ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart45g06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC136842.2| Oryza sativa (japonica cultivar-group) chromosome... 115 5e-23
2gb|AC118347.2| Oryza sativa (japonica cultivar-group) chromosome... 115 5e-23
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 115 5e-23
4dbj|AK100744.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 5e-23
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 115 5e-23
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 52 7e-04
7dbj|AP005004.3| Oryza sativa (japonica cultivar-group) genomic D... 52 7e-04
8dbj|AK105563.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 7e-04
9gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 46 0.040
10dbj|AP005613.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.040
11gb|CP000316.1| Polaromonas sp. JS666, complete genome 44 0.16
12gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 44 0.16
13gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 40 2.5
14gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 2.5
15ref|XM_655550.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 2.5
16gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 2.5
17emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 40 2.5
18emb|BX640427.1| Bordetella parapertussis strain 12822, complete ... 40 2.5
19emb|BX640417.1| Bordetella pertussis strain Tohama I, complete g... 40 2.5
20gb|CP000249.1| Frankia sp. CcI3, complete genome 40 2.5
21dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.5
22gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 2.5
23gb|AE004855.1| Pseudomonas aeruginosa PAO1, section 416 of 529 o... 40 2.5
24ref|XM_223412.3| PREDICTED: Rattus norvegicus similar to WD repe... 40 2.5
25gb|AC169379.4| Sorghum bicolor clone SB_BBc0088B22, complete seq... 40 2.5
26dbj|AP002093.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.5
27gb|AY104453.1| Zea mays PCO071460 mRNA sequence 40 2.5
28gb|AF082985.1|AF082985 Pseudomonas aeruginosa permease for AmpC ... 40 2.5
29gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 2.5
30ref|XM_600341.2| PREDICTED: Bos taurus similar to small optic lo... 38 9.8
31ref|XM_881204.1| PREDICTED: Bos taurus similar to dual-specifici... 38 9.8
32gb|AY659035.1| Synthetic construct Peudomonas aeruginosa clone F... 38 9.8
33gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, com... 38 9.8
34gb|AC134826.4| Mus musculus BAC clone RP24-459P6 from chromosome... 38 9.8
35gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 38 9.8
36ref|XM_754040.1| Ustilago maydis 521 hypothetical protein (UM029... 38 9.8
37ref|XM_540402.2| PREDICTED: Canis familiaris similar to sidekick... 38 9.8
38emb|Z86099.2|HSV2HG52 Herpes simplex virus type 2 (strain HG52),... 38 9.8
39gb|DQ397836.1| Cenarchaeum symbiosum clone C02H06, complete sequ... 38 9.8
40gb|DQ397834.1| Cenarchaeum symbiosum clone C02E12, complete sequ... 38 9.8
41gb|AC000385.2| Homo sapiens chromosome 11 clone PAC pDJ392a17, c... 38 9.8
42gb|CP000264.1| Jannaschia sp. CCS1, complete genome 38 9.8
43dbj|AK171747.1| Mus musculus activated spleen cDNA, RIKEN full-l... 38 9.8
44dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.8
45gb|AC068587.16| Homo sapiens chromosome 8, clone RP11-303G3, com... 38 9.8
46dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic D... 38 9.8
47dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 38 9.8
48gb|AE004730.1| Pseudomonas aeruginosa PAO1, section 291 of 529 o... 38 9.8
49gb|AE004653.1| Pseudomonas aeruginosa PAO1, section 214 of 529 o... 38 9.8
50dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 38 9.8
51dbj|AP004688.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.8
52gb|AY111509.1| Zea mays CL11315_1 mRNA sequence 38 9.8
53gb|AF058302.1|AF058302 Streptomyces roseofulvus frenolicin biosy... 38 9.8
54gb|AC129597.5| Mus musculus BAC clone RP23-262I17 from 13, compl... 38 9.8 
>gb|AC136842.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0085C16, complete sequence
          Length = 156069

 Score =  115 bits (58), Expect = 5e-23
 Identities = 79/86 (91%)
 Strand = Plus / Minus

                                                                          
Query: 101    gcacgtggcgatgctgacgacgcccgggatgggccacctgatcccgctggccgagctggc 160
              ||||||||||||||||  |||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 111794 gcacgtggcgatgctggtgacgccggggatggggcacctgatcccgctggccgagctggc 111735

                                        
Query: 161    gaagcgcctggccgcgcggcacggcg 186
              |||||| ||||| ||| |||||||||
Sbjct: 111734 gaagcggctggcggcgaggcacggcg 111709
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>gb|AC118347.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0043E10, complete sequence
          Length = 124591

 Score =  115 bits (58), Expect = 5e-23
 Identities = 79/86 (91%)
 Strand = Plus / Plus

                                                                          
Query: 101    gcacgtggcgatgctgacgacgcccgggatgggccacctgatcccgctggccgagctggc 160
              ||||||||||||||||  |||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 120869 gcacgtggcgatgctggtgacgccggggatggggcacctgatcccgctggccgagctggc 120928

                                        
Query: 161    gaagcgcctggccgcgcggcacggcg 186
              |||||| ||||| ||| |||||||||
Sbjct: 120929 gaagcggctggcggcgaggcacggcg 120954
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  115 bits (58), Expect = 5e-23
 Identities = 79/86 (91%)
 Strand = Plus / Minus

                                                                            
Query: 101      gcacgtggcgatgctgacgacgcccgggatgggccacctgatcccgctggccgagctggc 160
                ||||||||||||||||  |||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 22073798 gcacgtggcgatgctggtgacgccggggatggggcacctgatcccgctggccgagctggc 22073739

                                          
Query: 161      gaagcgcctggccgcgcggcacggcg 186
                |||||| ||||| ||| |||||||||
Sbjct: 22073738 gaagcggctggcggcgaggcacggcg 22073713
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>dbj|AK100744.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118G04, full
           insert sequence
          Length = 1862

 Score =  115 bits (58), Expect = 5e-23
 Identities = 79/86 (91%)
 Strand = Plus / Plus

                                                                       
Query: 101 gcacgtggcgatgctgacgacgcccgggatgggccacctgatcccgctggccgagctggc 160
           ||||||||||||||||  |||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 204 gcacgtggcgatgctggtgacgccggggatggggcacctgatcccgctggccgagctggc 263

                                     
Query: 161 gaagcgcctggccgcgcggcacggcg 186
           |||||| ||||| ||| |||||||||
Sbjct: 264 gaagcggctggcggcgaggcacggcg 289
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  115 bits (58), Expect = 5e-23
 Identities = 79/86 (91%)
 Strand = Plus / Minus

                                                                            
Query: 101      gcacgtggcgatgctgacgacgcccgggatgggccacctgatcccgctggccgagctggc 160
                ||||||||||||||||  |||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 22383709 gcacgtggcgatgctggtgacgccggggatggggcacctgatcccgctggccgagctggc 22383650

                                          
Query: 161      gaagcgcctggccgcgcggcacggcg 186
                |||||| ||||| ||| |||||||||
Sbjct: 22383649 gaagcggctggcggcgaggcacggcg 22383624
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                             
Query: 132     ggccacctgatcccgctggccgagctggcg 161
               |||||||| |||||||||||||||||||||
Sbjct: 8092795 ggccacctcatcccgctggccgagctggcg 8092766



 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                             
Query: 132     ggccacctgatcccgctggccgagctggcg 161
               |||||||| |||||||||||||||||||||
Sbjct: 8076485 ggccacctcatcccgctggccgagctggcg 8076456



 Score = 46.1 bits (23), Expect = 0.040
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                              
Query: 132     ggccacctgatcccgctggccgagctggcga 162
               |||||||| ||||||||||||||| ||||||
Sbjct: 8034468 ggccacctcatcccgctggccgagttggcga 8034438



 Score = 44.1 bits (22), Expect = 0.16
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 132     ggccacctgatcccgctggccgagctggcg 161
               |||||||| |||||| ||||||||||||||
Sbjct: 8018642 ggccacctcatcccgatggccgagctggcg 8018613
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>dbj|AP005004.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0503B05
          Length = 156814

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                           
Query: 132   ggccacctgatcccgctggccgagctggcg 161
             |||||||| |||||||||||||||||||||
Sbjct: 80988 ggccacctcatcccgctggccgagctggcg 80959



 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                           
Query: 132   ggccacctgatcccgctggccgagctggcg 161
             |||||||| |||||||||||||||||||||
Sbjct: 64678 ggccacctcatcccgctggccgagctggcg 64649



 Score = 46.1 bits (23), Expect = 0.040
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 132   ggccacctgatcccgctggccgagctggcga 162
             |||||||| ||||||||||||||| ||||||
Sbjct: 22661 ggccacctcatcccgctggccgagttggcga 22631



 Score = 44.1 bits (22), Expect = 0.16
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 132  ggccacctgatcccgctggccgagctggcg 161
            |||||||| |||||| ||||||||||||||
Sbjct: 6835 ggccacctcatcccgatggccgagctggcg 6806
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>dbj|AK105563.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-B11, full
           insert sequence
          Length = 1694

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 132 ggccacctgatcccgctggccgagctggcg 161
           |||||||| |||||||||||||||||||||
Sbjct: 150 ggccacctcatcccgctggccgagctggcg 179
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>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 46.1 bits (23), Expect = 0.040
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 61      gcggcatctccggcggcacggcg 83
               |||||||||||||||||||||||
Sbjct: 2875563 gcggcatctccggcggcacggcg 2875585
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>dbj|AP005613.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0082C09
          Length = 160665

 Score = 46.1 bits (23), Expect = 0.040
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 132    ggccacctgatcccgctggccgagctggcga 162
              |||||||| ||||||||||||||| ||||||
Sbjct: 157883 ggccacctcatcccgctggccgagttggcga 157853



 Score = 44.1 bits (22), Expect = 0.16
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 132    ggccacctgatcccgctggccgagctggcg 161
              |||||||| |||||| ||||||||||||||
Sbjct: 142057 ggccacctcatcccgatggccgagctggcg 142028
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 164     gcgcctggccgcgcggcacggc 185
               ||||||||||||||||||||||
Sbjct: 4008586 gcgcctggccgcgcggcacggc 4008607



 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 165     cgcctggccgcgcggcacg 183
               |||||||||||||||||||
Sbjct: 2588256 cgcctggccgcgcggcacg 2588274
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 165     cgcctggccgcgcggcacggcg 186
               ||||||||||||||||||||||
Sbjct: 2237193 cgcctggccgcgcggcacggcg 2237172



 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 168     ctggccgcgcggcacggcg 186
               |||||||||||||||||||
Sbjct: 1186368 ctggccgcgcggcacggcg 1186386
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>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 154    agctggcgaagcgcctggcc 173
              ||||||||||||||||||||
Sbjct: 642995 agctggcgaagcgcctggcc 642976



 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 104     cgtggcgatgctgacgacg 122
               |||||||||||||||||||
Sbjct: 1980721 cgtggcgatgctgacgacg 1980739
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 170    ggccgcgcggcacggcgccacggc 193
              ||||||||||||||||| ||||||
Sbjct: 509988 ggccgcgcggcacggcggcacggc 510011
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>ref|XM_655550.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3038.2), mRNA
          Length = 1650

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 170  ggccgcgcggcacggcgccacggccacg 197
            ||||||||||  ||||||||||||||||
Sbjct: 1498 ggccgcgcggaccggcgccacggccacg 1471
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 61      gcggcatctccggcggcacg 80
               ||||||||||||||||||||
Sbjct: 2133090 gcggcatctccggcggcacg 2133071
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>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 167    cctggccgcgcggcacggcgccac 190
              ||||||||||| ||||||||||||
Sbjct: 216565 cctggccgcgctgcacggcgccac 216542
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>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14
          Length = 348997

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 167    cctggccgcgcggcacggcgccac 190
              ||||||||||| ||||||||||||
Sbjct: 129079 cctggccgcgctgcacggcgccac 129056
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>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12
          Length = 348934

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 167    cctggccgcgcggcacggcgccac 190
              ||||||||||| ||||||||||||
Sbjct: 149162 cctggccgcgctgcacggcgccac 149185
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 166     gcctggccgcgcggcacggc 185
               ||||||||||||||||||||
Sbjct: 1582156 gcctggccgcgcggcacggc 1582175



 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 165     cgcctggccgcgcggcacg 183
               |||||||||||||||||||
Sbjct: 3326532 cgcctggccgcgcggcacg 3326514
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 179     gcacggcgccacggccacgc 198
               ||||||||||||||||||||
Sbjct: 5971624 gcacggcgccacggccacgc 5971605



 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 83       ggaggccggccggccaccg 101
                |||||||||||||||||||
Sbjct: 31687736 ggaggccggccggccaccg 31687754
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 167     cctggccgcgcggcacggcgccacggcc 194
               ||||||||||| || |||||||||||||
Sbjct: 2489638 cctggccgcgctgctcggcgccacggcc 2489611
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>gb|AE004855.1| Pseudomonas aeruginosa PAO1, section 416 of 529 of the complete
            genome
          Length = 11578

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 164  gcgcctggccgcgcggcacg 183
            ||||||||||||||||||||
Sbjct: 2514 gcgcctggccgcgcggcacg 2533
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>ref|XM_223412.3| PREDICTED: Rattus norvegicus similar to WD repeat membrane protein
            (predicted) (LOC305349), mRNA
          Length = 4367

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 154  agctggcgaagcgcctggcc 173
            ||||||||||||||||||||
Sbjct: 2332 agctggcgaagcgcctggcc 2351
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>gb|AC169379.4| Sorghum bicolor clone SB_BBc0088B22, complete sequence
          Length = 105215

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    cggcggaggccggccggcca 98
             ||||||||||||||||||||
Sbjct: 95035 cggcggaggccggccggcca 95054
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>dbj|AP002093.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0466B10
          Length = 151806

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   gcacggcgccacggccacgc 198
             ||||||||||||||||||||
Sbjct: 39512 gcacggcgccacggccacgc 39493
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>gb|AY104453.1| Zea mays PCO071460 mRNA sequence
          Length = 1528

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 47 agcaatggaggcgagcggca 66
          ||||||||||||||||||||
Sbjct: 29 agcaatggaggcgagcggca 48
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>gb|AF082985.1|AF082985 Pseudomonas aeruginosa permease for AmpC beta-lactamase expression
            AmpG (ampG) gene, complete cds; and unknown gene
          Length = 2960

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 164  gcgcctggccgcgcggcacg 183
            ||||||||||||||||||||
Sbjct: 1605 gcgcctggccgcgcggcacg 1624
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 140     gatcccgctggccgagctgg 159
               ||||||||||||||||||||
Sbjct: 1980622 gatcccgctggccgagctgg 1980603



 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 170     ggccgcgcggcacggcgccacgg 192
               ||||| |||||||||||||||||
Sbjct: 4776803 ggccgggcggcacggcgccacgg 4776781
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>ref|XM_600341.2| PREDICTED: Bos taurus similar to small optic lobes (LOC522068), mRNA
          Length = 3204

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 143  cccgctggccgagctggcgaagc 165
            ||||||||||||||||| |||||
Sbjct: 2562 cccgctggccgagctggggaagc 2540
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>ref|XM_881204.1| PREDICTED: Bos taurus similar to dual-specificity
            tyrosine-(Y)-phosphorylation regulated kinase 1B isoform
            c, transcript variant 5 (LOC507571), mRNA
          Length = 2512

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 142  tcccgctggccgagctggc 160
            |||||||||||||||||||
Sbjct: 1075 tcccgctggccgagctggc 1057
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>gb|AY659035.1| Synthetic construct Peudomonas aeruginosa clone FLH035779.01F
           PA2276 gene, partial cds
          Length = 891

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 87  gccggccggccaccgcacg 105
           |||||||||||||||||||
Sbjct: 562 gccggccggccaccgcacg 544
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>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence
          Length = 574126

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 141  atcccgctggccgagctgg 159
            |||||||||||||||||||
Sbjct: 5839 atcccgctggccgagctgg 5821
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>gb|AC134826.4| Mus musculus BAC clone RP24-459P6 from chromosome 13, complete sequence
          Length = 168202

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 79    cggcggaggccggccggcc 97
             |||||||||||||||||||
Sbjct: 18546 cggcggaggccggccggcc 18564
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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 145     cgctggccgagctggcgaa 163
               |||||||||||||||||||
Sbjct: 2738517 cgctggccgagctggcgaa 2738535
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>ref|XM_754040.1| Ustilago maydis 521 hypothetical protein (UM02986.1) partial mRNA
          Length = 870

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 26  atacgcagcgcagcgcagg 44
           |||||||||||||||||||
Sbjct: 552 atacgcagcgcagcgcagg 534
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>ref|XM_540402.2| PREDICTED: Canis familiaris similar to sidekick 2 (LOC483283), mRNA
          Length = 6693

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 180  cacggcgccacggccacgc 198
            |||||||||||||||||||
Sbjct: 5071 cacggcgccacggccacgc 5089
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>emb|Z86099.2|HSV2HG52 Herpes simplex virus type 2 (strain HG52), complete genome
          Length = 154746

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 149   ggccgagctggcgaagcgc 167
             |||||||||||||||||||
Sbjct: 81714 ggccgagctggcgaagcgc 81732
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>gb|DQ397836.1| Cenarchaeum symbiosum clone C02H06, complete sequence
          Length = 39848

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 164   gcgcctggccgcgcggcac 182
             |||||||||||||||||||
Sbjct: 31091 gcgcctggccgcgcggcac 31073
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>gb|DQ397834.1| Cenarchaeum symbiosum clone C02E12, complete sequence
          Length = 39848

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 164  gcgcctggccgcgcggcac 182
            |||||||||||||||||||
Sbjct: 8758 gcgcctggccgcgcggcac 8776
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>gb|AC000385.2| Homo sapiens chromosome 11 clone PAC pDJ392a17, complete sequence
          Length = 164155

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 59     gagcggcatctccggcggcacgg 81
              |||||||| ||||||||||||||
Sbjct: 100969 gagcggcaactccggcggcacgg 100947
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 179     gcacggcgccacggccacg 197
               |||||||||||||||||||
Sbjct: 1328117 gcacggcgccacggccacg 1328099
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>dbj|AK171747.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
           library, clone:F830008I19 product:guanosine diphosphate
           (GDP) dissociation inhibitor 3, full insert sequence
          Length = 4402

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 79  cggcggaggccggccggcc 97
           |||||||||||||||||||
Sbjct: 263 cggcggaggccggccggcc 245
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 175      cgcggcacggcgccacggccacg 197
                |||||||||||||| ||||||||
Sbjct: 17219821 cgcggcacggcgccgcggccacg 17219843
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>gb|AC068587.16| Homo sapiens chromosome 8, clone RP11-303G3, complete sequence
          Length = 174171

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 59     gagcggcatctccggcggcacgg 81
              |||||||| ||||||||||||||
Sbjct: 123404 gagcggcaactccggcggcacgg 123382
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>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0503C12
          Length = 147180

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 83     ggaggccggccggccaccg 101
              |||||||||||||||||||
Sbjct: 101468 ggaggccggccggccaccg 101486
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 158     ggcgaagcgcctggccgcgcggc 180
               ||||||||| |||||||||||||
Sbjct: 6464740 ggcgaagcggctggccgcgcggc 6464762
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>gb|AE004730.1| Pseudomonas aeruginosa PAO1, section 291 of 529 of the complete genome
          Length = 20021

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 151   ccgagctggcgaagcgcctggcc 173
             |||||| ||||||||||||||||
Sbjct: 16299 ccgagccggcgaagcgcctggcc 16277
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>gb|AE004653.1| Pseudomonas aeruginosa PAO1, section 214 of 529 of the complete
            genome
          Length = 10126

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 87   gccggccggccaccgcacg 105
            |||||||||||||||||||
Sbjct: 5825 gccggccggccaccgcacg 5807
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 79      cggcggaggccggccggcc 97
               |||||||||||||||||||
Sbjct: 5884662 cggcggaggccggccggcc 5884644



 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 135     cacctgatcccgctggccg 153
               |||||||||||||||||||
Sbjct: 3353780 cacctgatcccgctggccg 3353762
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>dbj|AP004688.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0036C11
          Length = 137995

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 175   cgcggcacggcgccacggccacg 197
             |||||||||||||| ||||||||
Sbjct: 68548 cgcggcacggcgccgcggccacg 68570
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>gb|AY111509.1| Zea mays CL11315_1 mRNA sequence
          Length = 632

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 107 ggcgatgctgacgacgccc 125
           |||||||||||||||||||
Sbjct: 561 ggcgatgctgacgacgccc 579
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>gb|AF058302.1|AF058302 Streptomyces roseofulvus frenolicin biosynthetic gene cluster, complete
             sequence
          Length = 25306

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 176   gcggcacggcgccacggcc 194
             |||||||||||||||||||
Sbjct: 20581 gcggcacggcgccacggcc 20599
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>gb|AC129597.5| Mus musculus BAC clone RP23-262I17 from 13, complete sequence
          Length = 195537

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 79     cggcggaggccggccggcc 97
              |||||||||||||||||||
Sbjct: 178839 cggcggaggccggccggcc 178857


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,046,747
Number of Sequences: 3902068
Number of extensions: 1046747
Number of successful extensions: 87375
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84016
Number of HSP's gapped (non-prelim): 3359
length of query: 198
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 176
effective length of database: 17,147,199,772
effective search space: 3017907159872
effective search space used: 3017907159872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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