ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart46b10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ422119.1|TAE422119 Triticum aestivum mRNA for xylanase inh... 62 4e-07
2ref|XM_478063.1| Oryza sativa (japonica cultivar-group), mRNA 40 1.4
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.4
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.4
5dbj|AP005181.4| Oryza sativa (japonica cultivar-group) genomic D... 40 1.4
6dbj|AP004192.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.4
7gb|AC164597.11| Mus musculus chromosome 15, clone RP23-108H23, c... 38 5.4
8gb|AF049850.1|MMHC438N12 Mus musculus major histocompatibility l... 38 5.4
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 5.4
10gb|AC122815.3| Mus musculus BAC clone RP23-234O3 from chromosome... 38 5.4
11gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome... 38 5.4
12dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.4
13dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.4
14gb|AC130823.4| Mus musculus BAC clone RP23-320F5 from chromosome... 38 5.4
15gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare str... 38 5.4
16gb|M17440.1|MUSMHC4H2S Mus musculus complement component C4A (C4... 38 5.4
17gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 5.4
18emb|AL713936.4|CNS07YPH Oryza sativa chromosome 12, . BAC OJ1057... 38 5.4
19emb|CT573030.2| Mouse DNA sequence from clone RP24-100B3 on chro... 38 5.4
20emb|AL845525.13| Mouse DNA sequence from clone RP23-298B10 on ch... 38 5.4
21emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 38 5.4
22emb|AL356456.1|LMFLUNK01 Leishmania major Friedlin cosmid clones... 38 5.4

>emb|AJ422119.1|TAE422119 Triticum aestivum mRNA for xylanase inhibitor protein I (xipI
          gene)
          Length = 915

 Score = 61.9 bits (31), Expect = 4e-07
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                     
Query: 41 tgcctcctacccctcctctccgtcgtccctgccttattcctaaccccgccggccttggc 99
          ||||||||  ||||||||||||||| | | ||||||||||| |||||| ||||||||||
Sbjct: 31 tgcctcctggccctcctctccgtcgccgcggccttattcctgaccccgacggccttggc 89



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>ref|XM_478063.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 429

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 39  cgtgcctcctacccctcctctccg 62
           |||||||||||| |||||||||||
Sbjct: 322 cgtgcctcctactcctcctctccg 299



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 39       cgtgcctcctacccctcctctccg 62
                |||||||||||| |||||||||||
Sbjct: 16993856 cgtgcctcctactcctcctctccg 16993833



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 56       ctctccgtcgtccctgcctt 75
                ||||||||||||||||||||
Sbjct: 25453950 ctctccgtcgtccctgcctt 25453969



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>dbj|AP005181.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0016H06
          Length = 148158

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 39    cgtgcctcctacccctcctctccg 62
             |||||||||||| |||||||||||
Sbjct: 73267 cgtgcctcctactcctcctctccg 73244



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>dbj|AP004192.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1643_A10
          Length = 130037

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 56     ctctccgtcgtccctgcctt 75
              ||||||||||||||||||||
Sbjct: 109612 ctctccgtcgtccctgcctt 109631



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>gb|AC164597.11| Mus musculus chromosome 15, clone RP23-108H23, complete sequence
          Length = 190235

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 43   cctcctacccctcctctcc 61
            |||||||||||||||||||
Sbjct: 8548 cctcctacccctcctctcc 8530



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>gb|AF049850.1|MMHC438N12 Mus musculus major histocompatibility locus class III region:
             complement C4 (C4) and cytochrome P450 hydroxylase A
             (CYP21OH-A) genes, complete cds; slp pseudogene, complete
             sequence; NG6, SKI, and complement factor B (Bf) genes,
             complete cds; and complement factor C2 (C2) gene, partial
             cds
          Length = 149886

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 43    cctcctacccctcctctcc 61
             |||||||||||||||||||
Sbjct: 12504 cctcctacccctcctctcc 12486



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 50       cccctcctctccgtcgtccctgc 72
                |||||||||| ||||||||||||
Sbjct: 12361590 cccctcctcttcgtcgtccctgc 12361568



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>gb|AC122815.3| Mus musculus BAC clone RP23-234O3 from chromosome 2, complete sequence
          Length = 176452

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 43     cctcctacccctcctctcc 61
              |||||||||||||||||||
Sbjct: 137362 cctcctacccctcctctcc 137380



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>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0098H14, complete sequence
          Length = 132560

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 50    cccctcctctccgtcgtccctgc 72
             |||||||||| ||||||||||||
Sbjct: 20608 cccctcctcttcgtcgtccctgc 20586



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 45      tcctacccctcctctccgtcgtc 67
               |||| ||||||||||||||||||
Sbjct: 3257666 tcctccccctcctctccgtcgtc 3257644



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 50       cccctcctctccgtcgtccctgc 72
                |||||||||| ||||||||||||
Sbjct: 12358353 cccctcctcttcgtcgtccctgc 12358331



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>gb|AC130823.4| Mus musculus BAC clone RP23-320F5 from chromosome 15, complete sequence
          Length = 193211

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 43     cctcctacccctcctctcc 61
              |||||||||||||||||||
Sbjct: 180062 cctcctacccctcctctcc 180044



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>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0029K10, from chromosome 3, complete sequence
          Length = 135940

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 50     cccctcctctccgtcgtccctgc 72
              |||||||||| ||||||||||||
Sbjct: 131123 cccctcctcttcgtcgtccctgc 131101



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>gb|M17440.1|MUSMHC4H2S Mus musculus complement component C4A (C4A) gene, complete cds
          Length = 17522

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 43   cctcctacccctcctctcc 61
            |||||||||||||||||||
Sbjct: 7340 cctcctacccctcctctcc 7358



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 45      tcctacccctcctctccgtcgtc 67
               |||| ||||||||||||||||||
Sbjct: 3257611 tcctccccctcctctccgtcgtc 3257589



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>emb|AL713936.4|CNS07YPH Oryza sativa chromosome 12, . BAC OJ1057_G11 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 109081

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 45    tcctacccctcctctccgtcgtc 67
             |||| ||||||||||||||||||
Sbjct: 48052 tcctccccctcctctccgtcgtc 48030



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>emb|CT573030.2| Mouse DNA sequence from clone RP24-100B3 on chromosome 17, complete
             sequence
          Length = 111957

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 43    cctcctacccctcctctcc 61
             |||||||||||||||||||
Sbjct: 75983 cctcctacccctcctctcc 75965



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>emb|AL845525.13| Mouse DNA sequence from clone RP23-298B10 on chromosome 2, complete
              sequence
          Length = 131438

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 43     cctcctacccctcctctcc 61
              |||||||||||||||||||
Sbjct: 119897 cctcctacccctcctctcc 119879



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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 53      ctcctctccgtcgtccctg 71
               |||||||||||||||||||
Sbjct: 1146317 ctcctctccgtcgtccctg 1146335



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>emb|AL356456.1|LMFLUNK01 Leishmania major Friedlin cosmid clones L9127,L3286,L3175,L8286,L7480,
             incomplete shotgun, assembled reads, with VERY preliminary
             annotation, complete sequence
          Length = 139597

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     caaaccaaaaatggcgccg 19
             |||||||||||||||||||
Sbjct: 53415 caaaccaaaaatggcgccg 53397


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 696,807
Number of Sequences: 3902068
Number of extensions: 696807
Number of successful extensions: 37551
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37392
Number of HSP's gapped (non-prelim): 159
length of query: 118
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 97
effective length of database: 17,151,101,840
effective search space: 1663656878480
effective search space used: 1663656878480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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