Clone Name | bart46b10 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ422119.1|TAE422119 Triticum aestivum mRNA for xylanase inhibitor protein I (xipI gene) Length = 915 Score = 61.9 bits (31), Expect = 4e-07 Identities = 52/59 (88%) Strand = Plus / Plus Query: 41 tgcctcctacccctcctctccgtcgtccctgccttattcctaaccccgccggccttggc 99 |||||||| ||||||||||||||| | | ||||||||||| |||||| |||||||||| Sbjct: 31 tgcctcctggccctcctctccgtcgccgcggccttattcctgaccccgacggccttggc 89
>ref|XM_478063.1| Oryza sativa (japonica cultivar-group), mRNA Length = 429 Score = 40.1 bits (20), Expect = 1.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 39 cgtgcctcctacccctcctctccg 62 |||||||||||| ||||||||||| Sbjct: 322 cgtgcctcctactcctcctctccg 299
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 1.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 39 cgtgcctcctacccctcctctccg 62 |||||||||||| ||||||||||| Sbjct: 16993856 cgtgcctcctactcctcctctccg 16993833
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 ctctccgtcgtccctgcctt 75 |||||||||||||||||||| Sbjct: 25453950 ctctccgtcgtccctgcctt 25453969
>dbj|AP005181.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0016H06 Length = 148158 Score = 40.1 bits (20), Expect = 1.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 39 cgtgcctcctacccctcctctccg 62 |||||||||||| ||||||||||| Sbjct: 73267 cgtgcctcctactcctcctctccg 73244
>dbj|AP004192.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1643_A10 Length = 130037 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 ctctccgtcgtccctgcctt 75 |||||||||||||||||||| Sbjct: 109612 ctctccgtcgtccctgcctt 109631
>gb|AC164597.11| Mus musculus chromosome 15, clone RP23-108H23, complete sequence Length = 190235 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 43 cctcctacccctcctctcc 61 ||||||||||||||||||| Sbjct: 8548 cctcctacccctcctctcc 8530
>gb|AF049850.1|MMHC438N12 Mus musculus major histocompatibility locus class III region: complement C4 (C4) and cytochrome P450 hydroxylase A (CYP21OH-A) genes, complete cds; slp pseudogene, complete sequence; NG6, SKI, and complement factor B (Bf) genes, complete cds; and complement factor C2 (C2) gene, partial cds Length = 149886 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 43 cctcctacccctcctctcc 61 ||||||||||||||||||| Sbjct: 12504 cctcctacccctcctctcc 12486
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 5.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 50 cccctcctctccgtcgtccctgc 72 |||||||||| |||||||||||| Sbjct: 12361590 cccctcctcttcgtcgtccctgc 12361568
>gb|AC122815.3| Mus musculus BAC clone RP23-234O3 from chromosome 2, complete sequence Length = 176452 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 43 cctcctacccctcctctcc 61 ||||||||||||||||||| Sbjct: 137362 cctcctacccctcctctcc 137380
>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14, complete sequence Length = 132560 Score = 38.2 bits (19), Expect = 5.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 50 cccctcctctccgtcgtccctgc 72 |||||||||| |||||||||||| Sbjct: 20608 cccctcctcttcgtcgtccctgc 20586
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 38.2 bits (19), Expect = 5.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 45 tcctacccctcctctccgtcgtc 67 |||| |||||||||||||||||| Sbjct: 3257666 tcctccccctcctctccgtcgtc 3257644
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 5.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 50 cccctcctctccgtcgtccctgc 72 |||||||||| |||||||||||| Sbjct: 12358353 cccctcctcttcgtcgtccctgc 12358331
>gb|AC130823.4| Mus musculus BAC clone RP23-320F5 from chromosome 15, complete sequence Length = 193211 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 43 cctcctacccctcctctcc 61 ||||||||||||||||||| Sbjct: 180062 cctcctacccctcctctcc 180044
>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0029K10, from chromosome 3, complete sequence Length = 135940 Score = 38.2 bits (19), Expect = 5.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 50 cccctcctctccgtcgtccctgc 72 |||||||||| |||||||||||| Sbjct: 131123 cccctcctcttcgtcgtccctgc 131101
>gb|M17440.1|MUSMHC4H2S Mus musculus complement component C4A (C4A) gene, complete cds Length = 17522 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 43 cctcctacccctcctctcc 61 ||||||||||||||||||| Sbjct: 7340 cctcctacccctcctctcc 7358
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 38.2 bits (19), Expect = 5.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 45 tcctacccctcctctccgtcgtc 67 |||| |||||||||||||||||| Sbjct: 3257611 tcctccccctcctctccgtcgtc 3257589
>emb|AL713936.4|CNS07YPH Oryza sativa chromosome 12, . BAC OJ1057_G11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 109081 Score = 38.2 bits (19), Expect = 5.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 45 tcctacccctcctctccgtcgtc 67 |||| |||||||||||||||||| Sbjct: 48052 tcctccccctcctctccgtcgtc 48030
>emb|CT573030.2| Mouse DNA sequence from clone RP24-100B3 on chromosome 17, complete sequence Length = 111957 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 43 cctcctacccctcctctcc 61 ||||||||||||||||||| Sbjct: 75983 cctcctacccctcctctcc 75965
>emb|AL845525.13| Mouse DNA sequence from clone RP23-298B10 on chromosome 2, complete sequence Length = 131438 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 43 cctcctacccctcctctcc 61 ||||||||||||||||||| Sbjct: 119897 cctcctacccctcctctcc 119879
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 53 ctcctctccgtcgtccctg 71 ||||||||||||||||||| Sbjct: 1146317 ctcctctccgtcgtccctg 1146335
>emb|AL356456.1|LMFLUNK01 Leishmania major Friedlin cosmid clones L9127,L3286,L3175,L8286,L7480, incomplete shotgun, assembled reads, with VERY preliminary annotation, complete sequence Length = 139597 Score = 38.2 bits (19), Expect = 5.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 caaaccaaaaatggcgccg 19 ||||||||||||||||||| Sbjct: 53415 caaaccaaaaatggcgccg 53397 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 696,807 Number of Sequences: 3902068 Number of extensions: 696807 Number of successful extensions: 37551 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37392 Number of HSP's gapped (non-prelim): 159 length of query: 118 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 97 effective length of database: 17,151,101,840 effective search space: 1663656878480 effective search space used: 1663656878480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)