sbjct: 269 KIISCQVIRDKETGDSLQYAFIEFDNKESVEKA 301
>PPIL4_GIBZE (Q4IE79) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 605 Score = 30.8 bits (68), Expect = 3.4 Identities = 13/42 (30%), Positives = 25/42 (59%) Frame = +2 Query: 458 QVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQMM 583 ++ S ++IR++ TG Y FIE++ +A+ E A G ++ Sbjct: 276 KILSCEVIRDQKTGDSLQYAFIEYEDKASCEAAYFKMQGVLI 317
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 30.8 bits (68), Expect = 3.4 Identities = 18/64 (28%), Positives = 32/64 (50%) Frame = +2 Query: 368 EDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAA 547 ED +++G L + + L + F G +V I + +TG+ G+GFI F+ ++ Sbjct: 72 EDAGKMFVGGLSWDTSKKDLKDYFTKFG--EVVDCTIKMDPNTGRSRGFGFILFKDSSSV 129 Query: 548 EYAL 559 E L Sbjct: 130 EKVL 133
>RBM10_RAT (P70501) RNA-binding protein 10 (RNA-binding motif protein 10)| (S1-1 protein) Length = 852 Score = 30.8 bits (68), Expect = 3.4 Identities = 11/24 (45%), Positives = 17/24 (70%) Frame = +2 Query: 458 QVTSVKIIRNKHTGQPEGYGFIEF 529 Q V+++RNK +GQ G+ F+EF Sbjct: 78 QAREVRLMRNKSSGQSRGFAFVEF 101
>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 30.8 bits (68), Expect = 3.4 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = +2 Query: 461 VTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQMM 583 + S ++IR+K TG Y FIEF+++ E A G ++ Sbjct: 274 ILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKMQGVLI 314
>RBM10_HUMAN (P98175) RNA-binding protein 10 (RNA-binding motif protein 10)| (DXS8237E) Length = 929 Score = 30.8 bits (68), Expect = 3.4 Identities = 11/24 (45%), Positives = 17/24 (70%) Frame = +2 Query: 458 QVTSVKIIRNKHTGQPEGYGFIEF 529 Q V+++RNK +GQ G+ F+EF Sbjct: 155 QAREVRLMRNKSSGQSRGFAFVEF 178
>NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 kDa nuclear cap| binding protein) (NCBP 20 kDa subunit) (CBP20) (Fragment) Length = 148 Score = 30.8 bits (68), Expect = 3.4 Identities = 18/79 (22%), Positives = 41/79 (51%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +L++G+L ++ E ++ F+ G + + + + K T G+ F+E+ +RA A A+ Sbjct: 33 TLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTAC--GFCFVEYYTRADAGTAM 90 Query: 560 GTFNGQMMPNVETVFKLNW 616 NG + + + + +W Sbjct: 91 RFINGTRLD--DRIVRTDW 107
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 30.8 bits (68), Expect = 3.4 Identities = 15/69 (21%), Positives = 37/69 (53%) Frame = +2 Query: 368 EDIRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAA 547 +D ++IG+L + E + F+ G V + R+++TG+ +G+ +++++ + + Sbjct: 28 KDNAYIYIGNLNRELTEGDILTVFSEYGVP--VDVILSRDENTGESQGFAYLKYEDQRST 85 Query: 548 EYALGTFNG 574 A+ NG Sbjct: 86 ILAVDNLNG 94
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 30.8 bits (68), Expect = 3.4 Identities = 20/81 (24%), Positives = 44/81 (54%), Gaps = 3/81 (3%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRN-KHTGQP--EGYGFIEFQSRAAAE 550 ++++ +L + L + F P+ V +VK + K++G+ G+GF+EF+++ A Sbjct: 618 AVFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQAN 677 Query: 551 YALGTFNGQMMPNVETVFKLN 613 A+ T +G ++ + KL+ Sbjct: 678 VAISTLDGHVLDGHKLQLKLS 698
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 30.4 bits (67), Expect = 4.5 Identities = 17/59 (28%), Positives = 30/59 (50%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +++G + + ET L F G VT V +I + +P G+GFI F+ + + A+ Sbjct: 115 IFVGGIPHNCGETELREYFKKFGV--VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 30.4 bits (67), Expect = 4.5 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRN-KHTGQP--EGYGFIEFQSRAAAE 550 +L+I +L + L AF P+ +K + K+ GQ G+GF +F+++A A+ Sbjct: 593 TLFIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPGQTLSMGFGFADFKTKAQAQ 652 Query: 551 YALGTFNG 574 AL NG Sbjct: 653 AALAVMNG 660
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 30.4 bits (67), Expect = 4.5 Identities = 17/65 (26%), Positives = 34/65 (52%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 ++I +L + E + P G + S ++I+N G +G+ F EF++ + AE A+ Sbjct: 312 IYISNLPLNLGEDQVVELLKPFG--DLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAIS 369 Query: 563 TFNGQ 577 +G+ Sbjct: 370 GLDGK 374
>TIE2_BRARE (O73791) Tyrosine-protein kinase receptor Tie-2 precursor (EC| 2.7.10.1) Length = 1116 Score = 30.4 bits (67), Expect = 4.5 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -3 Query: 451 PHRRKGVVEVGLIHPVLKISNPQRPDILASG 359 PHRR VV L+ P L+ S+ Q D+L G Sbjct: 795 PHRRSAVVSRSLVFPALQWSDIQFQDVLGEG 825
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 30.4 bits (67), Expect = 4.5 Identities = 17/59 (28%), Positives = 30/59 (50%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +++G + + ET L F G VT V +I + +P G+GFI F+ + + A+ Sbjct: 115 IFVGGIPHNCGETELREYFKKFGV--VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171
>SRP1_SCHPO (Q10193) Pre-mRNA-splicing factor srp1| Length = 275 Score = 30.0 bits (66), Expect = 5.8 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 +R+L++ + M L F P GP + I R + T +P + F+E++ AE Sbjct: 6 LRTLYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTR-TSRP--FAFVEYEDSRDAED 62 Query: 554 ALGTFNGQMMPNVETVFKLNWA 619 A +G+ + V ++ WA Sbjct: 63 AYYEVHGRRLERGGGVLRVEWA 84
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 30.0 bits (66), Expect = 5.8 Identities = 20/60 (33%), Positives = 32/60 (53%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 SL + +L ++ L AF+ G Q +V I+ ++ G+P G G +EF + AA AL Sbjct: 154 SLTVRNLPQYVSNELLEEAFSVFG-QVERAVVIVDDR--GRPSGKGIVEFSGKPAARKAL 210
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 30.0 bits (66), Expect = 5.8 Identities = 20/60 (33%), Positives = 32/60 (53%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 SL + +L ++ L AF+ G Q +V I+ ++ G+P G G +EF + AA AL Sbjct: 149 SLTVRNLPQYVSNELLEEAFSVFG-QVERAVVIVDDR--GRPSGKGIVEFSGKPAARKAL 205
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 30.0 bits (66), Expect = 5.8 Identities = 20/60 (33%), Positives = 32/60 (53%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 SL + +L ++ L AF+ G Q +V I+ ++ G+P G G +EF + AA AL Sbjct: 149 SLTVRNLPQYVSNELLEEAFSVFG-QVERAVVIVDDR--GRPSGKGIVEFSGKPAARKAL 205
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 30.0 bits (66), Expect = 5.8 Identities = 20/60 (33%), Positives = 32/60 (53%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 SL + +L ++ L AF+ G Q +V I+ ++ G+P G G +EF + AA AL Sbjct: 151 SLTVRNLPQYVSNELLEEAFSVFG-QVERAVVIVDDR--GRPSGKGIVEFSGKPAARKAL 207
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 30.0 bits (66), Expect = 5.8 Identities = 16/65 (24%), Positives = 34/65 (52%) Frame = +2 Query: 389 IGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTF 568 +G+L + + E L + F + VTS++++ + T + G+G++EF++ AL Sbjct: 98 VGNLSFDLTENDLGDFFG----EGVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALS 153 Query: 569 NGQMM 583 +M Sbjct: 154 GEDLM 158
>CYC_ISSOR (P00041) Cytochrome c| Length = 109 Score = 30.0 bits (66), Expect = 5.8 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Frame = +2 Query: 449 GPQQV-TSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFN 571 GP +V ++ I ++H+GQ EGY + + RA E+A T + Sbjct: 30 GPHKVGPNLHGIFSRHSGQAEGYSYTDANKRAGVEWAEPTMS 71
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)| Length = 289 Score = 29.6 bits (65), Expect = 7.6 Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = +2 Query: 380 SLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEF 529 ++++G + M+E + + F G V VKII ++ TG +GYGF+ F Sbjct: 37 TVFVGGIDIRMNEAEIRSYFEQYGT--VKEVKIITDR-TGVSKGYGFVSF 83
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 29.6 bits (65), Expect = 7.6 Identities = 17/59 (28%), Positives = 30/59 (50%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYAL 559 +++G + + ET L F G VT V +I + +P G+GFI F+ + + A+ Sbjct: 116 IFVGGIPHNCGETELKEYFNRFGV--VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 172
>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) Length = 174 Score = 29.6 bits (65), Expect = 7.6 Identities = 14/54 (25%), Positives = 31/54 (57%) Frame = +2 Query: 416 ETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQ 577 E +++ FA G ++ ++ + ++ TG +GY +E+++ A+ A+ NGQ Sbjct: 86 EEDIHDKFAEYG--EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ 137
>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) (RNA-binding protein Y14) (Binder of OVCA1-1) (BOV-1) Length = 174 Score = 29.6 bits (65), Expect = 7.6 Identities = 14/54 (25%), Positives = 31/54 (57%) Frame = +2 Query: 416 ETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALGTFNGQ 577 E +++ FA G ++ ++ + ++ TG +GY +E+++ A+ A+ NGQ Sbjct: 86 EEDIHDKFAEYG--EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ 137
>ORB2_DROME (Q9VSR3) Probable RNA-binding protein orb2| Length = 704 Score = 29.6 bits (65), Expect = 7.6 Identities = 16/58 (27%), Positives = 28/58 (48%) Frame = +2 Query: 377 RSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAE 550 R +++G L +DE + +F GP V +K P+GY F+ FQ ++ + Sbjct: 447 RKVFVGGLPPDIDEDEITTSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDESSVQ 504
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 29.3 bits (64), Expect = 10.0 Identities = 18/70 (25%), Positives = 32/70 (45%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 ++ L++ +L E + F + P V VK IR+ Y F+ F +R A Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD--------YAFVHFSNREDAVE 281 Query: 554 ALGTFNGQMM 583 A+ NG+++ Sbjct: 282 AMKALNGKVL 291
>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 494 Score = 29.3 bits (64), Expect = 10.0 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = +2 Query: 458 QVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYA 556 ++ S ++IR++ TG Y FIEF+ + + E A Sbjct: 278 KILSCEVIRDQKTGDSLQYAFIEFEDKKSCEEA 310
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 29.3 bits (64), Expect = 10.0 Identities = 17/61 (27%), Positives = 31/61 (50%) Frame = +2 Query: 377 RSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYA 556 R++++G+L + E + + F+ GP +K+ +P GY F+EF AE A Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKV-----PPRPPGYAFVEFDDARDAEDA 61 Query: 557 L 559 + Sbjct: 62 I 62
>SFRS3_MOUSE (P84104) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) (X16 protein) Length = 164 Score = 29.3 bits (64), Expect = 10.0 Identities = 20/67 (29%), Positives = 35/67 (52%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 +++G+L ++T L AF GP + SV + RN P G+ F+EF+ A A+ Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGP--LRSVWVARN-----PPGFAFVEFEDPRDAADAVR 64 Query: 563 TFNGQMM 583 +G+ + Sbjct: 65 ELDGRTL 71
>SFRS3_HUMAN (P84103) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) Length = 164 Score = 29.3 bits (64), Expect = 10.0 Identities = 20/67 (29%), Positives = 35/67 (52%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 +++G+L ++T L AF GP + SV + RN P G+ F+EF+ A A+ Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGP--LRSVWVARN-----PPGFAFVEFEDPRDAADAVR 64 Query: 563 TFNGQMM 583 +G+ + Sbjct: 65 ELDGRTL 71
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 29.3 bits (64), Expect = 10.0 Identities = 18/70 (25%), Positives = 32/70 (45%) Frame = +2 Query: 374 IRSLWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEY 553 ++ L++ +L E + F + P V VK IR+ Y F+ F +R A Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD--------YAFVHFSNREDAVE 281 Query: 554 ALGTFNGQMM 583 A+ NG+++ Sbjct: 282 AMKALNGKVL 291
>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor| 9G8) Length = 238 Score = 29.3 bits (64), Expect = 10.0 Identities = 20/67 (29%), Positives = 36/67 (53%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 +++G+L + L AF+ GP + +V I RN P G+ F+EF+ AE A+ Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGP--LRTVWIARN-----PPGFAFVEFEDPRDAEDAVR 65 Query: 563 TFNGQMM 583 +G+++ Sbjct: 66 GLDGKVI 72
>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7| Length = 267 Score = 29.3 bits (64), Expect = 10.0 Identities = 20/67 (29%), Positives = 36/67 (53%) Frame = +2 Query: 383 LWIGDLQYWMDETYLYNAFAPVGPQQVTSVKIIRNKHTGQPEGYGFIEFQSRAAAEYALG 562 +++G+L + L AF+ GP + +V I RN P G+ F+EF+ AE A+ Sbjct: 42 VYVGNLGTGAGKGELERAFSYYGP--LRTVWIARN-----PPGFAFVEFEDPRDAEDAVR 94 Query: 563 TFNGQMM 583 +G+++ Sbjct: 95 GLDGKVI 101 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,790,104 Number of Sequences: 219361 Number of extensions: 951710 Number of successful extensions: 3468 Number of sequences better than 10.0: 233 Number of HSP's better than 10.0 without gapping: 3203 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3458 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5767334219 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
