ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart46c07 |
|---|---|
| Clone Library Name | barley_pub |
>PLC_LISMO (P34024) 1-phosphatidylinositol phosphodiesterase precursor (EC| 4.6.1.13) (Phosphatidylinositol diacylglycerol-lyase) (Phosphatidylinositol-specific phospholipase C) (PI-PLC) Length = 317 Score = 52.4 bits (124), Expect = 1e-06 Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Frame = +3 Query: 381 KTWMAELGPERLRVHQVVWPGTHNSATAEIGVPF-VTRPFAQCQSLSVYDQLATGCRLLD 557 K WM+ L P+ + + PGTH++ + + + +T+P AQ Q++S+Y QL G R +D Sbjct: 46 KQWMSAL-PDTTNLAALSIPGTHDTMSYNGDITWTLTKPLAQTQTMSLYQQLEAGIRYID 104 Query: 558 VRVQKDRRVCHGPL 599 +R + + + HGP+ Sbjct: 105 IRAKDNLNIYHGPI 118
>GA2L2_HUMAN (Q8NHY3) GAS2-like protein 2 (Growth arrest-specific 2-like 2)| (GAS2-related protein on chromosome 17) (GAR17 protein) Length = 880 Score = 34.3 bits (77), Expect = 0.29 Identities = 15/35 (42%), Positives = 23/35 (65%) Frame = -3 Query: 421 TRSRSGPSSAIHVLRSAGRWPDPGKSWPEADRRLA 317 TRS P S +++ R AG+WP+PG + +A + LA Sbjct: 625 TRSGVIPRSGVYIPRLAGQWPEPGGPYDKAIQELA 659
>GA2L2_MOUSE (Q5SSG4) GAS2-like protein 2 (Growth arrest-specific 2-like 2)| Length = 860 Score = 33.1 bits (74), Expect = 0.65 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = -3 Query: 421 TRSRSGPSSAIHVLRSAGRWPDPGKSWPEADRRL 320 TRS++ P S ++V GRWP+PG + + R L Sbjct: 610 TRSQAIPRSGVYVPSLGGRWPEPGGPYDKVIREL 643
>PLC_BACTU (P08954) 1-phosphatidylinositol phosphodiesterase precursor (EC| 4.6.1.13) (Phosphatidylinositol diacylglycerol-lyase) (Phosphatidylinositol-specific phospholipase C) (PI-PLC) Length = 329 Score = 32.3 bits (72), Expect = 1.1 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 4/75 (5%) Frame = +3 Query: 387 WMAELGPERLRVHQVVWPGTHNSATAEIGVPFVTRPFAQCQSLSVYDQLATGCRLLDV-- 560 WM + P+ + + ++ PGTH+S T ++ P + + + Q Q+ G R+ D+ Sbjct: 44 WMQPI-PDNIPLARISIPGTHDSGTFKLQNP-IKQVWGMTQEYDFRYQMDHGARIFDIRG 101 Query: 561 RVQKDRRVC--HGPL 599 R+ D + HGPL Sbjct: 102 RLTDDNTIVLHHGPL 116
>PLC_BACCE (P14262) 1-phosphatidylinositol phosphodiesterase precursor (EC| 4.6.1.13) (Phosphatidylinositol diacylglycerol-lyase) (Phosphatidylinositol-specific phospholipase C) (PI-PLC) Length = 329 Score = 32.0 bits (71), Expect = 1.4 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 4/75 (5%) Frame = +3 Query: 387 WMAELGPERLRVHQVVWPGTHNSATAEIGVPFVTRPFAQCQSLSVYDQLATGCRLLDV-- 560 WM + P+ + + ++ PGTH+S T ++ P + + + Q Q+ G R+ D+ Sbjct: 44 WMQPI-PDSIPLARISIPGTHDSGTFKLQNP-IKQVWGMTQEYDFRYQMDHGARIFDIRG 101 Query: 561 RVQKDRRVC--HGPL 599 R+ D + HGPL Sbjct: 102 RLTDDNTIVLHHGPL 116
>XKR5_MOUSE (Q5GH66) XK-related protein 5| Length = 676 Score = 31.6 bits (70), Expect = 1.9 Identities = 27/115 (23%), Positives = 52/115 (45%) Frame = +3 Query: 213 SSSELARADRMAAIGAFFSGQVNRVKEVASQQQALARRLSASGQDFPGSGHRPADRKTWM 392 +++E+ ++ + +FFS + ++A + +++R +A G D PG P + Sbjct: 383 NTAEVGLGEQRSGESSFFSHHHWLLLKLALKTGSVSRINAALGGDSPGCSCPPLLGSSQH 442 Query: 393 AELGPERLRVHQVVWPGTHNSATAEIGVPFVTRPFAQCQSLSVYDQLATGCRLLD 557 +L + L HQ + + T E G +V P A+ +SL L+ L D Sbjct: 443 CDLQRKPLFSHQDLPSSPCDPLTLEKGSEYVGAPKAEMESLETSSYLSFASELED 497
>YS89_CAEEL (Q09624) Hypothetical protein ZK945.9| Length = 3178 Score = 31.6 bits (70), Expect = 1.9 Identities = 19/65 (29%), Positives = 34/65 (52%) Frame = +3 Query: 27 SQRRSTNLARSELARSPVTVRPGQQTTRLASSS*PARDPIQHPSSQRTSH*PYTSPIDAV 206 ++ ST+ +E+ + TV + TT L +S+ A PS+ + P TSP+ + Sbjct: 404 TEEPSTSTTTTEVTSTSSTVTTTEPTTTLTTST--ASTSTTEPSTSTVTTSPSTSPVTST 461 Query: 207 ISSSS 221 ++SSS Sbjct: 462 VTSSS 466
>MUTS_THET2 (P61671) DNA mismatch repair protein mutS| Length = 811 Score = 31.2 bits (69), Expect = 2.5 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 6/76 (7%) Frame = -2 Query: 509 LALREGAGDE-GHADLGRGGVVGARPHHLVHPQPL--RPELRHPRLAVRRPVAGP---WE 348 LALR G +A +GG + RP L P PE L V P+ G + Sbjct: 215 LALRRAQGALLAYARATQGGALSVRPFRLYDPGAFVRLPEASLKALEVFEPLRGQDTLFG 274 Query: 347 VLARGRQAPGQRLLLA 300 VL R APG+RLL A Sbjct: 275 VLDETRTAPGRRLLQA 290
>MUTS_THET8 (Q56239) DNA mismatch repair protein mutS| Length = 818 Score = 31.2 bits (69), Expect = 2.5 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 6/76 (7%) Frame = -2 Query: 509 LALREGAGDE-GHADLGRGGVVGARPHHLVHPQPL--RPELRHPRLAVRRPVAGP---WE 348 LALR G +A +GG + RP L P PE L V P+ G + Sbjct: 222 LALRRAQGALLAYARATQGGALSVRPFRLYDPGAFVRLPEASLKALEVFEPLRGQDTLFG 281 Query: 347 VLARGRQAPGQRLLLA 300 VL R APG+RLL A Sbjct: 282 VLDETRTAPGRRLLQA 297
>WNK4_HUMAN (Q96J92) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1) (Protein| kinase with no lysine 4) (Protein kinase, lysine-deficient 4) Length = 1243 Score = 30.8 bits (68), Expect = 3.2 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = -2 Query: 533 ELVVDGERLALREGAGDEGHADLGRGGVVGARPHHLVHPQPL 408 E + + +R A GAG E D G+ VG P L HP P+ Sbjct: 1068 EALAESDRAAEGLGAGVEEEGDDGKEPQVGGSPQPLSHPSPV 1109
>PURL_THEMA (Q9X0X3) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)| (FGAM synthase II) Length = 603 Score = 30.8 bits (68), Expect = 3.2 Identities = 19/47 (40%), Positives = 24/47 (51%) Frame = -2 Query: 482 EGHADLGRGGVVGARPHHLVHPQPLRPELRHPRLAVRRPVAGPWEVL 342 EG DLG GGV+ A LV L + R+ +R P PWE+L Sbjct: 232 EGAQDLGAGGVLSA-TSELVAKGNLGAIVHLDRVPLREPDMEPWEIL 277
>MUTS_THECA (Q9ZIX6) DNA mismatch repair protein mutS| Length = 817 Score = 30.0 bits (66), Expect = 5.5 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 5/64 (7%) Frame = -2 Query: 476 HADLGRGGVVGARPHHLVHPQPL--RPELRHPRLAVRRPVAGP---WEVLARGRQAPGQR 312 +A +GG + RP L P + PE L V P+ G + VL R APG+R Sbjct: 232 YARATQGGALSVRPFRLYDPGAIVRLPEASLKALEVFEPLRGQDTLFGVLDETRTAPGRR 291 Query: 311 LLLA 300 LL A Sbjct: 292 LLQA 295
>NFAC3_MOUSE (P97305) Nuclear factor of activated T-cells, cytoplasmic 3 (NF-ATc3)| (NFATc3) (T cell transcription factor NFAT4) (NF-AT4) (NFATx) Length = 1075 Score = 29.6 bits (65), Expect = 7.2 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Frame = +3 Query: 90 PGQQTTRLASSS*P-ARDPIQHPSSQRTSH*PYTSPIDAVISSSSELAR 233 PG T ++S P A PI PSS + PY SP SS S R Sbjct: 919 PGSATAASPAASHPLASSPISGPSSPQLQPMPYQSPSSGTASSPSPTTR 967
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 29.3 bits (64), Expect = 9.4 Identities = 32/128 (25%), Positives = 47/128 (36%), Gaps = 4/128 (3%) Frame = +3 Query: 3 TNPHRARRSQRRSTNLARSELARSPVTVRPGQQTTRLASSS*PARDPIQHPSSQRTSH*P 182 ++ HR S RST ARS + P + + +SS P R +R S P Sbjct: 657 SSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSP 716 Query: 183 YTSPIDAVISSSSELARADRMAAIGAFFSGQVNRVKEVASQQQALARRLSA----SGQDF 350 T PI V + + ++K+ AS RR+S+ SG Sbjct: 717 STRPIRRVSRTP------------------EPKKIKKAASPSPQSVRRVSSSRSVSGSPE 758 Query: 351 PGSGHRPA 374 P + PA Sbjct: 759 PAAKKPPA 766
>GLNE_PSESM (Q87VD5) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)| ([Glutamate--ammonia-ligase] adenylyltransferase) (Glutamine-synthetase adenylyltransferase) (ATase) Length = 985 Score = 29.3 bits (64), Expect = 9.4 Identities = 17/57 (29%), Positives = 28/57 (49%) Frame = -3 Query: 349 KSWPEADRRLASACCWLATSLTRLTCPEKKAPMAAILSARASSDELEMTASIGDVYG 179 ++WPEA R C + +T C + + +L A S ELE + S+G++ G Sbjct: 40 EAWPEARRTAFDRVCAASDFVTEQICRDPQ-----MLLQLAGSGELERSFSVGELRG 91
>END4_BACHK (Q6HDN3) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)| (Endodeoxyribonuclease IV) Length = 298 Score = 29.3 bits (64), Expect = 9.4 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = -2 Query: 494 GAGDEGHADLGRGGVVGARPHHLVHPQPLRPELRHPRLAVRRPVAG 357 GAG + H ++G G + HH+VH P+L H + P G Sbjct: 224 GAGKDRHENIGFGHIGYKALHHIVH----HPQLTHVPKILETPYVG 265
>END4_BACCZ (Q634Q3) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)| (Endodeoxyribonuclease IV) Length = 298 Score = 29.3 bits (64), Expect = 9.4 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = -2 Query: 494 GAGDEGHADLGRGGVVGARPHHLVHPQPLRPELRHPRLAVRRPVAG 357 GAG + H ++G G + HH+VH P+L H + P G Sbjct: 224 GAGKDRHENIGFGHIGYKALHHIVH----HPQLTHVPKILETPYVG 265
>END4_BACCR (Q818H3) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)| (Endodeoxyribonuclease IV) Length = 298 Score = 29.3 bits (64), Expect = 9.4 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = -2 Query: 494 GAGDEGHADLGRGGVVGARPHHLVHPQPLRPELRHPRLAVRRPVAG 357 GAG + H ++G G + HH+VH P+L H + P G Sbjct: 224 GAGKDRHENIGFGHIGYKALHHIVH----HPQLMHVPKILETPYVG 265
>END4_BACAN (Q81LV1) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)| (Endodeoxyribonuclease IV) Length = 298 Score = 29.3 bits (64), Expect = 9.4 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = -2 Query: 494 GAGDEGHADLGRGGVVGARPHHLVHPQPLRPELRHPRLAVRRPVAG 357 GAG + H ++G G + HH+VH P+L H + P G Sbjct: 224 GAGKDRHENIGFGHIGYKALHHIVH----HPQLTHVPKILETPYVG 265 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,449,533 Number of Sequences: 219361 Number of extensions: 1678714 Number of successful extensions: 5929 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5644 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5924 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
