ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart46c07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 220 bits (111), Expect = 4e-54 Identities = 201/231 (87%) Strand = Plus / Minus Query: 363 caccggccggcggaccgcaagacgtggatggcggagctcgggccggagcggctgcgggtg 422 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct: 20760917 caccggccggccgaccggaagacgtggatggcggagctcgggccggagcggctgcgcgtg 20760858 Query: 423 caccaggtggtgtggccgggcacccacaactccgccacggccgagatcggcgtgcccttc 482 |||||| ||||||||||||| || ||| |||| || ||| | |||||||| | || ||| Sbjct: 20760857 caccagctggtgtggccggggacgcacgactcggcgacgaacaagatcggcatcccgttc 20760798 Query: 483 gtcacccgccccttcgcgcagtgccagtcgctctccgtctacgaccagctcgccacgggc 542 || || |||||||||||||||||||||||||| || || ||||| ||||||||| ||||| Sbjct: 20760797 gtgacgcgccccttcgcgcagtgccagtcgctgtcggtgtacgagcagctcgccgcgggc 20760738 Query: 543 tgccgcctcctcgacgtccgcgtccagaaggaccgccgcgtctgccacggc 593 |||| || ||||||| ||||||||| |||| || ||||||||||||||| Sbjct: 20760737 gcccgcgtcatcgacgtgcgcgtccaggaggagcggcgcgtctgccacggc 20760687 Score = 40.1 bits (20), Expect = 8.3 Identities = 32/36 (88%) Strand = Plus / Minus Query: 249 gccataggcgccttcttctcggggcaggtcaaccgc 284 ||||| ||||||||||||||| |||||| |||||| Sbjct: 20761031 gccatgggcgccttcttctcgtcgcaggtgaaccgc 20760996
>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0569E11 Length = 157319 Score = 220 bits (111), Expect = 4e-54 Identities = 201/231 (87%) Strand = Plus / Minus Query: 363 caccggccggcggaccgcaagacgtggatggcggagctcgggccggagcggctgcgggtg 422 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct: 35946 caccggccggccgaccggaagacgtggatggcggagctcgggccggagcggctgcgcgtg 35887 Query: 423 caccaggtggtgtggccgggcacccacaactccgccacggccgagatcggcgtgcccttc 482 |||||| ||||||||||||| || ||| |||| || ||| | |||||||| | || ||| Sbjct: 35886 caccagctggtgtggccggggacgcacgactcggcgacgaacaagatcggcatcccgttc 35827 Query: 483 gtcacccgccccttcgcgcagtgccagtcgctctccgtctacgaccagctcgccacgggc 542 || || |||||||||||||||||||||||||| || || ||||| ||||||||| ||||| Sbjct: 35826 gtgacgcgccccttcgcgcagtgccagtcgctgtcggtgtacgagcagctcgccgcgggc 35767 Query: 543 tgccgcctcctcgacgtccgcgtccagaaggaccgccgcgtctgccacggc 593 |||| || ||||||| ||||||||| |||| || ||||||||||||||| Sbjct: 35766 gcccgcgtcatcgacgtgcgcgtccaggaggagcggcgcgtctgccacggc 35716 Score = 40.1 bits (20), Expect = 8.3 Identities = 32/36 (88%) Strand = Plus / Minus Query: 249 gccataggcgccttcttctcggggcaggtcaaccgc 284 ||||| ||||||||||||||| |||||| |||||| Sbjct: 36060 gccatgggcgccttcttctcgtcgcaggtgaaccgc 36025
>dbj|AK065856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043D02, full insert sequence Length = 1213 Score = 220 bits (111), Expect = 4e-54 Identities = 201/231 (87%) Strand = Plus / Plus Query: 363 caccggccggcggaccgcaagacgtggatggcggagctcgggccggagcggctgcgggtg 422 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct: 159 caccggccggccgaccggaagacgtggatggcggagctcgggccggagcggctgcgcgtg 218 Query: 423 caccaggtggtgtggccgggcacccacaactccgccacggccgagatcggcgtgcccttc 482 |||||| ||||||||||||| || ||| |||| || ||| | |||||||| | || ||| Sbjct: 219 caccagctggtgtggccggggacgcacgactcggcgacgaacaagatcggcatcccgttc 278 Query: 483 gtcacccgccccttcgcgcagtgccagtcgctctccgtctacgaccagctcgccacgggc 542 || || |||||||||||||||||||||||||| || || ||||| ||||||||| ||||| Sbjct: 279 gtgacgcgccccttcgcgcagtgccagtcgctgtcggtgtacgagcagctcgccgcgggc 338 Query: 543 tgccgcctcctcgacgtccgcgtccagaaggaccgccgcgtctgccacggc 593 |||| || ||||||| ||||||||| |||| || ||||||||||||||| Sbjct: 339 gcccgcgtcatcgacgtgcgcgtccaggaggagcggcgcgtctgccacggc 389 Score = 40.1 bits (20), Expect = 8.3 Identities = 32/36 (88%) Strand = Plus / Plus Query: 249 gccataggcgccttcttctcggggcaggtcaaccgc 284 ||||| ||||||||||||||| |||||| |||||| Sbjct: 45 gccatgggcgccttcttctcgtcgcaggtgaaccgc 80
>dbj|AK061726.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-B04, full insert sequence Length = 1477 Score = 220 bits (111), Expect = 4e-54 Identities = 201/231 (87%) Strand = Plus / Plus Query: 363 caccggccggcggaccgcaagacgtggatggcggagctcgggccggagcggctgcgggtg 422 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct: 389 caccggccggccgaccggaagacgtggatggcggagctcgggccggagcggctgcgcgtg 448 Query: 423 caccaggtggtgtggccgggcacccacaactccgccacggccgagatcggcgtgcccttc 482 |||||| ||||||||||||| || ||| |||| || ||| | |||||||| | || ||| Sbjct: 449 caccagctggtgtggccggggacgcacgactcggcgacgaacaagatcggcatcccgttc 508 Query: 483 gtcacccgccccttcgcgcagtgccagtcgctctccgtctacgaccagctcgccacgggc 542 || || |||||||||||||||||||||||||| || || ||||| ||||||||| ||||| Sbjct: 509 gtgacgcgccccttcgcgcagtgccagtcgctgtcggtgtacgagcagctcgccgcgggc 568 Query: 543 tgccgcctcctcgacgtccgcgtccagaaggaccgccgcgtctgccacggc 593 |||| || ||||||| ||||||||| |||| || ||||||||||||||| Sbjct: 569 gcccgcgtcatcgacgtgcgcgtccaggaggagcggcgcgtctgccacggc 619 Score = 40.1 bits (20), Expect = 8.3 Identities = 32/36 (88%) Strand = Plus / Plus Query: 249 gccataggcgccttcttctcggggcaggtcaaccgc 284 ||||| ||||||||||||||| |||||| |||||| Sbjct: 275 gccatgggcgccttcttctcgtcgcaggtgaaccgc 310
>gb|AY112292.1| Zea mays CL379_2 mRNA sequence Length = 1061 Score = 174 bits (88), Expect = 2e-40 Identities = 198/232 (85%), Gaps = 2/232 (0%) Strand = Plus / Plus Query: 363 caccggccggcggaccgcaagacgtggatggcggagctcgg-gccggagcggctgcgggt 421 ||||||||||||||||| ||| ||||||||||||||| || ||||| ||||||| || Sbjct: 391 caccggccggcggaccggaagcggtggatggcggagctgggcgccggca-ggctgcgcgt 449 Query: 422 gcaccaggtggtgtggccgggcacccacaactccgccacggccgagatcggcgtgccctt 481 |||||||||||||||||| ||||| ||| |||| ||||| | | |||||||||||| || Sbjct: 450 gcaccaggtggtgtggcccggcacgcacgactcggccaccgaccggatcggcgtgccgtt 509 Query: 482 cgtcacccgccccttcgcgcagtgccagtcgctctccgtctacgaccagctcgccacggg 541 ||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| || ||| Sbjct: 510 cgtgacccgccccttcgcgcagtgccagtcgctgtccgtgtacgagcagctggcgctggg 569 Query: 542 ctgccgcctcctcgacgtccgcgtccagaaggaccgccgcgtctgccacggc 593 | ||| |||||||||| ||||||||||||| |||||||| ||||||||| Sbjct: 570 cgcgcgcgtcctcgacgtgcgcgtccagaaggggcgccgcgtatgccacggc 621
>gb|AY105723.1| Zea mays PCO102084 mRNA sequence Length = 1551 Score = 133 bits (67), Expect = 7e-28 Identities = 190/231 (82%) Strand = Plus / Plus Query: 363 caccggccggcggaccgcaagacgtggatggcggagctcgggccggagcggctgcgggtg 422 ||||||||||||||||| ||| ||||||||||||||| || | || |||||| ||| Sbjct: 474 caccggccggcggaccggaagcggtggatggcggagctgggcgccgacaagctgcgcgtg 533 Query: 423 caccaggtggtgtggccgggcacccacaactccgccacggccgagatcggcgtgcccttc 482 ||||||||||||||||| ||||| ||| |||| ||||| | ||||||||||||| | Sbjct: 534 caccaggtggtgtggcccggcacgcacgactcggccaccaacaagatcggcgtgccgctg 593 Query: 483 gtcacccgccccttcgcgcagtgccagtcgctctccgtctacgaccagctcgccacgggc 542 || |||||||||||||||||||||||||| | || || ||||| ||||| |||| |||| Sbjct: 594 gtgacccgccccttcgcgcagtgccagtccatgtctgtgtacgagcagctggccatgggc 653 Query: 543 tgccgcctcctcgacgtccgcgtccagaaggaccgccgcgtctgccacggc 593 ||| || ||||||| ||||| ||| |||| ||||| |||||||||||| Sbjct: 654 acgcgcgtcatcgacgtgcgcgtgcaggaggagcgccgggtctgccacggc 704
>gb|DQ478172.1| Porcine respiratory and reproductive syndrome virus isolate PRRSV0004276 envelope glycoprotein gene, complete cds Length = 603 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 273 caggtcaaccgcgtcaaggaagtggc 298 |||| ||||||||||||||||||||| Sbjct: 279 caggccaaccgcgtcaaggaagtggc 254
>emb|AL021391.2|HS102D24 Human DNA sequence from clone RP1-102D24 on chromosome 22, complete sequence Length = 138129 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 81 acagtccggccaggccaacaaacaac 106 |||||| ||||||||||||||||||| Sbjct: 135317 acagtcgggccaggccaacaaacaac 135292
>emb|AL121806.2|DMBR42I17 Drosophila melanogaster BAC clone BACR42I17 Length = 155168 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 ccggccaggccaacaaacaaca 107 |||||||||||||||||||||| Sbjct: 36342 ccggccaggccaacaaacaaca 36363
>gb|AC104410.3| Drosophila melanogaster X BAC RP98-10H22 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 179869 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 ccggccaggccaacaaacaaca 107 |||||||||||||||||||||| Sbjct: 51179 ccggccaggccaacaaacaaca 51200
>gb|AE003419.2| Drosophila melanogaster chromosome X, section 3 of 74 of the complete sequence Length = 306598 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 ccggccaggccaacaaacaaca 107 |||||||||||||||||||||| Sbjct: 298960 ccggccaggccaacaaacaaca 298981
>ref|XM_463750.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 600 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 cgccataggcgccttcttctc 268 ||||||||||||||||||||| Sbjct: 165 cgccataggcgccttcttctc 185
>ref|XM_847352.1| PREDICTED: Canis familiaris similar to Myeloperoxidase precursor (MPO) (LOC609986), mRNA Length = 2205 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 303 cagcagcaggcgctggccagg 323 ||||||||||||||||||||| Sbjct: 2035 cagcagcaggcgctggccagg 2055
>ref|XM_546579.2| PREDICTED: Canis familiaris similar to Asialoglycoprotein receptor 1 (ASGPR 1) (ASGP-R 1) (Hepatic lectin H1) (LOC489461), mRNA Length = 1038 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 328 tgtcggcctcgggccaggacttccc 352 |||| |||||||||||||||||||| Sbjct: 718 tgtccgcctcgggccaggacttccc 694
>ref|XM_851891.1| PREDICTED: Canis familiaris similar to C-type lectin, superfamily member 14 isoform 2, transcript variant 4 (LOC607405), mRNA Length = 2019 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 328 tgtcggcctcgggccaggacttccc 352 |||| |||||||||||||||||||| Sbjct: 1003 tgtccgcctcgggccaggacttccc 979
>ref|XM_851850.1| PREDICTED: Canis familiaris similar to C-type lectin, superfamily member 14 isoform 2, transcript variant 3 (LOC607405), mRNA Length = 1947 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 328 tgtcggcctcgggccaggacttccc 352 |||| |||||||||||||||||||| Sbjct: 931 tgtccgcctcgggccaggacttccc 907
>ref|XM_843632.1| PREDICTED: Canis familiaris similar to C-type lectin, superfamily member 14 isoform 2, transcript variant 1 (LOC607405), mRNA Length = 1971 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 328 tgtcggcctcgggccaggacttccc 352 |||| |||||||||||||||||||| Sbjct: 955 tgtccgcctcgggccaggacttccc 931
>ref|XM_851767.1| PREDICTED: Canis familiaris similar to C-type lectin, superfamily member 14 isoform 2, transcript variant 2 (LOC607405), mRNA Length = 1914 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 328 tgtcggcctcgggccaggacttccc 352 |||| |||||||||||||||||||| Sbjct: 898 tgtccgcctcgggccaggacttccc 874
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 248 cgccataggcgccttcttctc 268 ||||||||||||||||||||| Sbjct: 41899722 cgccataggcgccttcttctc 41899702
>dbj|AP003735.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1147A04 Length = 150053 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 248 cgccataggcgccttcttctc 268 ||||||||||||||||||||| Sbjct: 143098 cgccataggcgccttcttctc 143078
>dbj|AP003683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0431G06 Length = 140466 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 248 cgccataggcgccttcttctc 268 ||||||||||||||||||||| Sbjct: 1799 cgccataggcgccttcttctc 1779
>dbj|AK069239.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010G04, full insert sequence Length = 786 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 cgccataggcgccttcttctc 268 ||||||||||||||||||||| Sbjct: 88 cgccataggcgccttcttctc 108
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 403 ggccggagcggctgcgggtgc 423 ||||||||||||||||||||| Sbjct: 1834612 ggccggagcggctgcgggtgc 1834632
>gb|U46937.1|MPU46937 Mycobacterium phage DS6A, NheI D fragment sequence Length = 6611 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 410 gcggctgcgggtgcaccaggtggtg 434 ||||||||||||||| ||||||||| Sbjct: 4749 gcggctgcgggtgcagcaggtggtg 4773
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 ggccggagcggctgcgggtg 422 |||||||||||||||||||| Sbjct: 1455586 ggccggagcggctgcgggtg 1455605
>ref|XM_366207.1| Magnaporthe grisea 70-15 chromosome IV hypothetical protein (MG10426.4) partial mRNA Length = 6162 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 caacacgcctcgcttcctcctcct 126 ||||| |||||||||||||||||| Sbjct: 4534 caacaagcctcgcttcctcctcct 4511
>gb|AY658842.1| Synthetic construct Peudomonas aeruginosa clone FLH042232.01F PA1946 gene, partial cds Length = 960 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 agatcggcgtgcccttcgtc 485 |||||||||||||||||||| Sbjct: 413 agatcggcgtgcccttcgtc 432
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 ggccaggcgcctgtcggcct 336 |||||||||||||||||||| Sbjct: 525645 ggccaggcgcctgtcggcct 525664
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 402 gggccggagcggctgcgggtgcac 425 |||||||||||||||||| ||||| Sbjct: 3300337 gggccggagcggctgcggctgcac 3300314
>gb|AY386264.1| Orf virus strain OV-SA00, complete genome Length = 139962 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 543 tgccgcctcctcgacgtccgcgtc 566 |||||||||||||| ||||||||| Sbjct: 27010 tgccgcctcctcgaggtccgcgtc 27033
>gb|AY386263.1| Orf virus strain OV-IA82, complete genome Length = 137241 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 543 tgccgcctcctcgacgtccgcgtc 566 |||||||||||||| ||||||||| Sbjct: 25845 tgccgcctcctcgaggtccgcgtc 25868
>gb|AC127315.4| Mus musculus BAC clone RP23-218F21 from chromosome 8, complete sequence Length = 207577 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 aggaagtggcgagccagcag 308 |||||||||||||||||||| Sbjct: 69266 aggaagtggcgagccagcag 69285
>ref|XM_745632.1| Aspergillus fumigatus Af293 thiazole biosynthesis enzyme (Afu6g08360) partial mRNA Length = 999 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 464 cgagatcggcgtgcccttcg 483 |||||||||||||||||||| Sbjct: 414 cgagatcggcgtgcccttcg 433
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 548 cctcctcgacgtccgcgtcc 567 |||||||||||||||||||| Sbjct: 3611276 cctcctcgacgtccgcgtcc 3611295
>gb|AC105729.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1607A12, complete sequence Length = 177327 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 402 gggccggagcggctgcgggtgcac 425 |||||||||||||||||| ||||| Sbjct: 128877 gggccggagcggctgcggctgcac 128900
>emb|BX569693.1| Synechococcus sp. WH8102 complete genome; segment 5/7 Length = 349213 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ctcgggccggagcggctgcg 418 |||||||||||||||||||| Sbjct: 147104 ctcgggccggagcggctgcg 147123
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gccggagcggctgcgggtgc 423 |||||||||||||||||||| Sbjct: 190954 gccggagcggctgcgggtgc 190935
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 gccagcagcaggcgctggcc 320 |||||||||||||||||||| Sbjct: 1169922 gccagcagcaggcgctggcc 1169941
>gb|AE012192.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 100 of 460 of the complete genome Length = 11053 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 agccagcagcaggcgctggc 319 |||||||||||||||||||| Sbjct: 3220 agccagcagcaggcgctggc 3239
>gb|DQ184476.1| Orf virus strain NZ2, complete genome Length = 137820 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 543 tgccgcctcctcgacgtccgcgtc 566 |||||||||||||| ||||||||| Sbjct: 26249 tgccgcctcctcgaggtccgcgtc 26272
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 agccagcagcaggcgctggc 319 |||||||||||||||||||| Sbjct: 3949210 agccagcagcaggcgctggc 3949191
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 acatcgagctcgacgatcgc 30 |||||||||||||||||||| Sbjct: 3529510 acatcgagctcgacgatcgc 3529491
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 463 ccgagatcggcgtgcccttc 482 |||||||||||||||||||| Sbjct: 384150 ccgagatcggcgtgcccttc 384169
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 402 gggccggagcggctgcgggtgcac 425 |||||||||||||||||| ||||| Sbjct: 3300448 gggccggagcggctgcggctgcac 3300425
>gb|AC115914.6| Mus musculus chromosome 8, clone RP24-487J5, complete sequence Length = 163170 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 aggaagtggcgagccagcag 308 |||||||||||||||||||| Sbjct: 108701 aggaagtggcgagccagcag 108720
>gb|AC106772.3| Homo sapiens chromosome 5 clone RP11-310P5, complete sequence Length = 161984 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 aggaagtggcgagccagcag 308 |||||||||||||||||||| Sbjct: 90550 aggaagtggcgagccagcag 90569
>gb|AC119797.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0083G16, complete sequence Length = 145590 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 402 gggccggagcggctgcgggtgcac 425 |||||||||||||||||| ||||| Sbjct: 125210 gggccggagcggctgcggctgcac 125187
>gb|AE004621.1| Pseudomonas aeruginosa PAO1, section 182 of 529 of the complete genome Length = 10565 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 agatcggcgtgcccttcgtc 485 |||||||||||||||||||| Sbjct: 5349 agatcggcgtgcccttcgtc 5368
>gb|AE005077.1| Halobacterium sp. NRC-1 section 108 of 170 of the complete genome Length = 14625 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 545 ccgcctcctcgacgtccgcgtcca 568 |||||||||||||| ||||||||| Sbjct: 11258 ccgcctcctcgacgcccgcgtcca 11235
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 gctcgggccggagcggctgc 417 |||||||||||||||||||| Sbjct: 2872711 gctcgggccggagcggctgc 2872692
>gb|U49979.1|OVU49979 Orf virus E10R homolog gene, partial cds, and DNA polymerase gene, complete cds Length = 3395 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 543 tgccgcctcctcgacgtccgcgtc 566 |||||||||||||| ||||||||| Sbjct: 750 tgccgcctcctcgaggtccgcgtc 727 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,577,286 Number of Sequences: 3902068 Number of extensions: 3577286 Number of successful extensions: 67118 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66012 Number of HSP's gapped (non-prelim): 1105 length of query: 609 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 586 effective length of database: 17,143,297,704 effective search space: 10045972454544 effective search space used: 10045972454544 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
