ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart45h06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_189652.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1098 Score = 351 bits (177), Expect = 1e-93 Identities = 306/349 (87%) Strand = Plus / Plus Query: 180 gcctcgacgagttcctgtcggccgtgcggtcggagcgggcgtcccgggtggagccgctgc 239 ||||||||| ||||||| ||||||||||||||| |||||||| |||||||||||||| Sbjct: 122 gcctcgacgcgttcctggacgccgtgcggtcggagagggcgtccacggtggagccgctgc 181 Query: 240 tgcgggaggcaggggcggtgctgctgcgcgggttccccgcgcggacggcggcggacttcg 299 |||||| || || ||||||||||| ||||||||||| ||||| | ||||||||||||| Sbjct: 182 tgcggggcgccggcgcggtgctgctccgcgggttcccggcgcgcgccgcggcggacttcg 241 Query: 300 acgccgccgtggaggcgttcgggtacgaggagctgccctacgtcggcggcgcggcgcccc 359 || ||||||||| || |||||||||| |||||| ||||||||||||||||| || || | Sbjct: 242 accgcgccgtggacgccttcgggtacgcggagctcccctacgtcggcggcgccgccccgc 301 Query: 360 ggaccaacgtcgtcggccgggtgttcaccgccaacgagtcaccgcccgaccagaagatcc 419 ||| |||||| || || || || ||||||||||||||||| ||||||||||||||||||| Sbjct: 302 ggagcaacgtggtggggcgtgtcttcaccgccaacgagtcgccgcccgaccagaagatcc 361 Query: 420 ccttccaccacgaaatggcgcagattccgacttttccggcgaagctgttcttcttctgtg 479 ||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||| | Sbjct: 362 ccttccaccacgagatggcgcaggttccgacatttccggcgaagctgttcttcttctgcg 421 Query: 480 aggtggagccaaaaagtggtggagagacaccaatagtgctgagccacta 528 ||||||| || || | |||||| |||||||| |||||| |||||||||| Sbjct: 422 aggtggaaccgaagattggtggtgagacaccgatagtgttgagccacta 470 Score = 101 bits (51), Expect = 2e-18 Identities = 54/55 (98%) Strand = Plus / Plus Query: 95 ctcccggagcagcggctcgtcgagggcgtcgccttccccgcggtgctcgtcccga 149 |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 40 ctcccggagcagcggctcgtcgagggcgtcgccttcccggcggtgctcgtcccga 94
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 260 bits (131), Expect = 4e-66 Identities = 230/263 (87%) Strand = Plus / Plus Query: 180 gcctcgacgagttcctgtcggccgtgcggtcggagcgggcgtcccgggtggagccgctgc 239 ||||||||| ||||||| ||||||||||||||| |||||||| |||||||||||||| Sbjct: 4799378 gcctcgacgcgttcctggacgccgtgcggtcggagagggcgtccacggtggagccgctgc 4799437 Query: 240 tgcgggaggcaggggcggtgctgctgcgcgggttccccgcgcggacggcggcggacttcg 299 |||||| || || ||||||||||| ||||||||||| ||||| | ||||||||||||| Sbjct: 4799438 tgcggggcgccggcgcggtgctgctccgcgggttcccggcgcgcgccgcggcggacttcg 4799497 Query: 300 acgccgccgtggaggcgttcgggtacgaggagctgccctacgtcggcggcgcggcgcccc 359 || ||||||||| || |||||||||| |||||| ||||||||||||||||| || || | Sbjct: 4799498 accgcgccgtggacgccttcgggtacgcggagctcccctacgtcggcggcgccgccccgc 4799557 Query: 360 ggaccaacgtcgtcggccgggtgttcaccgccaacgagtcaccgcccgaccagaagatcc 419 ||| |||||| || || || || ||||||||||||||||| ||||||||||||||||||| Sbjct: 4799558 ggagcaacgtggtggggcgtgtcttcaccgccaacgagtcgccgcccgaccagaagatcc 4799617 Query: 420 ccttccaccacgaaatggcgcag 442 ||||||||||||| ||||||||| Sbjct: 4799618 ccttccaccacgagatggcgcag 4799640 Score = 101 bits (51), Expect = 2e-18 Identities = 54/55 (98%) Strand = Plus / Plus Query: 95 ctcccggagcagcggctcgtcgagggcgtcgccttccccgcggtgctcgtcccga 149 |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 4799296 ctcccggagcagcggctcgtcgagggcgtcgccttcccggcggtgctcgtcccga 4799350 Score = 97.6 bits (49), Expect = 4e-17 Identities = 76/85 (89%) Strand = Plus / Plus Query: 444 ttccgacttttccggcgaagctgttcttcttctgtgaggtggagccaaaaagtggtggag 503 ||||||| |||||||||||||||||||||||||| |||||||| || || | |||||| | Sbjct: 4799759 ttccgacatttccggcgaagctgttcttcttctgcgaggtggaaccgaagattggtggtg 4799818 Query: 504 agacaccaatagtgctgagccacta 528 ||||||| |||||| |||||||||| Sbjct: 4799819 agacaccgatagtgttgagccacta 4799843
>dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0710E05 Length = 179714 Score = 260 bits (131), Expect = 4e-66 Identities = 230/263 (87%) Strand = Plus / Plus Query: 180 gcctcgacgagttcctgtcggccgtgcggtcggagcgggcgtcccgggtggagccgctgc 239 ||||||||| ||||||| ||||||||||||||| |||||||| |||||||||||||| Sbjct: 44027 gcctcgacgcgttcctggacgccgtgcggtcggagagggcgtccacggtggagccgctgc 44086 Query: 240 tgcgggaggcaggggcggtgctgctgcgcgggttccccgcgcggacggcggcggacttcg 299 |||||| || || ||||||||||| ||||||||||| ||||| | ||||||||||||| Sbjct: 44087 tgcggggcgccggcgcggtgctgctccgcgggttcccggcgcgcgccgcggcggacttcg 44146 Query: 300 acgccgccgtggaggcgttcgggtacgaggagctgccctacgtcggcggcgcggcgcccc 359 || ||||||||| || |||||||||| |||||| ||||||||||||||||| || || | Sbjct: 44147 accgcgccgtggacgccttcgggtacgcggagctcccctacgtcggcggcgccgccccgc 44206 Query: 360 ggaccaacgtcgtcggccgggtgttcaccgccaacgagtcaccgcccgaccagaagatcc 419 ||| |||||| || || || || ||||||||||||||||| ||||||||||||||||||| Sbjct: 44207 ggagcaacgtggtggggcgtgtcttcaccgccaacgagtcgccgcccgaccagaagatcc 44266 Query: 420 ccttccaccacgaaatggcgcag 442 ||||||||||||| ||||||||| Sbjct: 44267 ccttccaccacgagatggcgcag 44289 Score = 101 bits (51), Expect = 2e-18 Identities = 54/55 (98%) Strand = Plus / Plus Query: 95 ctcccggagcagcggctcgtcgagggcgtcgccttccccgcggtgctcgtcccga 149 |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 43945 ctcccggagcagcggctcgtcgagggcgtcgccttcccggcggtgctcgtcccga 43999 Score = 97.6 bits (49), Expect = 4e-17 Identities = 76/85 (89%) Strand = Plus / Plus Query: 444 ttccgacttttccggcgaagctgttcttcttctgtgaggtggagccaaaaagtggtggag 503 ||||||| |||||||||||||||||||||||||| |||||||| || || | |||||| | Sbjct: 44408 ttccgacatttccggcgaagctgttcttcttctgcgaggtggaaccgaagattggtggtg 44467 Query: 504 agacaccaatagtgctgagccacta 528 ||||||| |||||| |||||||||| Sbjct: 44468 agacaccgatagtgttgagccacta 44492
>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence Length = 1212674 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 244 ggaggcaggggcggtgctgctgcgcgg 270 ||||||| ||||||||||||||||||| Sbjct: 69989 ggaggcaagggcggtgctgctgcgcgg 70015
>ref|XM_842586.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0656) partial mRNA Length = 4731 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 244 ggaggcaggggcggtgctgctgcgcgg 270 ||||||| ||||||||||||||||||| Sbjct: 1356 ggaggcaagggcggtgctgctgcgcgg 1330
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 205 gcggtcggagcgggcgtcccgg 226 |||||||||||||||||||||| Sbjct: 730256 gcggtcggagcgggcgtcccgg 730277
>gb|DQ088847.1| Uncultured bacterium MedeBAC46A06 clone MedeBAC46A06, partial sequence Length = 68835 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Plus Query: 452 tttccggcgaagctgttcttcttctg 477 |||||||||| ||||||||||||||| Sbjct: 29753 tttccggcgatgctgttcttcttctg 29778
>gb|AF484556.1| Streptomyces atroolivaceus leinamycin biosynthetic gene cluster, complete sequence Length = 135638 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 246 aggcaggggcggtgctgctgcgcgg 270 |||| |||||||||||||||||||| Sbjct: 28276 aggccggggcggtgctgctgcgcgg 28300
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 296 ttcgacgccgccgtggaggcg 316 ||||||||||||||||||||| Sbjct: 607427 ttcgacgccgccgtggaggcg 607407
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 252 gggcggtgctgctgcgcgggt 272 ||||||||||||||||||||| Sbjct: 2579200 gggcggtgctgctgcgcgggt 2579180 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 285 cggcggcggacttcgacgccgccg 308 ||||||||||||||| |||||||| Sbjct: 4051271 cggcggcggacttcgccgccgccg 4051294
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 332 ctgccctacgtcggcggcgcggcgc 356 ||||||||||||| ||||||||||| Sbjct: 348120 ctgccctacgtcgtcggcgcggcgc 348096
>emb|CR974477.12| Pig DNA sequence from clone CH242-217L7 on chromosome 17, complete sequence Length = 204661 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 220 gtcccgggtggagccgctgctgcgg 244 |||||||||||||| |||||||||| Sbjct: 106530 gtcccgggtggagctgctgctgcgg 106506
>gb|AC166111.4| Mus musculus BAC clone RP23-68O7 from chromosome 1, complete sequence Length = 185692 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 accgggagaggggagcctcg 185 |||||||||||||||||||| Sbjct: 94436 accgggagaggggagcctcg 94417
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 gctgccctacgtcggcggcg 350 |||||||||||||||||||| Sbjct: 856535 gctgccctacgtcggcggcg 856554
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 297 tcgacgccgccgtggaggcgttcg 320 ||||||| |||||||||||||||| Sbjct: 3927454 tcgacgcagccgtggaggcgttcg 3927431
>gb|AY596296.1| Haloarcula marismortui ATCC 43049 plasmid pNG700, complete sequence Length = 410554 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 297 tcgacgccgccgtggaggcgttcg 320 ||||||||| |||||||||||||| Sbjct: 308819 tcgacgccggcgtggaggcgttcg 308842
>gb|AF357202.1| Streptomyces nodosus amphotericin biosynthetic gene cluster, complete sequence Length = 113193 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 ggcgcccgtggcgggcagca 74 |||||||||||||||||||| Sbjct: 36634 ggcgcccgtggcgggcagca 36615
>gb|AC148235.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0036H01, complete sequence Length = 182504 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 cgggaccgggagaggggagc 181 |||||||||||||||||||| Sbjct: 30228 cgggaccgggagaggggagc 30247
>gb|AY456696.1| Arthrobacter aurescens strain TC1 plasmid pAA1 atrazine catabolic region, partial sequence Length = 161264 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 ggacttcgacgccgccgtgg 311 |||||||||||||||||||| Sbjct: 114944 ggacttcgacgccgccgtgg 114963
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 gacttcgacgccgccgtgga 312 |||||||||||||||||||| Sbjct: 2705229 gacttcgacgccgccgtgga 2705210
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 281 cggacggcggcggacttcgacgccgccg 308 |||||||||||||||| |||||| |||| Sbjct: 3584135 cggacggcggcggactccgacgcggccg 3584162
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 7.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 284 acggcggcggacttcgacgccgccgtggaggc 315 |||||||| || ||||||||||||||||||| Sbjct: 318099 acggcggctgagatcgacgccgccgtggaggc 318130
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 gtggcgggcagcagcttctt 81 |||||||||||||||||||| Sbjct: 3158957 gtggcgggcagcagcttctt 3158938
>emb|AL121845.20|HSJ583P15 Human DNA sequence from clone RP4-583P15 on chromosome 20 Contains the 3' end of the TNFRSF6B gene for member 6 (decoy) of tumor necrosis factor receptor, the ARFRP1 gene for ADP-ribosylation factor related protein 1, the gene for a novel protein (KIAA1847, FLJ14972), the gene for a novel protein (FLJ20406), the SLC2A4RG gene for SLC2A4 regulator (GEF), the 3' end of the BTBD4 gene for BTB (POZ) domain containing 4, a novel gene and ten CpG islands, complete sequence Length = 120917 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 gctgctgcgggaggcagggg 254 |||||||||||||||||||| Sbjct: 5396 gctgctgcgggaggcagggg 5415
>emb|BX248360.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 7/8 Length = 349659 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 481 ggtggagccaaaaagtggtg 500 |||||||||||||||||||| Sbjct: 167631 ggtggagccaaaaagtggtg 167650
>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29 Length = 302007 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 ggccgtgcggtcggagcggg 218 |||||||||||||||||||| Sbjct: 101438 ggccgtgcggtcggagcggg 101457
>gb|AF293355.2| Streptomyces collinus DSM2012 rubrinomycin gene cluster, complete sequence Length = 32634 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 ccgggtggagccgctgctgcggga 246 |||| ||||||||||||||||||| Sbjct: 5598 ccggctggagccgctgctgcggga 5621
>gb|AC145335.15| Pan troglodytes clone rp43-26k12, complete sequence Length = 208895 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ggctcccggagcagcggctc 112 |||||||||||||||||||| Sbjct: 68897 ggctcccggagcagcggctc 68878
>emb|BX546474.8| Zebrafish DNA sequence from clone DKEY-120L3 in linkage group 17, complete sequence Length = 179463 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 tcttcttctgtgaggtggag 487 |||||||||||||||||||| Sbjct: 149180 tcttcttctgtgaggtggag 149161
>dbj|AB161702.1| Zoysia tenuifolia mRNA for betaine aldehyde dehydrogenase, complete cds, clone:2 Length = 1802 Score = 40.1 bits (20), Expect = 7.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 284 acggcggcggacttcgacgccgccgtggaggc 315 ||||||| |||| |||||||||||||| |||| Sbjct: 157 acggcggaggacatcgacgccgccgtgaaggc 188
>gb|AC159214.2| Pan troglodytes BAC clone CH251-522M3 from chromosome unknown, complete sequence Length = 190101 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ggctcccggagcagcggctc 112 |||||||||||||||||||| Sbjct: 104773 ggctcccggagcagcggctc 104754
>gb|AF043491.1|AF043491 Oryctolagus cuniculus prostaglandin E2 receptor subtype EP1 mRNA, partial cds Length = 781 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 cgcggctcccggagcagcggctcg 113 ||||||||||||||| |||||||| Sbjct: 266 cgcggctcccggagcggcggctcg 289
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 289 ggcggacttcgacgccgccgtggaggcg 316 |||||| |||| |||||||||||||||| Sbjct: 17709720 ggcggagttcgtcgccgccgtggaggcg 17709747
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 cgggaccgggagaggggagc 181 |||||||||||||||||||| Sbjct: 12137844 cgggaccgggagaggggagc 12137825
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 281 cggacggcggcggacttcgacgccgccg 308 |||||||||||||||| |||||| |||| Sbjct: 3584246 cggacggcggcggactccgacgcggccg 3584273
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 283 gacggcggcggacttcgacgccgccgtg 310 ||||||||||||| | |||||||||||| Sbjct: 1112512 gacggcggcggacatggacgccgccgtg 1112539
>gb|AC016759.11| Homo sapiens BAC clone RP11-535J8 from 2, complete sequence Length = 219574 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 tcttctgtgaggtggagcca 490 |||||||||||||||||||| Sbjct: 210072 tcttctgtgaggtggagcca 210053
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 agcagcggctcgtcgagggcgtcg 125 |||||||||||||||||| ||||| Sbjct: 4840516 agcagcggctcgtcgaggtcgtcg 4840539
>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0026H19, complete sequence Length = 150620 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 281 cggacggcggcggacttcgacgccgccg 308 |||||||||||||||| |||||| |||| Sbjct: 101788 cggacggcggcggactccgacgcggccg 101815
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 258 tgctgctgcgcgggttccccgcgcggac 285 |||||||||| | ||||||||||||||| Sbjct: 3805847 tgctgctgcgggtgttccccgcgcggac 3805820
>gb|AC108391.14| Mus musculus chromosome 1, clone RP23-16N14, complete sequence Length = 257730 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 accgggagaggggagcctcg 185 |||||||||||||||||||| Sbjct: 48489 accgggagaggggagcctcg 48470
>gb|AF217796.1|AF217796 Homo sapiens SCG10 like-protein, helicase-like protein NHL, M68, and ADP-ribosylation factor related protein 1 (ARFRP1) genes, complete cds Length = 114793 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 gctgctgcgggaggcagggg 254 |||||||||||||||||||| Sbjct: 90864 gctgctgcgggaggcagggg 90883
>gb|AY530950.1| Zea mays putative zinc finger protein (Z438D03.1), unknown (Z438D03.5), epsilon-COP (Z438D03.6), putative kinase (Z438D03.7), unknown (Z438D03.25), and C1-B73 (Z438D03.27) genes, complete cds Length = 185988 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 330 agctgccctacgtcggcggcgcggcgcc 357 ||||||||| |||| ||||||||||||| Sbjct: 11389 agctgcccttcgtccgcggcgcggcgcc 11362
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 ggcggcgcggcgccccggac 363 |||||||||||||||||||| Sbjct: 1049408 ggcggcgcggcgccccggac 1049389
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 cgggaccgggagaggggagc 181 |||||||||||||||||||| Sbjct: 12217151 cgggaccgggagaggggagc 12217132
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 289 ggcggacttcgacgccgccgtggaggcg 316 |||||| |||| |||||||||||||||| Sbjct: 17664091 ggcggagttcgtcgccgccgtggaggcg 17664118
>emb|AL713909.5|CNS07YQ9 Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBa0073H17 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 113494 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 289 ggcggacttcgacgccgccgtggaggcg 316 |||||| |||| |||||||||||||||| Sbjct: 71633 ggcggagttcgtcgccgccgtggaggcg 71606
>gb|AC140461.4| Mus musculus BAC clone RP23-11M24 from 1, complete sequence Length = 202209 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 467 ttcttcttctgtgaggtggagcca 490 |||||| ||||||||||||||||| Sbjct: 130646 ttcttcatctgtgaggtggagcca 130623
>emb|Z54172.1|PSP16S23S Pyrococcus sp. 16S rRNA gene and partial 23S rRNA gene Length = 1784 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 153 gcgggcccccgggaccgggagagg 176 ||||||||| |||||||||||||| Sbjct: 598 gcgggcccctgggaccgggagagg 621 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,897,972 Number of Sequences: 3902068 Number of extensions: 3897972 Number of successful extensions: 96130 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93308 Number of HSP's gapped (non-prelim): 2822 length of query: 539 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 516 effective length of database: 17,143,297,704 effective search space: 8845941615264 effective search space used: 8845941615264 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
