>COPE_ARATH (O64748) Probable coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP)
          Length = 293

 Score =  220 bits (560), Expect = 3e-57
 Identities = 111/151 (73%), Positives = 128/151 (84%), Gaps = 2/151 (1%)
 Frame = +3

Query: 135 DLLFNLRNLFYLGAYQSAINNSDVPGLDADAAAERDVIVFRSYIALGSYQLVISEIDSSA 314
           D LFNLRN FYLGAYQ+AINNS++  L  + A ERD +VFRSYIALGSYQLVISEID SA
Sbjct: 9   DHLFNLRNNFYLGAYQTAINNSEIANLSPENAVERDCLVFRSYIALGSYQLVISEIDESA 68

Query: 315 ATSLQAVKLLALYLTG--DKEGAISSLKEWLSDSAIGSNPVLRLIDGIIFMHEQDYNEAL 488
           AT LQAVKLLA+YL+   +KE  ISSLKEWL+DS IG+N  LRLI GIIFMHE+DYNE L
Sbjct: 69  ATPLQAVKLLAMYLSTPQNKESTISSLKEWLADSTIGNNDTLRLIAGIIFMHEEDYNETL 128

Query: 489 KHTHTGGTLDLHALNVQIFLKMHRSDYADXQ 581
           KHTH GGT+DL+ALNVQIF+KMHR++YA+ Q
Sbjct: 129 KHTHAGGTMDLYALNVQIFIKMHRAEYAEKQ 159

>COPE_CRIGR (Q60445) Coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP) (LDLF)
          Length = 307

 Score = 95.9 bits (237), Expect = 7e-20
 Identities = 54/149 (36%), Positives = 87/149 (58%), Gaps = 3/149 (2%)
 Frame = +3

Query: 135 DLLFNLRNLFYLGAYQSAINNSDVPGLDA-DAAAERDVIVFRSYIALGSYQLVISEIDSS 311
           D LF+++N FY+G+YQ  IN +    L + D   ERDV ++R+YIA   Y +V+ EI  S
Sbjct: 16  DELFDVKNAFYIGSYQQCINEAQRVKLSSPDREVERDVFLYRAYIAQRKYGVVLDEIKPS 75

Query: 312 AATSLQAVKLLALYLTGD--KEGAISSLKEWLSDSAIGSNPVLRLIDGIIFMHEQDYNEA 485
           +A  LQAV++ A YL  +  ++  +  L   +S S   +N    L+   ++ H+Q+ + A
Sbjct: 76  SAPELQAVRMFADYLATENRRDAIVVELDREMSRSVDVTNTTFLLMAASVYFHDQNPDAA 135

Query: 486 LKHTHTGGTLDLHALNVQIFLKMHRSDYA 572
           L+  H G +L+  A+ +QI LK+ R D A
Sbjct: 136 LRTLHQGDSLECMAMTIQILLKLDRLDLA 164

>COPE_HUMAN (O14579) Coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP)
          Length = 307

 Score = 94.4 bits (233), Expect = 2e-19
 Identities = 53/149 (35%), Positives = 89/149 (59%), Gaps = 3/149 (2%)
 Frame = +3

Query: 135 DLLFNLRNLFYLGAYQSAINNSDVPGLDA-DAAAERDVIVFRSYIALGSYQLVISEIDSS 311
           D LF+++N FY+G+YQ  IN +    L + +   ERDV ++R+Y+A   + +V+ EI  S
Sbjct: 16  DELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPS 75

Query: 312 AATSLQAVKLLALYLTGD--KEGAISSLKEWLSDSAIGSNPVLRLIDGIIFMHEQDYNEA 485
           +A  LQAV++ A YL  +  ++  ++ L   +S S   +N    L+   I++H+Q+ + A
Sbjct: 76  SAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAA 135

Query: 486 LKHTHTGGTLDLHALNVQIFLKMHRSDYA 572
           L+  H G +L+  A+ VQI LK+ R D A
Sbjct: 136 LRALHQGDSLECTAMTVQILLKLDRLDLA 164

>COPE_MOUSE (O89079) Coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP)
          Length = 307

 Score = 94.0 bits (232), Expect = 3e-19
 Identities = 53/149 (35%), Positives = 86/149 (57%), Gaps = 3/149 (2%)
 Frame = +3

Query: 135 DLLFNLRNLFYLGAYQSAINNSDVPGLDA-DAAAERDVIVFRSYIALGSYQLVISEIDSS 311
           D LF+++N FY+G+YQ  IN +    L + +   ERDV ++R+Y+A   Y +V+ EI  S
Sbjct: 16  DELFDVKNAFYIGSYQQCINEAQRVKLSSPEREVERDVFLYRAYLAQRKYGVVLDEIKPS 75

Query: 312 AATSLQAVKLLALYLTGD--KEGAISSLKEWLSDSAIGSNPVLRLIDGIIFMHEQDYNEA 485
           +A  LQAV++ A YL  +  ++  +  L   +S S   +N    L+   I+ H+Q+ + A
Sbjct: 76  SAPELQAVRMFAEYLASENQRDSIVLELDREMSRSVDVTNTTFLLMAASIYFHDQNPDAA 135

Query: 486 LKHTHTGGTLDLHALNVQIFLKMHRSDYA 572
           L+  H G  L+  A+ +QI LK+ R D A
Sbjct: 136 LRTLHQGDGLECMAMTIQILLKLDRLDLA 164

>COPE_BOVIN (Q28104) Coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP)
          Length = 307

 Score = 92.8 bits (229), Expect = 6e-19
 Identities = 53/149 (35%), Positives = 86/149 (57%), Gaps = 3/149 (2%)
 Frame = +3

Query: 135 DLLFNLRNLFYLGAYQSAINNSD-VPGLDADAAAERDVIVFRSYIALGSYQLVISEIDSS 311
           D LF+++N FY+G+YQ  IN +  V     +   ERDV ++R+Y+A   Y +V+ EI  S
Sbjct: 16  DELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS 75

Query: 312 AATSLQAVKLLALYLTGD--KEGAISSLKEWLSDSAIGSNPVLRLIDGIIFMHEQDYNEA 485
           +A  LQAV++ A YL     ++  ++ L   +S S   +N    L+   I+ ++Q+ + A
Sbjct: 76  SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAA 135

Query: 486 LKHTHTGGTLDLHALNVQIFLKMHRSDYA 572
           L+  H G +L+  A+ VQI LK+ R D A
Sbjct: 136 LRTLHQGDSLECMAMTVQILLKLDRLDLA 164

>COPE_CAEEL (O62246) Probable coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP)
          Length = 292

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 5/151 (3%)
 Frame = +3

Query: 135 DLLFNLRNLFYLGAYQSAINNS-DVPGLDADAAAERDVIVFRSYIALGSYQLVISEIDSS 311
           D LF++RN F+LG+YQS I  +      + +   E+DV ++RSYIA G   + + EI ++
Sbjct: 3   DKLFSIRNYFFLGSYQSCIGEALKFSSKNEEEKQEKDVYLYRSYIAQGQAFIPLKEIPAA 62

Query: 312 A-ATSLQAVKLLALYLTGD--KEGAISSLKEWLSDSAIGSNPVLRLIDGIIFMHEQDYN- 479
             +  L AV+  A +      K+  ++ ++E ++   I S   +  +     ++E D + 
Sbjct: 63  TKSADLAAVRRYAEFRNNPAAKKKILAEVQEEVASRNIKSE--IAAVLAATILNEADLSQ 120

Query: 480 EALKHTHTGGTLDLHALNVQIFLKMHRSDYA 572
           +A +       L+  A  V I +KM++   A
Sbjct: 121 DAFRAVSRFEGLEARASKVFILIKMNKRKLA 151

>Y447_TREPA (O83461) Hypothetical protein TP0447 precursor|
          Length = 374

 Score = 32.7 bits (73), Expect = 0.78
 Identities = 23/72 (31%), Positives = 38/72 (52%)
 Frame = +3

Query: 279 YQLVISEIDSSAATSLQAVKLLALYLTGDKEGAISSLKEWLSDSAIGSNPVLRLIDGIIF 458
           Y L+ S  ++ A   L A+ L   +     + ++S L +WL DSA  + P   L+ G +F
Sbjct: 98  YALLKSRGETDACEVLDAIFLT--HAPHVFQNSVSKLLQWLKDSA--AFPEAELLLGKVF 153

Query: 459 MHEQDYNEALKH 494
             E +Y +AL+H
Sbjct: 154 EGEGEYAQALQH 165

>ECM33_YEAST (P38248) Extracellular matrix protein 33 precursor|
          Length = 469

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 21/151 (13%)
 Frame = +3

Query: 141 LFNLRNLFYLGAYQSAI----------NNSDVPGLDADAAAERDVIVFR--SYIALGSYQ 284
           +FN+ N  YL ++QS++          +N D   L  D     + I  R  + I+ GS Q
Sbjct: 166 VFNINNNRYLNSFQSSLESVSDSLQFSSNGDNTTLAFDNLVWANNITLRDVNSISFGSLQ 225

Query: 285 LVISE-------IDSSAATSLQAVKLLALYLTGDK--EGAISSLKEWLSDSAIGSNPVLR 437
            V +        + S   T L  V      ++ D+  + A S+L        I +N  L+
Sbjct: 226 TVNASLGFINNTLPSLNLTQLSKVGQSLSIVSNDELSKAAFSNLTTVGGGFIIANNTQLK 285

Query: 438 LIDGIIFMHEQDYNEALKHTHTGGTLDLHAL 530
           +IDG  F   Q    A++ T    TLDL +L
Sbjct: 286 VIDG--FNKVQTVGGAIEVTGNFSTLDLSSL 314

>IF2_MYCTU (P65131) Translation initiation factor IF-2|
          Length = 900

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 22/77 (28%), Positives = 38/77 (49%)
 Frame = +3

Query: 216 DADAAAERDVIVFRSYIALGSYQLVISEIDSSAATSLQAVKLLALYLTGDKEGAISSLKE 395
           D  +A +R+ +  RS       ++ + ++DS+    L+    L L L GD  G + +L+E
Sbjct: 667 DRRSARKRNALAARS-----RKRISLEDLDSA----LKETSQLNLILKGDNAGTVEALEE 717

Query: 396 WLSDSAIGSNPVLRLID 446
            L    +    VLR+ID
Sbjct: 718 ALMGIQVDDEVVLRVID 734

>IF2_MYCBO (P65132) Translation initiation factor IF-2|
          Length = 900

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 22/77 (28%), Positives = 38/77 (49%)
 Frame = +3

Query: 216 DADAAAERDVIVFRSYIALGSYQLVISEIDSSAATSLQAVKLLALYLTGDKEGAISSLKE 395
           D  +A +R+ +  RS       ++ + ++DS+    L+    L L L GD  G + +L+E
Sbjct: 667 DRRSARKRNALAARS-----RKRISLEDLDSA----LKETSQLNLILKGDNAGTVEALEE 717

Query: 396 WLSDSAIGSNPVLRLID 446
            L    +    VLR+ID
Sbjct: 718 ALMGIQVDDEVVLRVID 734

>YIT4_YEAST (P40570) Hypothetical protein YIR014W|
          Length = 242

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 17/37 (45%), Positives = 26/37 (70%)
 Frame = +3

Query: 282 QLVISEIDSSAATSLQAVKLLALYLTGDKEGAISSLK 392
           Q+VI  I+ S ++SLQ VKL+   L  ++EGA++ LK
Sbjct: 165 QIVI--INGSLSSSLQNVKLIVKELNAEEEGALNILK 199

>TTC5_RAT (Q5BK48) Tetratricopeptide repeat protein 5 (TPR repeat protein 5)|
          Length = 440

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
 Frame = +3

Query: 219 ADAAAERDVIVFRSYIALGS-YQLVISEIDSSAATSLQAVKLLALYLTGDKEGAISSLKE 395
           A  A + DV+  RS+  LG+ Y  +      +   S QA   L+ Y   +K         
Sbjct: 168 AKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA---LSAYAQAEKV-------- 216

Query: 396 WLSDSAIGSNPVLRLIDGIIFMHEQDYNEALKHTHTGGTLD 518
              D    SNP L L    +  +E+ Y EAL+      TLD
Sbjct: 217 ---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAATLD 254

>GP6D_CHLPS (Q46264) Virulence plasmid protein pGP6-D|
          Length = 246

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +3

Query: 246 IVFRS----YIALGSYQLVISEIDSSAATSLQAVKLLALYLTGDKEGAI 380
           +VFR+    Y ALG Y+L IS  D +  +  Q++     YL   ++G++
Sbjct: 112 LVFRTKSSAYNALGYYELFISLPDKNTKSLFQSIPYKTAYLLASRKGSV 160

>TOR1_YEAST (P35169) Phosphatidylinositol 3-kinase TOR1 (EC 2.7.1.137)|
            (PtdIns-3-kinase TOR1) (PI3-kinase TOR1) (PI3K TOR1)
          Length = 2470

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
 Frame = +3

Query: 255  RSYIALGSYQLVISEIDSSA--ATSLQAVKLLALYLTGDKEGAISSLKEW-LSDSAIG-- 419
            RS  ALG ++  +S++ +     + LQ  KL+A    G   G    L EW + +  I   
Sbjct: 1430 RSLHALGEWEQ-LSQLAARKWKVSKLQTKKLIAPLAAGAAWG----LGEWDMLEQYISVM 1484

Query: 420  --SNPVLRLIDGIIFMHEQDYNEALKH 494
               +P     D I+++H+ DY+ A KH
Sbjct: 1485 KPKSPDKEFFDAILYLHKNDYDNASKH 1511

>MOAA_METAC (Q8TUG2) Probable molybdenum cofactor biosynthesis protein A|
          Length = 334

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +3

Query: 273 GSYQLVISEIDSSAATSLQAVKLLALYLTGDKEGAISSLKEWLSDSAIGSNPVLRLID 446
           G+ + VI  IDS+    L  VKL  + L G  +  I ++ E++     G   +L+LI+
Sbjct: 155 GTLEKVIKGIDSAVEAGLTPVKLNMVLLKGVNDNEIDAMMEFI--RPYGGKVILQLIE 210

>DPO3A_MYCLE (Q9X7F0) DNA polymerase III alpha subunit (EC 2.7.7.7)|
          Length = 1177

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 32/105 (30%), Positives = 47/105 (44%)
 Frame = +3

Query: 135  DLLFNLRNLFYLGAYQSAINNSDVPGLDADAAAERDVIVFRSYIALGSYQLVISEIDSSA 314
            DL   +  +F+   Y S    +D+   DA       V+V    IAL + QLV+ +  +  
Sbjct: 1044 DLTGGIEVMFFPHTYSSY--GADIID-DAVVLVNAKVVVRDDRIALIANQLVVPDFSNVQ 1100

Query: 315  ATSLQAVKLLALYLTGDKEGAISSLKEWLSDSAIGSNPVLRLIDG 449
                 AV LL    T DK   +++LK+ L+     S   LRLI G
Sbjct: 1101 EDRPLAVSLLTRQCTFDK---VNALKQVLARHPGTSQVHLRLISG 1142


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,805,611
Number of Sequences: 219361
Number of extensions: 964837
Number of successful extensions: 2955
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2941
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)