>YIF1A_BRARE (Q6PC24) Protein YIF1A (YIP1-interacting factor homolog A)|
          Length = 307

 Score = 36.2 bits (82), Expect = 0.036
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +1

Query: 265 VYGEKFLGSSSEFMHSNITRYFS--NPQYYFHVNDQYVRNKLKVILFPFLHR 414
           +YG        + ++  I R+ S    +Y+F V+ +YV  KL +++FP+ H+
Sbjct: 75  MYGSTLANQGKDIVNKEINRFMSVNKLKYFFAVDTKYVMKKLLLLMFPYTHQ 126

>YIF1A_MOUSE (Q91XB7) Protein YIF1A (YIP1-interacting factor homolog A)|
          Length = 293

 Score = 35.4 bits (80), Expect = 0.062
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +1

Query: 268 YGEKFLGSSSEFMHSNITRYFS--NPQYYFHVNDQYVRNKLKVILFPFLHR 414
           YG        + +H  + R+ S    +Y+F V+  YV  KL +++FP+ H+
Sbjct: 66  YGTSIASQGKDIVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQ 116

>YIF1A_HUMAN (O95070) Protein YIF1A (YIP1-interacting factor homolog A) (54TMp)|
          Length = 293

 Score = 35.4 bits (80), Expect = 0.062
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +1

Query: 268 YGEKFLGSSSEFMHSNITRYFS--NPQYYFHVNDQYVRNKLKVILFPFLHR 414
           YG        + +H  + R+ S    +Y+F V+  YV  KL +++FP+ H+
Sbjct: 66  YGSSIASHGKDMVHKELHRFVSVSKLKYFFAVDTAYVAKKLGLLVFPYTHQ 116

>YIF1A_BOVIN (Q3T196) Protein YIF1A (YIP1-interacting factor homolog A)|
          Length = 293

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +1

Query: 268 YGEKFLGSSSEFMHSNITRYFS--NPQYYFHVNDQYVRNKLKVILFPFLHR 414
           YG        + M+  + R+ S    +Y+F V+  YV  KL +++FP+ H+
Sbjct: 66  YGSSIASHGKDMMNKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQ 116

>YIF1_YEAST (P53845) Protein YIF1 (YIP1-interacting factor 1)|
          Length = 314

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 17/30 (56%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +1

Query: 346 YFHVNDQYVRNKLKVILFPFLH-RGHWTRI 432
           YF V+ +YV NKLK+IL PFL+   +W RI
Sbjct: 107 YFQVSTRYVINKLKLILVPFLNGTKNWQRI 136

>NDOB_PSEFL (O07824) Naphthalene 1,2-dioxygenase alpha subunit (EC 1.14.12.12)|
           (Naphthalene 1,2-dioxygenase ISP alpha)
          Length = 449

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 244 DPSLRHTMDCRKGQAECLVGASASREDEDFCSYHTWSFSS 125
           D S+R  ++  + + + LV A A       CSYH W F S
Sbjct: 71  DGSIRAFLNVCRHRGKTLVNAEAGNAKGFVCSYHGWGFGS 110

>UXAB_BACTN (Q8A9J0) Altronate oxidoreductase (EC 1.1.1.58) (Tagaturonate|
           reductase) (Tagaturonate dehydrogenase)
          Length = 479

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 420 VPPVKERKQYDFQLVPDILIIHMEVVLWVGEVPSDIA 310
           +  +KE+ QYD  LV    I H    LWV E P ++A
Sbjct: 223 IAAIKEKIQYDDNLVVQAEIFH----LWVIEAPQEVA 255

>YN9D_YEAST (P53758) Hypothetical UPF0320 protein YNR077C|
          Length = 84

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 262 GVYGEKFLGSSSEFMHSNITRYFSNPQYYFHVNDQYVRNKLKVIL-FPFLH 411
           G+Y E F  +S ++ H NI   F  P+Y     + YV   L  IL   F+H
Sbjct: 8   GLYPEPFTHNSHDYPHFNIYISFGGPKYCITALNTYVIPLLHHILTTQFIH 58

>NDOB_PSEU8 (P0A111) Naphthalene 1,2-dioxygenase alpha subunit (EC 1.14.12.12)|
           (Naphthalene 1,2-dioxygenase ISP alpha)
          Length = 449

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 244 DPSLRHTMDCRKGQAECLVGASASREDEDFCSYHTWSFSS 125
           D S+R  ++  + + + LV   A       CSYH W F S
Sbjct: 71  DGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGS 110

>NDOB_PSEPU (P0A110) Naphthalene 1,2-dioxygenase alpha subunit (EC 1.14.12.12)|
           (Naphthalene 1,2-dioxygenase ISP alpha)
          Length = 449

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 244 DPSLRHTMDCRKGQAECLVGASASREDEDFCSYHTWSFSS 125
           D S+R  ++  + + + LV   A       CSYH W F S
Sbjct: 71  DGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGS 110

>NDOB_PSEAE (Q51494) Naphthalene 1,2-dioxygenase alpha subunit (EC 1.14.12.12)|
           (Naphthalene 1,2-dioxygenase ISP alpha)
          Length = 449

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 244 DPSLRHTMDCRKGQAECLVGASASREDEDFCSYHTWSFSS 125
           D S+R  ++  + + + LV A A       CSYH W F +
Sbjct: 71  DGSIRAFLNVCRHRGKTLVHAEAGNAKGFVCSYHGWGFGA 110

>PRIA_BUCAI (P57220) Primosomal protein N' (EC 3.6.1.-) (ATP-dependent helicase|
           priA) (Replication factor Y)
          Length = 726

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +1

Query: 274 EKFLGSSSEFMHSNIT--RYFSNPQYYFHVNDQYVRNKLKVILFPFLHRG 417
           EK+  +S + MHS +T  +YFSN     +  +  V    K I  PFL  G
Sbjct: 262 EKYFNASIDVMHSKLTSSKYFSNWVRTKNGENSIVIGTGKSIFLPFLKLG 311


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,764,234
Number of Sequences: 219361
Number of extensions: 1023186
Number of successful extensions: 2451
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2451
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)