ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart46a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KPK19_ARATH (Q39030) Serine/threonine-protein kinase AtPK19 (EC ... 36 0.081
2DPOL_HHV7J (P52342) DNA polymerase (EC 2.7.7.7) 32 1.2
3SAPS1_MOUSE (Q7TSI3) SAPS domain family member 1 31 2.6
4TRA1_CAEEL (P34708) Sex-determining transformer protein 1 (Herma... 30 4.4
5CR034_HUMAN (Q5BJE1) Protein C18orf34 30 5.8
6EXOC6_CAEEL (Q18286) Probable exocyst complex component 6 (Exocy... 30 5.8
7TAT_SIVVG (P27982) TAT protein (Transactivating regulatory protein) 30 7.6
8PURA_HELPY (P56137) Adenylosuccinate synthetase (EC 6.3.4.4) (IM... 30 7.6
9PURA_HELPJ (Q9ZMI1) Adenylosuccinate synthetase (EC 6.3.4.4) (IM... 30 7.6
10LIPL_CAVPO (P11153) Lipoprotein lipase precursor (EC 3.1.1.34) (... 29 9.9

>KPK19_ARATH (Q39030) Serine/threonine-protein kinase AtPK19 (EC 2.7.11.1)|
           (Ribosomal-protein S6 kinase homolog)
          Length = 471

 Score = 36.2 bits (82), Expect = 0.081
 Identities = 26/83 (31%), Positives = 33/83 (39%)
 Frame = +1

Query: 373 MVSSQTSSLAVKLAQGPKLLTTKIIFPMDPLGVVSSENAEYDFSDVFGSSPVETATELCV 552
           MVSSQ S       Q  K     +   + P   V  +N E  FSDVFG  P   + E C 
Sbjct: 1   MVSSQCS--VANKNQTGKPFQKHLSLSISPPKSVLGDNLELQFSDVFGPMPEANSEEACD 58

Query: 553 VDPDSPAAPVESTEEVYNDPAVI 621
           V  D PA     +  +     V+
Sbjct: 59  VAYDEPAVVYSRSHSLVGPSLVV 81



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>DPOL_HHV7J (P52342) DNA polymerase (EC 2.7.7.7)|
          Length = 1012

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +3

Query: 84  ARFLLHESRKNIGIKQVIFSRK*QYRFDLPFRRILGQFLAETSTCSRPLFT-VAYHFTSL 260
           A+  L++ ++N+  K++      ++      R ++G++  + S     LFT + YH+   
Sbjct: 442 AKLCLNQEKENLSYKEI----PKKFIDGSKGRAVVGRYCIQDSLLVVQLFTKINYHYEMA 497

Query: 261 EVVKLAYLRMQCS 299
           EV  LAY+ ++C+
Sbjct: 498 EVASLAYITIRCA 510



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>SAPS1_MOUSE (Q7TSI3) SAPS domain family member 1|
          Length = 856

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +1

Query: 418 GPKLLTTKIIFPMD-PLGVVSSENAEYDFSDVFGSSPVETATELCVVDPDSPAAPVESTE 594
           GP    T    PMD P G   S+ A+     +  S P   + +L   DP  P+AP E T+
Sbjct: 705 GPSWTATFDTVPMDAPTGPPVSKEADMSSIQIPSSPPAHGSPQLRSQDPTHPSAPQEVTD 764



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>TRA1_CAEEL (P34708) Sex-determining transformer protein 1 (Hermaphrodization|
           of XO animals protein 2)
          Length = 1110

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = -2

Query: 550 HKALLPSR--LDWNQKHQRNHIQH---FQRRQHPGDP 455
           HKA+  +R  LDWN+ HQ +++ H   F R +H   P
Sbjct: 734 HKAIPITRRPLDWNETHQLHNLYHDPRFNRAEHQDSP 770



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>CR034_HUMAN (Q5BJE1) Protein C18orf34|
          Length = 867

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -2

Query: 589 WTQRELQGCLDQQHKALLPS--RLDWNQKHQRNHIQHFQRRQ 470
           W  +EL   + ++H+A L     L W+ + + N +QHF++++
Sbjct: 208 WKLQELPLAVQKEHEAYLSDVIELQWHLEDKANQLQHFEKQK 249



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>EXOC6_CAEEL (Q18286) Probable exocyst complex component 6 (Exocyst complex|
           component Sec15)
          Length = 817

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = -1

Query: 584 STGAAGLSGSTTQSSVAVSTGLEPKTSEKSYSAFSEETTPRGSMGKIIFVVRSFGPCASF 405
           ST     +GS T S+  V+      ++E+ Y  +  ETT  GSMG ++  +   G   SF
Sbjct: 6   STSQPATTGSETASTSYVN--YVEMSAEQEYFLYELETTDSGSMGLVLRAIYDTGDVQSF 63



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>TAT_SIVVG (P27982) TAT protein (Transactivating regulatory protein)|
          Length = 119

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -2

Query: 238 TVNKGREQVEVSARNCPSILRKGRSKR 158
           T  KG+E+VE SAR  PS+ RK  +++
Sbjct: 84  TTQKGQEKVETSARTAPSLGRKNLAQQ 110



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>PURA_HELPY (P56137) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 411

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 13/48 (27%)
 Frame = -1

Query: 563 SGSTTQSSVAVSTGLEPKTSE------KSYSAF-------SEETTPRG 459
           S +TT +S  VSTGL PK         K+YS         SE+TTP G
Sbjct: 231 SSNTTSASACVSTGLNPKAINEVIGITKAYSTRVGNGPFPSEDTTPMG 278



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>PURA_HELPJ (Q9ZMI1) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 411

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 13/48 (27%)
 Frame = -1

Query: 563 SGSTTQSSVAVSTGLEPKTSE------KSYSAF-------SEETTPRG 459
           S +TT +S  VSTGL PK         K+YS         SE+TTP G
Sbjct: 231 SSNTTSASACVSTGLNPKAINEVIGITKAYSTRVGNGPFPSEDTTPMG 278



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>LIPL_CAVPO (P11153) Lipoprotein lipase precursor (EC 3.1.1.34) (LPL)|
          Length = 465

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
 Frame = -1

Query: 575 AAGLSGSTTQSSVAVSTGLEPKTSEKSYSAFSEETTP-------------RGSMGKIIFV 435
           AAG++GS T + V+  TGL+P      Y+  +   +P             RGS G+ I +
Sbjct: 154 AAGVAGSRTNTKVSRITGLDPAGPNFEYAEATSRLSPDDAQFVDVLHTFTRGSPGRSIGI 213

Query: 434 VRSFG 420
            +  G
Sbjct: 214 QKPVG 218


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,406,036
Number of Sequences: 219361
Number of extensions: 1728106
Number of successful extensions: 5294
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5288
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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