ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart46a02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 184 bits (93), Expect = 2e-43 Identities = 234/281 (83%) Strand = Plus / Minus Query: 326 gcggcgacgagttccccggctgcgcccaccgccccgccgaccgcaagacgtggatgtccg 385 ||||||| | |||||||||| ||| ||||| || |||||||| |||||||||||| | | Sbjct: 20760943 gcggcgaggcgttccccggcagcgagcaccggccggccgaccggaagacgtggatggcgg 20760884 Query: 386 agctcggccccgaccgcctgcgcctgcaccaggtggtctggccgggctcccacgactccg 445 ||||||| || || || |||||| |||||||| |||| |||||||| | |||||||| | Sbjct: 20760883 agctcgggccggagcggctgcgcgtgcaccagctggtgtggccggggacgcacgactcgg 20760824 Query: 446 ccaccaacaagatcggcatccccttcatcgcccgccccttcgcgcagtgccagtcgctct 505 | || ||||||||||||||||| ||| | | |||||||||||||||||||||||||| | Sbjct: 20760823 cgacgaacaagatcggcatcccgttcgtgacgcgccccttcgcgcagtgccagtcgctgt 20760764 Query: 506 cctgctaccaccagctcgccctcggctgccgcctcctcgacgtccgcgtgcaggaggagc 565 | ||| | ||||||||| ||| |||| || ||||||| ||||| |||||||||| Sbjct: 20760763 cggtgtacgagcagctcgccgcgggcgcccgcgtcatcgacgtgcgcgtccaggaggagc 20760704 Query: 566 gccgcgtctgccacggcgtgctcgccacctactcggtcgac 606 | ||||||||||||||||||||||| |||||||| |||||| Sbjct: 20760703 ggcgcgtctgccacggcgtgctcgcaacctactccgtcgac 20760663 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 226 aacccgctggacgccatgggcgccttctcctcggcgcagatgaaccggcgcaagctggtc 285 ||||| ||||| |||||||||||||||| |||| ||||| ||||||| || ||||||||| Sbjct: 20761043 aaccctctggaagccatgggcgccttcttctcgtcgcaggtgaaccgccggaagctggtc 20760984 Query: 286 acca 289 |||| Sbjct: 20760983 acca 20760980
>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0569E11 Length = 157319 Score = 184 bits (93), Expect = 2e-43 Identities = 234/281 (83%) Strand = Plus / Minus Query: 326 gcggcgacgagttccccggctgcgcccaccgccccgccgaccgcaagacgtggatgtccg 385 ||||||| | |||||||||| ||| ||||| || |||||||| |||||||||||| | | Sbjct: 35972 gcggcgaggcgttccccggcagcgagcaccggccggccgaccggaagacgtggatggcgg 35913 Query: 386 agctcggccccgaccgcctgcgcctgcaccaggtggtctggccgggctcccacgactccg 445 ||||||| || || || |||||| |||||||| |||| |||||||| | |||||||| | Sbjct: 35912 agctcgggccggagcggctgcgcgtgcaccagctggtgtggccggggacgcacgactcgg 35853 Query: 446 ccaccaacaagatcggcatccccttcatcgcccgccccttcgcgcagtgccagtcgctct 505 | || ||||||||||||||||| ||| | | |||||||||||||||||||||||||| | Sbjct: 35852 cgacgaacaagatcggcatcccgttcgtgacgcgccccttcgcgcagtgccagtcgctgt 35793 Query: 506 cctgctaccaccagctcgccctcggctgccgcctcctcgacgtccgcgtgcaggaggagc 565 | ||| | ||||||||| ||| |||| || ||||||| ||||| |||||||||| Sbjct: 35792 cggtgtacgagcagctcgccgcgggcgcccgcgtcatcgacgtgcgcgtccaggaggagc 35733 Query: 566 gccgcgtctgccacggcgtgctcgccacctactcggtcgac 606 | ||||||||||||||||||||||| |||||||| |||||| Sbjct: 35732 ggcgcgtctgccacggcgtgctcgcaacctactccgtcgac 35692 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 226 aacccgctggacgccatgggcgccttctcctcggcgcagatgaaccggcgcaagctggtc 285 ||||| ||||| |||||||||||||||| |||| ||||| ||||||| || ||||||||| Sbjct: 36072 aaccctctggaagccatgggcgccttcttctcgtcgcaggtgaaccgccggaagctggtc 36013 Query: 286 acca 289 |||| Sbjct: 36012 acca 36009
>dbj|AK065856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043D02, full insert sequence Length = 1213 Score = 184 bits (93), Expect = 2e-43 Identities = 234/281 (83%) Strand = Plus / Plus Query: 326 gcggcgacgagttccccggctgcgcccaccgccccgccgaccgcaagacgtggatgtccg 385 ||||||| | |||||||||| ||| ||||| || |||||||| |||||||||||| | | Sbjct: 133 gcggcgaggcgttccccggcagcgagcaccggccggccgaccggaagacgtggatggcgg 192 Query: 386 agctcggccccgaccgcctgcgcctgcaccaggtggtctggccgggctcccacgactccg 445 ||||||| || || || |||||| |||||||| |||| |||||||| | |||||||| | Sbjct: 193 agctcgggccggagcggctgcgcgtgcaccagctggtgtggccggggacgcacgactcgg 252 Query: 446 ccaccaacaagatcggcatccccttcatcgcccgccccttcgcgcagtgccagtcgctct 505 | || ||||||||||||||||| ||| | | |||||||||||||||||||||||||| | Sbjct: 253 cgacgaacaagatcggcatcccgttcgtgacgcgccccttcgcgcagtgccagtcgctgt 312 Query: 506 cctgctaccaccagctcgccctcggctgccgcctcctcgacgtccgcgtgcaggaggagc 565 | ||| | ||||||||| ||| |||| || ||||||| ||||| |||||||||| Sbjct: 313 cggtgtacgagcagctcgccgcgggcgcccgcgtcatcgacgtgcgcgtccaggaggagc 372 Query: 566 gccgcgtctgccacggcgtgctcgccacctactcggtcgac 606 | ||||||||||||||||||||||| |||||||| |||||| Sbjct: 373 ggcgcgtctgccacggcgtgctcgcaacctactccgtcgac 413 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 226 aacccgctggacgccatgggcgccttctcctcggcgcagatgaaccggcgcaagctggtc 285 ||||| ||||| |||||||||||||||| |||| ||||| ||||||| || ||||||||| Sbjct: 33 aaccctctggaagccatgggcgccttcttctcgtcgcaggtgaaccgccggaagctggtc 92 Query: 286 acca 289 |||| Sbjct: 93 acca 96
>dbj|AK061726.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-B04, full insert sequence Length = 1477 Score = 184 bits (93), Expect = 2e-43 Identities = 234/281 (83%) Strand = Plus / Plus Query: 326 gcggcgacgagttccccggctgcgcccaccgccccgccgaccgcaagacgtggatgtccg 385 ||||||| | |||||||||| ||| ||||| || |||||||| |||||||||||| | | Sbjct: 363 gcggcgaggcgttccccggcagcgagcaccggccggccgaccggaagacgtggatggcgg 422 Query: 386 agctcggccccgaccgcctgcgcctgcaccaggtggtctggccgggctcccacgactccg 445 ||||||| || || || |||||| |||||||| |||| |||||||| | |||||||| | Sbjct: 423 agctcgggccggagcggctgcgcgtgcaccagctggtgtggccggggacgcacgactcgg 482 Query: 446 ccaccaacaagatcggcatccccttcatcgcccgccccttcgcgcagtgccagtcgctct 505 | || ||||||||||||||||| ||| | | |||||||||||||||||||||||||| | Sbjct: 483 cgacgaacaagatcggcatcccgttcgtgacgcgccccttcgcgcagtgccagtcgctgt 542 Query: 506 cctgctaccaccagctcgccctcggctgccgcctcctcgacgtccgcgtgcaggaggagc 565 | ||| | ||||||||| ||| |||| || ||||||| ||||| |||||||||| Sbjct: 543 cggtgtacgagcagctcgccgcgggcgcccgcgtcatcgacgtgcgcgtccaggaggagc 602 Query: 566 gccgcgtctgccacggcgtgctcgccacctactcggtcgac 606 | ||||||||||||||||||||||| |||||||| |||||| Sbjct: 603 ggcgcgtctgccacggcgtgctcgcaacctactccgtcgac 643 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 226 aacccgctggacgccatgggcgccttctcctcggcgcagatgaaccggcgcaagctggtc 285 ||||| ||||| |||||||||||||||| |||| ||||| ||||||| || ||||||||| Sbjct: 263 aaccctctggaagccatgggcgccttcttctcgtcgcaggtgaaccgccggaagctggtc 322 Query: 286 acca 289 |||| Sbjct: 323 acca 326
>gb|AY112292.1| Zea mays CL379_2 mRNA sequence Length = 1061 Score = 103 bits (52), Expect = 7e-19 Identities = 166/204 (81%) Strand = Plus / Plus Query: 403 ctgcgcctgcaccaggtggtctggccgggctcccacgactccgccaccaacaagatcggc 462 |||||| ||||||||||||| ||||| ||| | |||||||| |||||| || ||||||| Sbjct: 442 ctgcgcgtgcaccaggtggtgtggcccggcacgcacgactcggccaccgaccggatcggc 501 Query: 463 atccccttcatcgcccgccccttcgcgcagtgccagtcgctctcctgctaccaccagctc 522 | || ||| | |||||||||||||||||||||||||||| ||| ||| | ||||| Sbjct: 502 gtgccgttcgtgacccgccccttcgcgcagtgccagtcgctgtccgtgtacgagcagctg 561 Query: 523 gccctcggctgccgcctcctcgacgtccgcgtgcaggaggagcgccgcgtctgccacggc 582 || || ||| ||| |||||||||| ||||| ||| ||| ||||||||| ||||||||| Sbjct: 562 gcgctgggcgcgcgcgtcctcgacgtgcgcgtccagaaggggcgccgcgtatgccacggc 621 Query: 583 gtgctcgccacctactcggtcgac 606 || || ||||| ||| | |||||| Sbjct: 622 gtcctggccacgtaccccgtcgac 645 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 238 gccatgggcgccttctcctcggcgcagatgaaccggcgcaagctggt 284 |||||||||||||||| |||| |||| || ||||||| |||||||| Sbjct: 277 gccatgggcgccttcttctcgaagcaggtggaccggcggaagctggt 323
>gb|AY105723.1| Zea mays PCO102084 mRNA sequence Length = 1551 Score = 83.8 bits (42), Expect = 6e-13 Identities = 84/98 (85%) Strand = Plus / Plus Query: 403 ctgcgcctgcaccaggtggtctggccgggctcccacgactccgccaccaacaagatcggc 462 |||||| ||||||||||||| ||||| ||| | |||||||| |||||||||||||||||| Sbjct: 525 ctgcgcgtgcaccaggtggtgtggcccggcacgcacgactcggccaccaacaagatcggc 584 Query: 463 atccccttcatcgcccgccccttcgcgcagtgccagtc 500 | || | | ||||||||||||||||||||||||| Sbjct: 585 gtgccgctggtgacccgccccttcgcgcagtgccagtc 622 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 542 tcgacgtccgcgtgcaggaggagcgccgcgtctgccacggc 582 ||||||| |||||||||||||||||||| |||||||||||| Sbjct: 664 tcgacgtgcgcgtgcaggaggagcgccgggtctgccacggc 704 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 226 aacccgctggacgccatgggcgccttctcctcggcgcagatgaaccggcgcaagctggtc 285 ||||||||||| |||||||||||||||| |||| |||| || ||||||| |||||||| Sbjct: 348 aacccgctggaagccatgggcgccttcttctcgaagcaggtggaccggcggaagctggtg 407 Query: 286 accac 290 ||||| Sbjct: 408 accac 412
>emb|CR555308.1| Azoarcus sp. EbN1 plasmid 2 Length = 223670 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 125 cggcgacgacgacgtcgcgcgc 146 |||||||||||||||||||||| Sbjct: 41836 cggcgacgacgacgtcgcgcgc 41815
>emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genome; segment 11/16 Length = 349635 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 311 agcgctgcacctcctgcggcga 332 |||||||||||||||||||||| Sbjct: 115922 agcgctgcacctcctgcggcga 115901
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 348 cgcccaccgccccgccgaccgc 369 |||||||||||||||||||||| Sbjct: 295094 cgcccaccgccccgccgaccgc 295073
>ref|XM_753517.1| Ustilago maydis 521 hypothetical protein (UM02463.1) partial mRNA Length = 1041 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 290 cgcagaagctggccatgtccg 310 ||||||||||||||||||||| Sbjct: 628 cgcagaagctggccatgtccg 608
>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02, complete sequence Length = 173171 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 126 ggcgacgacgacgtcgcgcgcgcgt 150 ||||||||||||| ||||||||||| Sbjct: 83679 ggcgacgacgacgacgcgcgcgcgt 83655
>gb|AC021893.18|AC021893 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0060A14, from chromosome 10, complete sequence Length = 151343 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 129 gacgacgacgtcgcgcgcgcg 149 ||||||||||||||||||||| Sbjct: 70174 gacgacgacgtcgcgcgcgcg 70154
>tpg|BK000092.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group) cellulose synthase-like A2 gene, complete cds Length = 10800 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 129 gacgacgacgtcgcgcgcgcg 149 ||||||||||||||||||||| Sbjct: 10587 gacgacgacgtcgcgcgcgcg 10607
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 126 ggcgacgacgacgtcgcgcgcgcgt 150 ||||||||||||| ||||||||||| Sbjct: 24963094 ggcgacgacgacgacgcgcgcgcgt 24963070
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 129 gacgacgacgtcgcgcgcgcg 149 ||||||||||||||||||||| Sbjct: 13377797 gacgacgacgtcgcgcgcgcg 13377777
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 124 acggcgacgacgacgtcgcgc 144 ||||||||||||||||||||| Sbjct: 21395115 acggcgacgacgacgtcgcgc 21395095
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 124 acggcgacgacgacgtcgcgc 144 ||||||||||||||||||||| Sbjct: 4928097 acggcgacgacgacgtcgcgc 4928077
>dbj|AP004144.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1712_E04 Length = 110098 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 124 acggcgacgacgacgtcgcgc 144 ||||||||||||||||||||| Sbjct: 55068 acggcgacgacgacgtcgcgc 55048
>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete sequence Length = 148644 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 126 ggcgacgacgacgtcgcgcgcgcgt 150 ||||||||||||| ||||||||||| Sbjct: 91314 ggcgacgacgacgacgcgcgcgcgt 91290
>emb|AJ704003.1| Uncultured bacterium partial nosZ gene for nitrous-oxide reductase, clone C-B1 Length = 398 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cggcgacgacgacgtcgcgcg 145 ||||||||||||||||||||| Sbjct: 90 cggcgacgacgacgtcgcgcg 70
>emb|AJ704001.1| Uncultured bacterium partial nosZ gene for nitrous-oxide reductase, clone C-A3 Length = 339 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cggcgacgacgacgtcgcgcg 145 ||||||||||||||||||||| Sbjct: 31 cggcgacgacgacgtcgcgcg 11
>emb|AJ703953.1| Uncultured bacterium partial nosZ gene for nitrous-oxide reductase, clone B-C1 Length = 848 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cggcgacgacgacgtcgcgcg 145 ||||||||||||||||||||| Sbjct: 538 cggcgacgacgacgtcgcgcg 518
>emb|AJ703901.1| Uncultured bacterium partial nosZ gene for nitrous-oxide reductase, clone A4-1 Length = 1125 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cggcgacgacgacgtcgcgcg 145 ||||||||||||||||||||| Sbjct: 817 cggcgacgacgacgtcgcgcg 797
>emb|AJ704206.1| Uncultured bacterium partial nosZ gene for nitrous-oxide reductase, clone nZL-47 Length = 1125 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cggcgacgacgacgtcgcgcg 145 ||||||||||||||||||||| Sbjct: 817 cggcgacgacgacgtcgcgcg 797
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 129 gacgacgacgtcgcgcgcgcg 149 ||||||||||||||||||||| Sbjct: 13385137 gacgacgacgtcgcgcgcgcg 13385117
>gb|BT017054.1| Zea mays clone EL01N0355H08.c mRNA sequence Length = 955 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 gacgacgacgtcgcgcgcgc 148 |||||||||||||||||||| Sbjct: 147 gacgacgacgtcgcgcgcgc 128
>ref|NM_193414.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1326 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 cgacgacgacgtcgcgcgcg 147 |||||||||||||||||||| Sbjct: 475 cgacgacgacgtcgcgcgcg 456
>ref|XM_469600.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2604 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 gctagctagctagccgagcc 56 |||||||||||||||||||| Sbjct: 2159 gctagctagctagccgagcc 2140
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 gcgacgacgacgtcgcgcgc 146 |||||||||||||||||||| Sbjct: 2601079 gcgacgacgacgtcgcgcgc 2601098
>ref|NM_015946.4| Homo sapiens pelota homolog (Drosophila) (PELO), mRNA Length = 2941 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 catcgcccgccccttcgcgc 490 |||||||||||||||||||| Sbjct: 192 catcgcccgccccttcgcgc 173
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 gctagctagctagccgagcc 56 |||||||||||||||||||| Sbjct: 29303082 gctagctagctagccgagcc 29303101
>gb|AC145380.3| Oryza sativa chromosome 3 BAC OSJNBa0013A09 genomic sequence, complete sequence Length = 139788 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 gctagctagctagccgagcc 56 |||||||||||||||||||| Sbjct: 52918 gctagctagctagccgagcc 52899
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 tccccggctgcgcccaccgc 357 |||||||||||||||||||| Sbjct: 3438116 tccccggctgcgcccaccgc 3438135
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 cgacgagttccccggctgcg 349 |||||||||||||||||||| Sbjct: 1782167 cgacgagttccccggctgcg 1782148
>ref|NG_002793.1| Homo sapiens pelota/integrin, alpha 1 region (PELO/ITGA1@) on chromosome 5 Length = 166541 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 catcgcccgccccttcgcgc 490 |||||||||||||||||||| Sbjct: 366 catcgcccgccccttcgcgc 347
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 cgccaccaacaagatcggca 463 |||||||||||||||||||| Sbjct: 4796105 cgccaccaacaagatcggca 4796124
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 ccaccgccccgccgaccgca 370 |||||||||||||||||||| Sbjct: 3600485 ccaccgccccgccgaccgca 3600466
>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16 Length = 343473 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 ccgaccgcctgcgcctgcac 414 |||||||||||||||||||| Sbjct: 32466 ccgaccgcctgcgcctgcac 32447
>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16 Length = 346287 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 gcgctgcacctcctgcggcg 331 |||||||||||||||||||| Sbjct: 342243 gcgctgcacctcctgcggcg 342224
>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14 Length = 346259 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 ccgaccgcctgcgcctgcac 414 |||||||||||||||||||| Sbjct: 297389 ccgaccgcctgcgcctgcac 297370 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 gcgctgcacctcctgcggcg 331 |||||||||||||||||||| Sbjct: 261083 gcgctgcacctcctgcggcg 261064
>emb|BX640421.1| Bordetella pertussis strain Tohama I, complete genome; segment 11/12 Length = 349726 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 ccgaccgcctgcgcctgcac 414 |||||||||||||||||||| Sbjct: 27355 ccgaccgcctgcgcctgcac 27374
>emb|BX572595.1| Rhodopseudomonas palustris CGA009 complete genome; segment 3/16 Length = 349260 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 cgccaccaacaagatcggca 463 |||||||||||||||||||| Sbjct: 332561 cgccaccaacaagatcggca 332542
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 gcgacgacgacgtcgcgcgc 146 |||||||||||||||||||| Sbjct: 781121 gcgacgacgacgtcgcgcgc 781140
>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29 Length = 276800 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 gggcgccttctcctcggcgc 262 |||||||||||||||||||| Sbjct: 96247 gggcgccttctcctcggcgc 96266
>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29 Length = 298450 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 cggcgacgacgacgtcgcgc 144 |||||||||||||||||||| Sbjct: 87609 cggcgacgacgacgtcgcgc 87590
>emb|CR603721.1| full-length cDNA clone CS0DI042YM10 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1312 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 catcgcccgccccttcgcgc 490 |||||||||||||||||||| Sbjct: 185 catcgcccgccccttcgcgc 166
>dbj|AK056144.1| Homo sapiens cDNA FLJ31582 fis, clone NT2RI2002117, moderately similar to PELOTA PROTEIN Length = 2323 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 catcgcccgccccttcgcgc 490 |||||||||||||||||||| Sbjct: 192 catcgcccgccccttcgcgc 173
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 tcggccccgaccgcctgcgc 408 |||||||||||||||||||| Sbjct: 3881707 tcggccccgaccgcctgcgc 3881726
>ref|NM_198773.1| Rattus norvegicus protein phosphatase 1E (PP2C domain containing) (Ppm1e), mRNA Length = 2743 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 520 ctcgccctcggctgccgcctcctc 543 |||||||||||| ||||||||||| Sbjct: 405 ctcgccctcggccgccgcctcctc 382
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 cgccaccaacaagatcggca 463 |||||||||||||||||||| Sbjct: 5069133 cgccaccaacaagatcggca 5069152
>gb|AC026230.5|AC026230 Homo sapiens chromosome 5 clone CTD-2288O8, complete sequence Length = 114802 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 catcgcccgccccttcgcgc 490 |||||||||||||||||||| Sbjct: 58365 catcgcccgccccttcgcgc 58346
>gb|AC011758.6|AC011758 Drosophila melanogaster, chromosome X, region 19C-19E, BAC clone BACR25I22, complete sequence Length = 164942 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 gtcttcctcccccaatagca 208 |||||||||||||||||||| Sbjct: 79099 gtcttcctcccccaatagca 79118
>gb|DQ075211.1| Homo sapiens c-src tyrosine kinase (CSK) gene, complete cds Length = 24576 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 gctggtcaccacgcagaagc 298 |||||||||||||||||||| Sbjct: 19174 gctggtcaccacgcagaagc 19155
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 122 tcacggcgacgacgacgtcgcgcgcgcg 149 ||||||||||| ||||| |||||||||| Sbjct: 13133202 tcacggcgacggcgacggcgcgcgcgcg 13133229
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 gctagctagctagccgagcc 56 |||||||||||||||||||| Sbjct: 29394504 gctagctagctagccgagcc 29394523
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 cgacgacgacgtcgcgcgcg 147 |||||||||||||||||||| Sbjct: 20702833 cgacgacgacgtcgcgcgcg 20702852
>dbj|AP003933.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0066C06 Length = 162304 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 cgacgacgacgtcgcgcgcg 147 |||||||||||||||||||| Sbjct: 45791 cgacgacgacgtcgcgcgcg 45810
>dbj|AP004258.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0024F24 Length = 172642 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 cgacgacgacgtcgcgcgcg 147 |||||||||||||||||||| Sbjct: 164809 cgacgacgacgtcgcgcgcg 164828
>gb|AC008910.5|AC008910 Homo sapiens chromosome 5 clone CTD-2267A1, complete sequence Length = 78303 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 catcgcccgccccttcgcgc 490 |||||||||||||||||||| Sbjct: 14288 catcgcccgccccttcgcgc 14269
>gb|AY117399.1| Homo sapiens pelota major mRNA, complete cds; alternatively spliced Length = 2939 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 catcgcccgccccttcgcgc 490 |||||||||||||||||||| Sbjct: 192 catcgcccgccccttcgcgc 173
>gb|AC091230.23| Homo sapiens chromosome 15, clone RP11-414J4, complete sequence Length = 206482 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 gctggtcaccacgcagaagc 298 |||||||||||||||||||| Sbjct: 74371 gctggtcaccacgcagaagc 74390
>gb|AY113753.1| Uncultured bacterium clone D110 putative dissimilatory membrane-bound nitrate reductase (narG) gene, partial cds Length = 649 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 513 ccaccagctcgccctcggctgccgcctc 540 ||||| ||| |||||||||||||||||| Sbjct: 310 ccaccggcttgccctcggctgccgcctc 283
>gb|AY113749.1| Uncultured bacterium clone D135 putative dissimilatory membrane-bound nitrate reductase (narG) gene, partial cds Length = 648 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 513 ccaccagctcgccctcggctgccgcctc 540 ||||| ||| |||||||||||||||||| Sbjct: 310 ccaccggcttgccctcggctgccgcctc 283
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 ccgccaccaacaagatcggc 462 |||||||||||||||||||| Sbjct: 4058037 ccgccaccaacaagatcggc 4058018
>gb|AC107787.14| Mus musculus chromosome 1, clone RP23-432F10, complete sequence Length = 212943 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 tctggccatgtcttcctccc 199 |||||||||||||||||||| Sbjct: 143337 tctggccatgtcttcctccc 143356
>dbj|AB081729.1| Rattus norvegicus mRNA for calmodulin-dependent protein kinase phosphatase N, complete cds Length = 2743 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 520 ctcgccctcggctgccgcctcctc 543 |||||||||||| ||||||||||| Sbjct: 405 ctcgccctcggccgccgcctcctc 382
>dbj|AK107637.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-131-E10, full insert sequence Length = 1378 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 gctagctagctagccgagcc 56 |||||||||||||||||||| Sbjct: 1023 gctagctagctagccgagcc 1004
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 512 accaccagctcgccctcggc 531 |||||||||||||||||||| Sbjct: 5463169 accaccagctcgccctcggc 5463188 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 cttcatcgcccgccccttcg 487 |||||||||||||||||||| Sbjct: 1807566 cttcatcgcccgccccttcg 1807547
>gb|AY111713.1| Zea mays CL9204_1 mRNA sequence Length = 605 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 atccaccgctagctagctag 49 |||||||||||||||||||| Sbjct: 241 atccaccgctagctagctag 260
>emb|CR762056.2| Xenopus tropicalis finished cDNA, clone TEgg143l19 Length = 1049 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 tgatatttttgcgccattaatcga 89 |||| ||||||||||||||||||| Sbjct: 721 tgatttttttgcgccattaatcga 744
>gb|AE003571.4| Drosophila melanogaster chromosome X, section 68 of 74 of the complete sequence Length = 302538 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 gtcttcctcccccaatagca 208 |||||||||||||||||||| Sbjct: 181291 gtcttcctcccccaatagca 181310
>gb|AC167667.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940123D9, complete sequence Length = 121336 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 521 tcgccctcggctgccgcctc 540 |||||||||||||||||||| Sbjct: 10177 tcgccctcggctgccgcctc 10158
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 gcgacgacgacgtcgcgcgc 146 |||||||||||||||||||| Sbjct: 2230190 gcgacgacgacgtcgcgcgc 2230171
>gb|AC174596.2| Mus musculus BAC clone RP24-411K2 from chromosome 1, complete sequence Length = 154216 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 tctggccatgtcttcctccc 199 |||||||||||||||||||| Sbjct: 6773 tctggccatgtcttcctccc 6754
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 cgcccaccgccccgccgacc 367 |||||||||||||||||||| Sbjct: 892598 cgcccaccgccccgccgacc 892579
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 122 tcacggcgacgacgacgtcgcgcgcgcg 149 ||||||||||| ||||| |||||||||| Sbjct: 13087476 tcacggcgacggcgacggcgcgcgcgcg 13087503
>emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 178827 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 122 tcacggcgacgacgacgtcgcgcgcgcg 149 ||||||||||| ||||| |||||||||| Sbjct: 122405 tcacggcgacggcgacggcgcgcgcgcg 122432
>emb|CT485730.1| Xenopus tropicalis finished cDNA, clone TGas042c21 Length = 1151 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 tgatatttttgcgccattaatcga 89 |||| ||||||||||||||||||| Sbjct: 835 tgatttttttgcgccattaatcga 858
>gb|AC002070.1|HSAC002070 Human BAC clone 7E17 from 12q, complete sequence Length = 165197 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 ctccaacaaaatcaaccatg 24 |||||||||||||||||||| Sbjct: 144368 ctccaacaaaatcaaccatg 144387
>emb|X74765.1|HSCSKPTK Homo sapiens CSK gene for protein tyrosine kinase Length = 5653 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 gctggtcaccacgcagaagc 298 |||||||||||||||||||| Sbjct: 1443 gctggtcaccacgcagaagc 1424
>dbj|D16507.1|RICOSH1 Oryza sativa (japonica cultivar-group) OSH1 gene for homeobox protein Length = 2598 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 gctagctagctagccgagcc 56 |||||||||||||||||||| Sbjct: 2159 gctagctagctagccgagcc 2140 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,861,378 Number of Sequences: 3902068 Number of extensions: 3861378 Number of successful extensions: 91229 Number of sequences better than 10.0: 81 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88401 Number of HSP's gapped (non-prelim): 2828 length of query: 606 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 583 effective length of database: 17,143,297,704 effective search space: 9994542561432 effective search space used: 9994542561432 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
