ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart46a01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 63.9 bits (32), Expect = 6e-07 Identities = 110/136 (80%) Strand = Plus / Plus Query: 477 ctctgaaaatgctgaatatgatttctctgatgtttttggttccagtccagtcgagacggc 536 ||||||||||| ||| | ||||||||||||||||||||| ||| |||||| ||||| | Sbjct: 28803991 ctctgaaaatgatgagtttgatttctctgatgtttttggcaccactccagttcagacgcc 28804050 Query: 537 aacagagctttgtgttgttgatccagacagccctgcagctcccgttgagtccactgagga 596 ||||| ||| || | || ||||||||| |||||| || | |||||||| ||||| Sbjct: 28804051 aacaggcatttcggtagctggtccagacagtcctgcacctttggctgagtccaatgaggg 28804110 Query: 597 ggtttataatgatcct 612 |||||| ||||||||| Sbjct: 28804111 ggtttacaatgatcct 28804126 Score = 61.9 bits (31), Expect = 2e-06 Identities = 86/103 (83%), Gaps = 1/103 (0%) Strand = Plus / Plus Query: 119 tggcatcaagcaagtcatattcagcaggaaatagcagtatcgttttgatctgccttttcg 178 ||||||| |||| || |||||||||||||| ||||| || | ||| ||||||| || | Sbjct: 28803636 tggcatccagcatctcctattcagcaggaaagagcagcattttcttgctctgcctctttg 28803695 Query: 179 caggatacttgggcaattcctagcggaaacttcaacttgctca 221 ||||||||||||| ||||||| || |||| ||| ||||||||| Sbjct: 28803696 caggatacttggg-aattcctggccgaaaattccacttgctca 28803737 Score = 48.1 bits (24), Expect = 0.035 Identities = 27/28 (96%) Strand = Plus / Plus Query: 372 gatggtttcttctcagacgtcctctctg 399 |||||||||||||||||| ||||||||| Sbjct: 28803889 gatggtttcttctcagacatcctctctg 28803916
>dbj|AP005243.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1205_F02 Length = 112862 Score = 63.9 bits (32), Expect = 6e-07 Identities = 110/136 (80%) Strand = Plus / Plus Query: 477 ctctgaaaatgctgaatatgatttctctgatgtttttggttccagtccagtcgagacggc 536 ||||||||||| ||| | ||||||||||||||||||||| ||| |||||| ||||| | Sbjct: 111552 ctctgaaaatgatgagtttgatttctctgatgtttttggcaccactccagttcagacgcc 111611 Query: 537 aacagagctttgtgttgttgatccagacagccctgcagctcccgttgagtccactgagga 596 ||||| ||| || | || ||||||||| |||||| || | |||||||| ||||| Sbjct: 111612 aacaggcatttcggtagctggtccagacagtcctgcacctttggctgagtccaatgaggg 111671 Query: 597 ggtttataatgatcct 612 |||||| ||||||||| Sbjct: 111672 ggtttacaatgatcct 111687 Score = 61.9 bits (31), Expect = 2e-06 Identities = 86/103 (83%), Gaps = 1/103 (0%) Strand = Plus / Plus Query: 119 tggcatcaagcaagtcatattcagcaggaaatagcagtatcgttttgatctgccttttcg 178 ||||||| |||| || |||||||||||||| ||||| || | ||| ||||||| || | Sbjct: 111197 tggcatccagcatctcctattcagcaggaaagagcagcattttcttgctctgcctctttg 111256 Query: 179 caggatacttgggcaattcctagcggaaacttcaacttgctca 221 ||||||||||||| ||||||| || |||| ||| ||||||||| Sbjct: 111257 caggatacttggg-aattcctggccgaaaattccacttgctca 111298 Score = 48.1 bits (24), Expect = 0.035 Identities = 27/28 (96%) Strand = Plus / Plus Query: 372 gatggtttcttctcagacgtcctctctg 399 |||||||||||||||||| ||||||||| Sbjct: 111450 gatggtttcttctcagacatcctctctg 111477
>dbj|AP005099.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0008J01 Length = 159900 Score = 63.9 bits (32), Expect = 6e-07 Identities = 110/136 (80%) Strand = Plus / Plus Query: 477 ctctgaaaatgctgaatatgatttctctgatgtttttggttccagtccagtcgagacggc 536 ||||||||||| ||| | ||||||||||||||||||||| ||| |||||| ||||| | Sbjct: 61677 ctctgaaaatgatgagtttgatttctctgatgtttttggcaccactccagttcagacgcc 61736 Query: 537 aacagagctttgtgttgttgatccagacagccctgcagctcccgttgagtccactgagga 596 ||||| ||| || | || ||||||||| |||||| || | |||||||| ||||| Sbjct: 61737 aacaggcatttcggtagctggtccagacagtcctgcacctttggctgagtccaatgaggg 61796 Query: 597 ggtttataatgatcct 612 |||||| ||||||||| Sbjct: 61797 ggtttacaatgatcct 61812 Score = 61.9 bits (31), Expect = 2e-06 Identities = 86/103 (83%), Gaps = 1/103 (0%) Strand = Plus / Plus Query: 119 tggcatcaagcaagtcatattcagcaggaaatagcagtatcgttttgatctgccttttcg 178 ||||||| |||| || |||||||||||||| ||||| || | ||| ||||||| || | Sbjct: 61322 tggcatccagcatctcctattcagcaggaaagagcagcattttcttgctctgcctctttg 61381 Query: 179 caggatacttgggcaattcctagcggaaacttcaacttgctca 221 ||||||||||||| ||||||| || |||| ||| ||||||||| Sbjct: 61382 caggatacttggg-aattcctggccgaaaattccacttgctca 61423 Score = 48.1 bits (24), Expect = 0.035 Identities = 27/28 (96%) Strand = Plus / Plus Query: 372 gatggtttcttctcagacgtcctctctg 399 |||||||||||||||||| ||||||||| Sbjct: 61575 gatggtttcttctcagacatcctctctg 61602
>dbj|AK066191.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051C07, full insert sequence Length = 2598 Score = 63.9 bits (32), Expect = 6e-07 Identities = 110/136 (80%) Strand = Plus / Plus Query: 477 ctctgaaaatgctgaatatgatttctctgatgtttttggttccagtccagtcgagacggc 536 ||||||||||| ||| | ||||||||||||||||||||| ||| |||||| ||||| | Sbjct: 1088 ctctgaaaatgatgagtttgatttctctgatgtttttggcaccactccagttcagacgcc 1147 Query: 537 aacagagctttgtgttgttgatccagacagccctgcagctcccgttgagtccactgagga 596 ||||| ||| || | || ||||||||| |||||| || | |||||||| ||||| Sbjct: 1148 aacaggcatttcggtagctggtccagacagtcctgcacctttggctgagtccaatgaggg 1207 Query: 597 ggtttataatgatcct 612 |||||| ||||||||| Sbjct: 1208 ggtttacaatgatcct 1223 Score = 61.9 bits (31), Expect = 2e-06 Identities = 86/103 (83%), Gaps = 1/103 (0%) Strand = Plus / Plus Query: 119 tggcatcaagcaagtcatattcagcaggaaatagcagtatcgttttgatctgccttttcg 178 ||||||| |||| || |||||||||||||| ||||| || | ||| ||||||| || | Sbjct: 733 tggcatccagcatctcctattcagcaggaaagagcagcattttcttgctctgcctctttg 792 Query: 179 caggatacttgggcaattcctagcggaaacttcaacttgctca 221 ||||||||||||| ||||||| || |||| ||| ||||||||| Sbjct: 793 caggatacttggg-aattcctggccgaaaattccacttgctca 834 Score = 48.1 bits (24), Expect = 0.035 Identities = 27/28 (96%) Strand = Plus / Plus Query: 372 gatggtttcttctcagacgtcctctctg 399 |||||||||||||||||| ||||||||| Sbjct: 986 gatggtttcttctcagacatcctctctg 1013
>gb|AY389497.1| Zea mays cultivar Chalqueno ribosomal protein S6 kinase mRNA, complete cds Length = 1861 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 472 gtctcctctgaaaatgctgaatatgatttctctgatgtttttggttcca 520 |||||||| || |||| ||| || ||||||||||||||||||||||||| Sbjct: 257 gtctcctcagataatgttgagtacgatttctctgatgtttttggttcca 305 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 167 tctgccttttcgcaggatacttggg 191 ||||||||||||| ||||||||||| Sbjct: 37 tctgccttttcgcgggatacttggg 61
>emb|AL513263.9| Human DNA sequence from clone CTB-1189H8 on chromosome 1 Contains the 3' end of the SYT14 gene for synaptotagmin XIV, complete sequence Length = 125553 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 496 gatttctctgatgtttttggtt 517 |||||||||||||||||||||| Sbjct: 82480 gatttctctgatgtttttggtt 82501
>emb|BX950179.6| Zebrafish DNA sequence from clone DKEY-27P23 in linkage group 5, complete sequence Length = 235445 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 467 gtgttgtctcctctgaaaatgctgaa 492 |||||| ||||||||||||||||||| Sbjct: 124925 gtgttgcctcctctgaaaatgctgaa 124950
>emb|BX119985.7| Zebrafish DNA sequence from clone CH211-270B10 in linkage group 11, complete sequence Length = 172959 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 467 gtgttgtctcctctgaaaatgctgaa 492 |||||| ||||||||||||||||||| Sbjct: 123280 gtgttgcctcctctgaaaatgctgaa 123305
>emb|BX510933.4| Zebrafish DNA sequence from clone CH211-271G16 in linkage group 4, complete sequence Length = 151440 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 467 gtgttgtctcctctgaaaatgctgaa 492 |||||| ||||||||||||||||||| Sbjct: 114684 gtgttgcctcctctgaaaatgctgaa 114709
>gb|AC123055.3| Mus musculus BAC clone RP24-267D17 from chromosome 3, complete sequence Length = 187323 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 227 tttgttcacagtggcatatcatttt 251 |||||||||||||| |||||||||| Sbjct: 64555 tttgttcacagtggaatatcatttt 64531
>emb|AL157789.6|CNS01RG6 Human chromosome 14 DNA sequence BAC R-880O3 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 225603 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 337 ggagctgccatccctggctgcattg 361 ||||||||| ||||||||||||||| Sbjct: 90797 ggagctgccgtccctggctgcattg 90821
>gb|AC135237.6| Mus musculus BAC clone RP23-306F11 from chromosome 3, complete sequence Length = 199436 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 227 tttgttcacagtggcatatcatttt 251 |||||||||||||| |||||||||| Sbjct: 192618 tttgttcacagtggaatatcatttt 192594
>ref|XM_639000.1| Dictyostelium discoideum hypothetical protein (DDB0217526), partial mRNA Length = 2226 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 atgatttctctgatgttttt 513 |||||||||||||||||||| Sbjct: 43 atgatttctctgatgttttt 24
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 29 gccgcgcccggaggtcgccggcac 52 |||||||||||||||| ||||||| Sbjct: 679209 gccgcgcccggaggtcaccggcac 679232
>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome Length = 3481691 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 cacggctcgcacctcggcgt 69 |||||||||||||||||||| Sbjct: 492332 cacggctcgcacctcggcgt 492351
>gb|AF043693.1| Caenorhabditis elegans cosmid C34B2, complete sequence Length = 33448 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 tgatttctctgatgtttttg 514 |||||||||||||||||||| Sbjct: 22343 tgatttctctgatgtttttg 22362
>emb|CT030080.2| Xenopus tropicalis finished cDNA, clone TEgg007g03 Length = 2263 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 557 atccagacagccctgcagctcccg 580 ||||||| |||||||||||||||| Sbjct: 945 atccagaaagccctgcagctcccg 922
>emb|CT009594.4| Mouse DNA sequence from clone RP23-146J6 on chromosome 17, complete sequence Length = 176432 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 tatgatttctctgatgtttt 512 |||||||||||||||||||| Sbjct: 144651 tatgatttctctgatgtttt 144632
>gb|AC123028.4| Mus musculus BAC clone RP24-553H21 from chromosome 10, complete sequence Length = 175143 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 acagagctttgtgttgttga 557 |||||||||||||||||||| Sbjct: 79986 acagagctttgtgttgttga 80005
>gb|U28732.1| Caenorhabditis elegans cosmid F45E1, complete sequence Length = 38122 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 gcaattcctagcggaaacttcaac 214 ||||||||| |||||||||||||| Sbjct: 593 gcaattccttgcggaaacttcaac 616
>emb|AL513366.11| Human DNA sequence from clone CTD-2522E6 on chromosome X Contains the RGN gene for regucalcin (senescence marker protein-30) (RC, SMP30), the gene for neuronal protein 17.3 (P17.3), the RBM10 gene for RNA binding motif protein 10 (MGC997, MGC1132, DXS8237E, KIAA0122), an inositol 1,3,4-triphosphate 5/6 kinase (ITPK1) pseudogene, the UBE1 gene for ubiquitin-activating enzyme E1 (A1S9T and BN75 temperature sensitivity complementing) (A1S9, A1ST, GXP1, A1S9T, UBE1X, MGC4781), the 5' UTR of the PCTK1 gene for PCTAIRE protein kinase 1 and five CpG islands, complete sequence Length = 145456 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 tacaaagataattttcccca 454 |||||||||||||||||||| Sbjct: 75960 tacaaagataattttcccca 75941
>emb|AL136451.17| Human DNA sequence from clone RP11-162M1 on chromosome 10, complete sequence Length = 124392 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 472 gtctcctctgaaaatgctga 491 |||||||||||||||||||| Sbjct: 53822 gtctcctctgaaaatgctga 53803
>emb|AL031053.1|HS267M20 Human DNA sequence from clone RP1-267M20 on chromosome Xq22.2-22.3, complete sequence Length = 167943 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 tagatggtttcttctcagac 389 |||||||||||||||||||| Sbjct: 155344 tagatggtttcttctcagac 155325
>gb|AC162911.2| Mus musculus BAC clone RP24-363M14 from chromosome 12, complete sequence Length = 150202 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 tcattagtttcagtaagttg 324 |||||||||||||||||||| Sbjct: 89798 tcattagtttcagtaagttg 89779
>gb|AC158799.8| Mus musculus BAC RP24-430K11 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 161705 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 acagagctttgtgttgttga 557 |||||||||||||||||||| Sbjct: 12762 acagagctttgtgttgttga 12743
>gb|AC090666.6| Homo sapiens chromosome 18, clone RP11-116K4, complete sequence Length = 185255 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 gtcctctctggcagtaaagc 409 |||||||||||||||||||| Sbjct: 74064 gtcctctctggcagtaaagc 74083
>ref|NM_172486.1| Mus musculus RIKEN cDNA A830058L05 gene (A830058L05Rik), mRNA Length = 2913 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 tatgatttctctgatgtttt 512 |||||||||||||||||||| Sbjct: 1205 tatgatttctctgatgtttt 1186
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 atttctctgatgtttttggt 516 |||||||||||||||||||| Sbjct: 4688044 atttctctgatgtttttggt 4688025 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 497 atttctctgatgtttttggt 516 |||||||||||||||||||| Sbjct: 4118772 atttctctgatgtttttggt 4118791 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 atttctctgatgtttttggt 516 |||||||||||||||||||| Sbjct: 3701446 atttctctgatgtttttggt 3701427
>dbj|AK043955.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830058L05 product:similar to DNA-BINDING PROTEIN (FRAGMENT) [Homo sapiens], full insert sequence Length = 2913 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 tatgatttctctgatgtttt 512 |||||||||||||||||||| Sbjct: 1205 tatgatttctctgatgtttt 1186
>gb|AC007339.8| Homo sapiens chromosome 16 clone RP11-305A7, complete sequence Length = 183646 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 agttggagacttgccctgga 339 |||||||||||||||||||| Sbjct: 146760 agttggagacttgccctgga 146779
>gb|AC116957.2| Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence Length = 405682 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 atgatttctctgatgttttt 513 |||||||||||||||||||| Sbjct: 337670 atgatttctctgatgttttt 337651
>gb|AC009491.3|AC009491 Homo sapiens BAC clone RP11-418M8 from Y, complete sequence Length = 140934 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 490 gaatatgatttctctgatgt 509 |||||||||||||||||||| Sbjct: 93740 gaatatgatttctctgatgt 93721
>ref|NM_001011448.1| Xenopus tropicalis hypothetical LOC496936 (LOC496936), mRNA Length = 2240 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 557 atccagacagccctgcagctcccg 580 ||||||| |||||||||||||||| Sbjct: 906 atccagaaagccctgcagctcccg 883
>gb|AF107093.1|AF107093 Rhodobacter sphaeroides cytidylate monophosphate kinase (cmk), ribosomal protein S1 (rpsA1), integration host factor beta-subunit (hipB), N-(5'-phosphoribosyl)anthranilate isomerase (trpF), putative aromatic pathway regulator (aroR), and tryptophan synthase beta chain (trpB) genes, complete cds; and unknown gene Length = 6203 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 29 gccgcgcccggaggtcgccggcac 52 |||||||||||||||| ||||||| Sbjct: 4919 gccgcgcccggaggtcaccggcac 4896
>gb|BC057947.1| Mus musculus RIKEN cDNA A830058L05 gene, mRNA (cDNA clone MGC:67713 IMAGE:5344769), complete cds Length = 2926 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 tatgatttctctgatgtttt 512 |||||||||||||||||||| Sbjct: 1181 tatgatttctctgatgtttt 1162
>emb|BX005369.11| Zebrafish DNA sequence from clone CH211-51H13 in linkage group 3, complete sequence Length = 187523 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 505 gatgtttttggttccagtccagtc 528 |||||||||| ||||||||||||| Sbjct: 25720 gatgtttttgcttccagtccagtc 25697
>emb|CT027556.11| Mouse DNA sequence from clone RP23-405M23 on chromosome 12, complete sequence Length = 209313 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 tcattagtttcagtaagttg 324 |||||||||||||||||||| Sbjct: 117486 tcattagtttcagtaagttg 117505
>gb|BC088538.1| Xenopus tropicalis hypothetical LOC496936, mRNA (cDNA clone MGC:97665 IMAGE:6981191), complete cds Length = 2240 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 557 atccagacagccctgcagctcccg 580 ||||||| |||||||||||||||| Sbjct: 906 atccagaaagccctgcagctcccg 883
>emb|AL357094.4|CNS05TDT Human chromosome 14 DNA sequence BAC R-14N4 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 158151 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 atatcattttacatccttgg 261 |||||||||||||||||||| Sbjct: 82558 atatcattttacatccttgg 82539 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,509,673 Number of Sequences: 3902068 Number of extensions: 5509673 Number of successful extensions: 96946 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96807 Number of HSP's gapped (non-prelim): 139 length of query: 623 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 600 effective length of database: 17,143,297,704 effective search space: 10285978622400 effective search space used: 10285978622400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
