ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart45g05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_188014.1| Oryza sativa (japonica cultivar-group), Ozsa843... 109 8e-21
2dbj|AK101084.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 8e-21
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
4dbj|AP001080.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
5dbj|AP000969.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
6gb|AC118289.2| Oryza sativa (japonica cultivar-group) chromosome... 72 2e-09
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
8dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 62 2e-06
9emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete ... 56 1e-04
10ref|NM_190711.1| Oryza sativa (japonica cultivar-group), predic... 42 1.6
11gb|BT017614.1| Zea mays clone EL01N0433D01.c mRNA sequence 42 1.6
12ref|XM_588802.2| PREDICTED: Bos taurus similar to oligodendrocyt... 42 1.6
13emb|AL133325.20| Human DNA sequence from clone RP5-984P4 on chro... 42 1.6
14emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.6
15emb|BX640422.1| Bordetella pertussis strain Tohama I, complete g... 42 1.6
16emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete ... 42 1.6
17dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
18dbj|AP003287.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
19gb|AY105457.1| Zea mays PCO149506 mRNA sequence 42 1.6
20gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 42 1.6
21gb|L10720.1|BPETOXOP Bordetella pertussis toxin liberation operon 42 1.6
22ref|XM_483662.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.2
23ref|XM_469762.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.2
24ref|XM_469760.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.2
25ref|XM_463717.1| Oryza sativa (japonica cultivar-group), predic... 40 6.2
26ref|XM_418084.1| PREDICTED: Gallus gallus similar to microtubule... 40 6.2
27gb|BC068049.1| Homo sapiens cDNA clone IMAGE:6340956, partial cds 40 6.2
28gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.2
29gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 genom... 40 6.2
30gb|AY459336.1| Oryza sativa (japonica cultivar-group) clone CL03... 40 6.2
31emb|AL137247.14| Human DNA sequence from clone RP11-298P3 on chr... 40 6.2
32emb|Z86099.2|HSV2HG52 Herpes simplex virus type 2 (strain HG52),... 40 6.2
33gb|BC022188.2| Homo sapiens hypothetical gene CG018, mRNA (cDNA ... 40 6.2
34emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete ... 40 6.2
35emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete ... 40 6.2
36emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete ... 40 6.2
37gb|AE011704.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 6.2
38gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genom... 40 6.2
39gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 6.2
40gb|AF113009.1|AF113009 Homo sapiens PRO0297 mRNA, complete cds 40 6.2
41gb|DQ026301.1| Zea mays pyrroline 5-carboxylate reductase (p5cr)... 40 6.2
42dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
43dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
44dbj|AP003259.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
45dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 6.2
46dbj|AP003912.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
47dbj|AP006265.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
48dbj|AK070184.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
49gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 40 6.2
50dbj|AK061252.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
51gb|AC166753.3| Cavia porcellus, clone Cavia porcellus-25199257D4... 40 6.2 
>ref|NM_188014.1| Oryza sativa (japonica cultivar-group), Ozsa8434 predicted mRNA
          Length = 930

 Score =  109 bits (55), Expect = 8e-21
 Identities = 102/117 (87%), Gaps = 3/117 (2%)
 Strand = Plus / Plus

                                                                       
Query: 273 gccgacgccgccacgccgcggttccacctccgctggttcacccccgtcacggaggtcgcg 332
           ||||||||||||   |||||||||| |||||||||||||||||||||| | |||||    
Sbjct: 205 gccgacgccgcc---ccgcggttccgcctccgctggttcacccccgtcgccgaggtgaat 261

                                                                    
Query: 333 ctctgcgggcacgcgacgctggccaccgcccacttcctcttcacgtccgtcctcgcg 389
           |||||||| ||||||||||||||  |||||||||||||||||||  |||||||||||
Sbjct: 262 ctctgcggccacgcgacgctggcatccgcccacttcctcttcaccaccgtcctcgcg 318



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 124/149 (83%)
 Strand = Plus / Plus

                                                                       
Query: 93  atccagtatgtcgtggtggatgccttcacggcccagccgttcaagggcaacccggccgcg 152
           |||||||| | ||||||||| || ||| ||||| ||||||||||||||||||| ||||| 
Sbjct: 16  atccagtacgccgtggtggacgcgttcgcggccgagccgttcaagggcaaccccgccgcc 75

                                                                       
Query: 153 gtatgcttcctggtggacgacgcggccgcccccgcgggggacggacggtggatgcagtcc 212
           |||||| ||||||  |  || |  |||||  | |||| |||||  |||||||||||||||
Sbjct: 76  gtatgcctcctggaaggggaggatgccgcggcggcggcggacgagcggtggatgcagtcc 135

                                        
Query: 213 gtcgccgtcgagttcaacctctcccagac 241
           ||||| | |||||||||||||||| ||||
Sbjct: 136 gtcgcagccgagttcaacctctccgagac 164



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                               
Query: 403 tggtcgagttcgccaccaagtccggcgtcctgaccgccaagaaggttcctgc 454
           ||||||||||||  || | ||||||| |||||||||||||||||||||||||
Sbjct: 344 tggtcgagttcgtgacgaggtccggcatcctgaccgccaagaaggttcctgc 395
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>dbj|AK101084.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024I08, full
           insert sequence
          Length = 1161

 Score =  109 bits (55), Expect = 8e-21
 Identities = 102/117 (87%), Gaps = 3/117 (2%)
 Strand = Plus / Plus

                                                                       
Query: 273 gccgacgccgccacgccgcggttccacctccgctggttcacccccgtcacggaggtcgcg 332
           ||||||||||||   |||||||||| |||||||||||||||||||||| | |||||    
Sbjct: 287 gccgacgccgcc---ccgcggttccgcctccgctggttcacccccgtcgccgaggtgaat 343

                                                                    
Query: 333 ctctgcgggcacgcgacgctggccaccgcccacttcctcttcacgtccgtcctcgcg 389
           |||||||| ||||||||||||||  |||||||||||||||||||  |||||||||||
Sbjct: 344 ctctgcggccacgcgacgctggcatccgcccacttcctcttcaccaccgtcctcgcg 400



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 124/149 (83%)
 Strand = Plus / Plus

                                                                       
Query: 93  atccagtatgtcgtggtggatgccttcacggcccagccgttcaagggcaacccggccgcg 152
           |||||||| | ||||||||| || ||| ||||| ||||||||||||||||||| ||||| 
Sbjct: 98  atccagtacgccgtggtggacgcgttcgcggccgagccgttcaagggcaaccccgccgcc 157

                                                                       
Query: 153 gtatgcttcctggtggacgacgcggccgcccccgcgggggacggacggtggatgcagtcc 212
           |||||| ||||||  |  || |  |||||  | |||| |||||  |||||||||||||||
Sbjct: 158 gtatgcctcctggaaggggaggatgccgcggcggcggcggacgagcggtggatgcagtcc 217

                                        
Query: 213 gtcgccgtcgagttcaacctctcccagac 241
           ||||| | |||||||||||||||| ||||
Sbjct: 218 gtcgcagccgagttcaacctctccgagac 246



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                               
Query: 403 tggtcgagttcgccaccaagtccggcgtcctgaccgccaagaaggttcctgc 454
           ||||||||||||  || | ||||||| |||||||||||||||||||||||||
Sbjct: 426 tggtcgagttcgtgacgaggtccggcatcctgaccgccaagaaggttcctgc 477
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 112/135 (82%)
 Strand = Plus / Minus

                                                                           
Query: 107     ggtggatgccttcacggcccagccgttcaagggcaacccggccgcggtatgcttcctggt 166
               |||||| || ||| ||||| ||||||||||||||||||| ||||| |||||| |||||| 
Sbjct: 9116217 ggtggacgcgttcgcggccgagccgttcaagggcaaccccgccgccgtatgcctcctgga 9116158

                                                                           
Query: 167     ggacgacgcggccgcccccgcgggggacggacggtggatgcagtccgtcgccgtcgagtt 226
                |  || |  |||||  | |||| |||||  |||||||||||||||||||| | ||||||
Sbjct: 9116157 aggggaggatgccgcggcggcggcggacgagcggtggatgcagtccgtcgcagccgagtt 9116098

                              
Query: 227     caacctctcccagac 241
               |||||||||| ||||
Sbjct: 9116097 caacctctccgagac 9116083



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                        
Query: 333     ctctgcgggcacgcgacgctggccaccgcccacttcctcttcacgtccgtcctcgcg 389
               |||||||| ||||||||||||||  |||||||||||||||||||  |||||||||||
Sbjct: 9115898 ctctgcggccacgcgacgctggcatccgcccacttcctcttcaccaccgtcctcgcg 9115842



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 53/59 (89%), Gaps = 3/59 (5%)
 Strand = Plus / Minus

                                                                          
Query: 273     gccgacgccgccacgccgcggttccacctccgctggttcacccccgtcacggaggtcgc 331
               ||||||||||||   |||||||||| |||||||||||||||||||||| | ||||||||
Sbjct: 9116042 gccgacgccgcc---ccgcggttccgcctccgctggttcacccccgtcgccgaggtcgc 9115987



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                   
Query: 403     tggtcgagttcgccaccaagtccggcgtcctgaccgccaagaaggttcctgc 454
               ||||||||||||  || | ||||||| |||||||||||||||||||||||||
Sbjct: 9115816 tggtcgagttcgtgacgaggtccggcatcctgaccgccaagaaggttcctgc 9115765



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 268      gcgcggccgacgccgccacgccgcg 292
                |||||| ||||||||||||||||||
Sbjct: 37295056 gcgcgggcgacgccgccacgccgcg 37295080



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 274      ccgacgccgccacgccgcgg 293
                ||||||||||||||||||||
Sbjct: 41713293 ccgacgccgccacgccgcgg 41713312
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>dbj|AP001080.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0499C11
          Length = 151369

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 112/135 (82%)
 Strand = Plus / Minus

                                                                          
Query: 107    ggtggatgccttcacggcccagccgttcaagggcaacccggccgcggtatgcttcctggt 166
              |||||| || ||| ||||| ||||||||||||||||||| ||||| |||||| |||||| 
Sbjct: 145224 ggtggacgcgttcgcggccgagccgttcaagggcaaccccgccgccgtatgcctcctgga 145165

                                                                          
Query: 167    ggacgacgcggccgcccccgcgggggacggacggtggatgcagtccgtcgccgtcgagtt 226
               |  || |  |||||  | |||| |||||  |||||||||||||||||||| | ||||||
Sbjct: 145164 aggggaggatgccgcggcggcggcggacgagcggtggatgcagtccgtcgcagccgagtt 145105

                             
Query: 227    caacctctcccagac 241
              |||||||||| ||||
Sbjct: 145104 caacctctccgagac 145090



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                       
Query: 333    ctctgcgggcacgcgacgctggccaccgcccacttcctcttcacgtccgtcctcgcg 389
              |||||||| ||||||||||||||  |||||||||||||||||||  |||||||||||
Sbjct: 144905 ctctgcggccacgcgacgctggcatccgcccacttcctcttcaccaccgtcctcgcg 144849



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 53/59 (89%), Gaps = 3/59 (5%)
 Strand = Plus / Minus

                                                                         
Query: 273    gccgacgccgccacgccgcggttccacctccgctggttcacccccgtcacggaggtcgc 331
              ||||||||||||   |||||||||| |||||||||||||||||||||| | ||||||||
Sbjct: 145049 gccgacgccgcc---ccgcggttccgcctccgctggttcacccccgtcgccgaggtcgc 144994



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                  
Query: 403    tggtcgagttcgccaccaagtccggcgtcctgaccgccaagaaggttcctgc 454
              ||||||||||||  || | ||||||| |||||||||||||||||||||||||
Sbjct: 144823 tggtcgagttcgtgacgaggtccggcatcctgaccgccaagaaggttcctgc 144772
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>dbj|AP000969.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0011D01
          Length = 168655

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 112/135 (82%)
 Strand = Plus / Minus

                                                                         
Query: 107   ggtggatgccttcacggcccagccgttcaagggcaacccggccgcggtatgcttcctggt 166
             |||||| || ||| ||||| ||||||||||||||||||| ||||| |||||| |||||| 
Sbjct: 16599 ggtggacgcgttcgcggccgagccgttcaagggcaaccccgccgccgtatgcctcctgga 16540

                                                                         
Query: 167   ggacgacgcggccgcccccgcgggggacggacggtggatgcagtccgtcgccgtcgagtt 226
              |  || |  |||||  | |||| |||||  |||||||||||||||||||| | ||||||
Sbjct: 16539 aggggaggatgccgcggcggcggcggacgagcggtggatgcagtccgtcgcagccgagtt 16480

                            
Query: 227   caacctctcccagac 241
             |||||||||| ||||
Sbjct: 16479 caacctctccgagac 16465



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                      
Query: 333   ctctgcgggcacgcgacgctggccaccgcccacttcctcttcacgtccgtcctcgcg 389
             |||||||| ||||||||||||||  |||||||||||||||||||  |||||||||||
Sbjct: 16280 ctctgcggccacgcgacgctggcatccgcccacttcctcttcaccaccgtcctcgcg 16224



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 53/59 (89%), Gaps = 3/59 (5%)
 Strand = Plus / Minus

                                                                        
Query: 273   gccgacgccgccacgccgcggttccacctccgctggttcacccccgtcacggaggtcgc 331
             ||||||||||||   |||||||||| |||||||||||||||||||||| | ||||||||
Sbjct: 16424 gccgacgccgcc---ccgcggttccgcctccgctggttcacccccgtcgccgaggtcgc 16369



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                 
Query: 403   tggtcgagttcgccaccaagtccggcgtcctgaccgccaagaaggttcctgc 454
             ||||||||||||  || | ||||||| |||||||||||||||||||||||||
Sbjct: 16198 tggtcgagttcgtgacgaggtccggcatcctgaccgccaagaaggttcctgc 16147
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>gb|AC118289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0099O15, complete sequence
          Length = 137357

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                 
Query: 403   tggtcgagttcgccaccaagtccggcgtcctgaccgccaagaaggttcctgc 454
             ||||||||||||  |||| ||||||| |||||||||||||||||||||||||
Sbjct: 43980 tggtcgagttcgtgaccaggtccggcatcctgaccgccaagaaggttcctgc 44031



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                  
Query: 333   ctctgcgggcacgcgacgctggccaccgcccacttcctcttcacgtccgtcct 385
             |||||||| ||||||||||||||  |||||||||||||||||||  |||||||
Sbjct: 43904 ctctgcggccacgcgacgctggcatccgcccacttcctcttcaccaccgtcct 43956



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 299   cctccgctggttcacccccg 318
             ||||||||||||||||||||
Sbjct: 43791 cctccgctggttcacccccg 43810
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                    
Query: 403      tggtcgagttcgccaccaagtccggcgtcctgaccgccaagaaggttcctgc 454
                ||||||||||||  |||| ||||||| |||||||||||||||||||||||||
Sbjct: 23653975 tggtcgagttcgtgaccaggtccggcatcctgaccgccaagaaggttcctgc 23654026



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                     
Query: 333      ctctgcgggcacgcgacgctggccaccgcccacttcctcttcacgtccgtcct 385
                |||||||| ||||||||||||||  |||||||||||||||||||  |||||||
Sbjct: 23653899 ctctgcggccacgcgacgctggcatccgcccacttcctcttcaccaccgtcct 23653951



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 299      cctccgctggttcacccccg 318
                ||||||||||||||||||||
Sbjct: 23653786 cctccgctggttcacccccg 23653805
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                          
Query: 303     cgctggttcacccccgtcacggaggtcgcgctctgcgggcacgcgacgctggccaccgc 361
               ||||||||||| |||| ||| ||||||||| | ||||| |||||||| |||||||||||
Sbjct: 8354997 cgctggttcacgcccgccaccgaggtcgcgatgtgcggtcacgcgaccctggccaccgc 8354939
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>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29
          Length = 339650

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                          
Query: 303    cgctggttcacccccgtcacggaggtcgcgctctgcgggcacgcgacgctggccaccgcc 362
              ||||||||||| || | ||| ||||||||| | ||||| ||||| ||||| |||||||||
Sbjct: 245733 cgctggttcactccggccaccgaggtcgcgatgtgcggccacgccacgctcgccaccgcc 245792

                      
Query: 363    cacttcct 370
              ||| ||||
Sbjct: 245793 cacgtcct 245800
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>ref|NM_190711.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 636

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 268 gcgcggccgacgccgccacgccgcg 292
           |||||| ||||||||||||||||||
Sbjct: 334 gcgcgggcgacgccgccacgccgcg 310
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>gb|BT017614.1| Zea mays clone EL01N0433D01.c mRNA sequence
          Length = 1229

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 405 gtcgagttcgccaccaagtcc 425
           |||||||||||||||||||||
Sbjct: 381 gtcgagttcgccaccaagtcc 401
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>ref|XM_588802.2| PREDICTED: Bos taurus similar to oligodendrocyte lineage
           transcription factor 2 (LOC539695), mRNA
          Length = 1077

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 158 cttcctggtggacgacgcggccgcc 182
           |||| ||||||||||||||||||||
Sbjct: 297 cttcttggtggacgacgcggccgcc 273
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>emb|AL133325.20| Human DNA sequence from clone RP5-984P4 on chromosome 20 Contains the
              NKX2-2 gene for NK2 transcription factor related locus 2
              (Drosophila), a hydroxysteroid (17-beta) dehydrogenase 12
              (HSD17B12) pseudogene, the GSTM3P gene for glutathione
              S-transferase M3 pseudogene, a novel gene and two CpG
              islands, complete sequence
          Length = 160013

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 265    cccgcgcggccgacgccgcca 285
              |||||||||||||||||||||
Sbjct: 101607 cccgcgcggccgacgccgcca 101627
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>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16
          Length = 343473

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 341    gcacgcgacgctggccaccgc 361
              |||||||||||||||||||||
Sbjct: 332059 gcacgcgacgctggccaccgc 332079
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>emb|BX640422.1| Bordetella pertussis strain Tohama I, complete genome; segment 12/12
          Length = 257701

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 341    gcacgcgacgctggccaccgc 361
              |||||||||||||||||||||
Sbjct: 165237 gcacgcgacgctggccaccgc 165257
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>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29
          Length = 292200

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 344    cgcgacgctggccaccgcccacttc 368
              |||| ||||||||||||||||||||
Sbjct: 291166 cgcgtcgctggccaccgcccacttc 291142
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>dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0423B08
          Length = 151490

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 268  gcgcggccgacgccgccacgccgcg 292
            |||||| ||||||||||||||||||
Sbjct: 7090 gcgcgggcgacgccgccacgccgcg 7114
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>dbj|AP003287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0679C12
          Length = 153666

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 268    gcgcggccgacgccgccacgccgcg 292
              |||||| ||||||||||||||||||
Sbjct: 132045 gcgcgggcgacgccgccacgccgcg 132069
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>gb|AY105457.1| Zea mays PCO149506 mRNA sequence
          Length = 1074

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 405 gtcgagttcgccaccaagtcc 425
           |||||||||||||||||||||
Sbjct: 295 gtcgagttcgccaccaagtcc 315
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                                
Query: 324     gaggtcgcgctctgcgggcacgcgacgctggccaccgcccacttcctct 372
               ||||| || |||||||| ||||||||||| |||| ||| ||| ||||||
Sbjct: 2962041 gaggtggccctctgcggacacgcgacgctcgccagcgcacacgtcctct 2962089
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>gb|L10720.1|BPETOXOP Bordetella pertussis toxin liberation operon
          Length = 9342

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 341  gcacgcgacgctggccaccgc 361
            |||||||||||||||||||||
Sbjct: 2291 gcacgcgacgctggccaccgc 2311
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>ref|XM_483662.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1173

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 273 gccgacgccgccacgccgcg 292
           ||||||||||||||||||||
Sbjct: 361 gccgacgccgccacgccgcg 380
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>ref|XM_469762.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1051

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 338 cgggcacgcgacgctggccaccgc 361
           |||||||||||||| |||||||||
Sbjct: 323 cgggcacgcgacgcaggccaccgc 300
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>ref|XM_469760.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 575

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 338 cgggcacgcgacgctggccaccgc 361
           |||||||||||||| |||||||||
Sbjct: 300 cgggcacgcgacgcaggccaccgc 277
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>ref|XM_463717.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 855

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 ccgacgccgccacgccgcgg 293
           ||||||||||||||||||||
Sbjct: 121 ccgacgccgccacgccgcgg 102
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>ref|XM_418084.1| PREDICTED: Gallus gallus similar to microtubule-associated protein
            tau; Tau microtubule-associated protein (LOC419962), mRNA
          Length = 2282

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 50   tttggagctgctctgctctt 69
            ||||||||||||||||||||
Sbjct: 2242 tttggagctgctctgctctt 2223
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>gb|BC068049.1| Homo sapiens cDNA clone IMAGE:6340956, partial cds
          Length = 1576

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 175 cggccgcccccgcgggggac 194
           ||||||||||||||||||||
Sbjct: 171 cggccgcccccgcgggggac 190
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 338      cgggcacgcgacgctggccaccgc 361
                |||||||||||||| |||||||||
Sbjct: 30607931 cgggcacgcgacgcaggccaccgc 30607908
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>gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 genomic sequence, complete
              sequence
          Length = 157970

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 338    cgggcacgcgacgctggccaccgc 361
              |||||||||||||| |||||||||
Sbjct: 154461 cgggcacgcgacgcaggccaccgc 154484
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>gb|AY459336.1| Oryza sativa (japonica cultivar-group) clone CL034244.2 R2R3-MYB gene
             region
          Length = 65993

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   gccgacgccgccacgccgcg 292
             ||||||||||||||||||||
Sbjct: 28393 gccgacgccgccacgccgcg 28412
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>emb|AL137247.14| Human DNA sequence from clone RP11-298P3 on chromosome 13 Contains the
             3' end of the BRCA2 gene for early onset breast cancer 2,
             the 3' end of a novel gene, part of an ATPase pseudogene
             and a CpG island, complete sequence
          Length = 79506

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   cggccgcccccgcgggggac 194
             ||||||||||||||||||||
Sbjct: 29635 cggccgcccccgcgggggac 29616
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>emb|Z86099.2|HSV2HG52 Herpes simplex virus type 2 (strain HG52), complete genome
          Length = 154746

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   cccgcgcggccgacgccgcc 284
             ||||||||||||||||||||
Sbjct: 38207 cccgcgcggccgacgccgcc 38188
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>gb|BC022188.2| Homo sapiens hypothetical gene CG018, mRNA (cDNA clone
           IMAGE:4813744), complete cds
          Length = 1983

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 175 cggccgcccccgcgggggac 194
           ||||||||||||||||||||
Sbjct: 121 cggccgcccccgcgggggac 140
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>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29
          Length = 293050

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 265    cccgcgcggccgacgccgcc 284
              ||||||||||||||||||||
Sbjct: 167574 cccgcgcggccgacgccgcc 167555
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>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29
          Length = 321250

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 272    ggccgacgccgccacgccgc 291
              ||||||||||||||||||||
Sbjct: 250678 ggccgacgccgccacgccgc 250659
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>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29
          Length = 314100

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 324   gaggtcgcgctctgcgggcacgcgacgctggc 355
             ||||| ||| ||||||||||||||||| ||||
Sbjct: 42446 gaggtggcgttctgcgggcacgcgacggtggc 42477
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>gb|AE011704.1| Xanthomonas axonopodis pv. citri str. 306,  section 82 of 469 of
           the complete genome
          Length = 11626

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 334 tctgcgggcacgcgacgctggcca 357
           ||||||| ||||||||||||||||
Sbjct: 305 tctgcggtcacgcgacgctggcca 328
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>gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genomic sequence, complete
              sequence
          Length = 139872

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 338    cgggcacgcgacgctggccaccgc 361
              |||||||||||||| |||||||||
Sbjct: 139504 cgggcacgcgacgcaggccaccgc 139481
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 114    gccttcacggcccagccgttcaag 137
              |||||||||||||||||| |||||
Sbjct: 748842 gccttcacggcccagccggtcaag 748819
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>gb|AF113009.1|AF113009 Homo sapiens PRO0297 mRNA, complete cds
          Length = 1423

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 175  cggccgcccccgcgggggac 194
            ||||||||||||||||||||
Sbjct: 1421 cggccgcccccgcgggggac 1402
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>gb|DQ026301.1| Zea mays pyrroline 5-carboxylate reductase (p5cr) mRNA, complete
           cds
          Length = 1178

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 ccgacgccgccacgccgcgg 293
           ||||||||||||||||||||
Sbjct: 215 ccgacgccgccacgccgcgg 196
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 273      gccgacgccgccacgccgcg 292
                ||||||||||||||||||||
Sbjct: 27523376 gccgacgccgccacgccgcg 27523395
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 338      cgggcacgcgacgctggccaccgc 361
                |||||||||||||| |||||||||
Sbjct: 30699353 cgggcacgcgacgcaggccaccgc 30699330
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>dbj|AP003259.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0466H10
          Length = 176530

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 274    ccgacgccgccacgccgcgg 293
              ||||||||||||||||||||
Sbjct: 128895 ccgacgccgccacgccgcgg 128914
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 293     gttccacctccgctggttcacccc 316
               ||||||||| ||||||||||||||
Sbjct: 1947402 gttccacctgcgctggttcacccc 1947425
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>dbj|AP003912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OJ1479_B11
          Length = 105702

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 273  gccgacgccgccacgccgcg 292
            ||||||||||||||||||||
Sbjct: 5666 gccgacgccgccacgccgcg 5685
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>dbj|AP006265.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1112_E06
          Length = 95069

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   gccgacgccgccacgccgcg 292
             ||||||||||||||||||||
Sbjct: 86625 gccgacgccgccacgccgcg 86644
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>dbj|AK070184.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044E03, full
           insert sequence
          Length = 1210

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 ccgacgccgccacgccgcgg 293
           ||||||||||||||||||||
Sbjct: 291 ccgacgccgccacgccgcgg 272
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 221     cgagttcaacctctcccagacggc 244
               |||||||||||||||| |||||||
Sbjct: 2475367 cgagttcaacctctccgagacggc 2475390
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>dbj|AK061252.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-G03, full
           insert sequence
          Length = 1051

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 338 cgggcacgcgacgctggccaccgc 361
           |||||||||||||| |||||||||
Sbjct: 323 cgggcacgcgacgcaggccaccgc 300
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>gb|AC166753.3| Cavia porcellus, clone Cavia porcellus-25199257D4, complete sequence
          Length = 42228

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    ctagcagtagcaggcacaga 45
             ||||||||||||||||||||
Sbjct: 22050 ctagcagtagcaggcacaga 22069


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,704,517
Number of Sequences: 3902068
Number of extensions: 2704517
Number of successful extensions: 59826
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58829
Number of HSP's gapped (non-prelim): 995
length of query: 462
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 440
effective length of database: 17,147,199,772
effective search space: 7544767899680
effective search space used: 7544767899680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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