Clone Name | bart45g03 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_483676.1| Oryza sativa (japonica cultivar-group), mRNA Length = 783 Score = 200 bits (101), Expect = 3e-48 Identities = 197/229 (86%) Strand = Plus / Plus Query: 323 tcaccttcatcttcgccacagtgggcacgattctgggagccatcacgggtgggatgattg 382 |||||||| |||||||||||||||||||||| ||||| || ||||| || ||| |||| | Sbjct: 149 tcaccttcgtcttcgccacagtgggcacgatcctgggggcgatcaccggcgggctgatcg 208 Query: 383 ggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgccatctccggcgccg 442 |||||||||||||||||||| | || || ||| | || ||||| |||||||||||||| | Sbjct: 209 ggctggcgacggagagcggcatggtgcggggcaccgggatcggggccatctccggcgcgg 268 Query: 443 tggtggccatggaggttgtcgacaggtccatggccatgtggcgctccgacgagtccgcca 502 |||| ||||||||||| |||||| ||| | ||||||||| ||||| |||| |||| | Sbjct: 269 tggtcgccatggaggtcgtcgactcctccgtcgccatgtggtgctcccacgactccggga 328 Query: 503 tctggagcgtcctatacgtgcttgacgtgatctggagcctcctgacggg 551 |||||||||| || ||||| ||||||||||||||||||||||||||||| Sbjct: 329 tctggagcgttctctacgtccttgacgtgatctggagcctcctgacggg 377
>dbj|AK105338.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-F06, full insert sequence Length = 1246 Score = 200 bits (101), Expect = 3e-48 Identities = 197/229 (86%) Strand = Plus / Plus Query: 323 tcaccttcatcttcgccacagtgggcacgattctgggagccatcacgggtgggatgattg 382 |||||||| |||||||||||||||||||||| ||||| || ||||| || ||| |||| | Sbjct: 302 tcaccttcgtcttcgccacagtgggcacgatcctgggggcgatcaccggcgggctgatcg 361 Query: 383 ggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgccatctccggcgccg 442 |||||||||||||||||||| | || || ||| | || ||||| |||||||||||||| | Sbjct: 362 ggctggcgacggagagcggcatggtgcggggcaccgggatcggggccatctccggcgcgg 421 Query: 443 tggtggccatggaggttgtcgacaggtccatggccatgtggcgctccgacgagtccgcca 502 |||| ||||||||||| |||||| ||| | ||||||||| ||||| |||| |||| | Sbjct: 422 tggtcgccatggaggtcgtcgactcctccgtcgccatgtggtgctcccacgactccggga 481 Query: 503 tctggagcgtcctatacgtgcttgacgtgatctggagcctcctgacggg 551 |||||||||| || ||||| ||||||||||||||||||||||||||||| Sbjct: 482 tctggagcgttctctacgtccttgacgtgatctggagcctcctgacggg 530
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 123 bits (62), Expect = 7e-25 Identities = 152/182 (83%) Strand = Plus / Minus Query: 340 acagtgggcacgattctgggagccatcacgggtgggatgattgggctggcgacggagagc 399 |||||||||||||| ||||| || ||||| || ||| |||| |||||||||||||||||| Sbjct: 27596268 acagtgggcacgatcctgggggcgatcaccggcgggctgatcgggctggcgacggagagc 27596209 Query: 400 ggcctcgttcgcggcgcgggcatcggtgccatctccggcgccgtggtggccatggaggtt 459 ||| | || || ||| | || ||||| |||||||||||||| ||||| ||||||||||| Sbjct: 27596208 ggcatggtgcggggcaccgggatcggggccatctccggcgcggtggtcgccatggaggtc 27596149 Query: 460 gtcgacaggtccatggccatgtggcgctccgacgagtccgccatctggagcgtcctatac 519 |||||| ||| | ||||||||| ||||| |||| |||| ||||||||||| || ||| Sbjct: 27596148 gtcgactcctccgtcgccatgtggtgctcccacgactccgggatctggagcgttctctac 27596089 Query: 520 gt 521 || Sbjct: 27596088 gt 27596087 Score = 60.0 bits (30), Expect = 8e-06 Identities = 30/30 (100%) Strand = Plus / Minus Query: 522 gcttgacgtgatctggagcctcctgacggg 551 |||||||||||||||||||||||||||||| Sbjct: 27595804 gcttgacgtgatctggagcctcctgacggg 27595775
>dbj|AP003912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1479_B11 Length = 105702 Score = 123 bits (62), Expect = 7e-25 Identities = 152/182 (83%) Strand = Plus / Minus Query: 340 acagtgggcacgattctgggagccatcacgggtgggatgattgggctggcgacggagagc 399 |||||||||||||| ||||| || ||||| || ||| |||| |||||||||||||||||| Sbjct: 78558 acagtgggcacgatcctgggggcgatcaccggcgggctgatcgggctggcgacggagagc 78499 Query: 400 ggcctcgttcgcggcgcgggcatcggtgccatctccggcgccgtggtggccatggaggtt 459 ||| | || || ||| | || ||||| |||||||||||||| ||||| ||||||||||| Sbjct: 78498 ggcatggtgcggggcaccgggatcggggccatctccggcgcggtggtcgccatggaggtc 78439 Query: 460 gtcgacaggtccatggccatgtggcgctccgacgagtccgccatctggagcgtcctatac 519 |||||| ||| | ||||||||| ||||| |||| |||| ||||||||||| || ||| Sbjct: 78438 gtcgactcctccgtcgccatgtggtgctcccacgactccgggatctggagcgttctctac 78379 Query: 520 gt 521 || Sbjct: 78378 gt 78377 Score = 60.0 bits (30), Expect = 8e-06 Identities = 30/30 (100%) Strand = Plus / Minus Query: 522 gcttgacgtgatctggagcctcctgacggg 551 |||||||||||||||||||||||||||||| Sbjct: 78094 gcttgacgtgatctggagcctcctgacggg 78065
>dbj|AK067113.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096G12, full insert sequence Length = 1316 Score = 69.9 bits (35), Expect = 8e-09 Identities = 107/131 (81%) Strand = Plus / Plus Query: 311 tccgcggcgtgatcaccttcatcttcgccacagtgggcacgattctgggagccatcacgg 370 |||||||||| ||||||||||||||||||| || || | |||| ||||| | || | Sbjct: 352 tccgcggcgtcatcaccttcatcttcgccatagctggactgtttcttggagcggtgactg 411 Query: 371 gtgggatgattgggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgcca 430 | ||| |||| |||||||| || |||||||||||| | |||||| | |||||||| |||| Sbjct: 412 gcgggctgatcgggctggccaccgagagcggcctcttccgcggcaccggcatcggcgcca 471 Query: 431 tctccggcgcc 441 || |||||||| Sbjct: 472 tcaccggcgcc 482
>dbj|AK061850.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F07, full insert sequence Length = 1202 Score = 69.9 bits (35), Expect = 8e-09 Identities = 107/131 (81%) Strand = Plus / Plus Query: 311 tccgcggcgtgatcaccttcatcttcgccacagtgggcacgattctgggagccatcacgg 370 |||||||||| ||||||||||||||||||| || || | |||| ||||| | || | Sbjct: 246 tccgcggcgtcatcaccttcatcttcgccatagctggactgtttcttggagcggtgactg 305 Query: 371 gtgggatgattgggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgcca 430 | ||| |||| |||||||| || |||||||||||| | |||||| | |||||||| |||| Sbjct: 306 gcgggctgatcgggctggccaccgagagcggcctcttccgcggcaccggcatcggcgcca 365 Query: 431 tctccggcgcc 441 || |||||||| Sbjct: 366 tcaccggcgcc 376
>ref|NM_197606.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0001O14.25), mRNA Length = 702 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 382 gggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgccatctccggcgcc 441 |||||||||||||||||||| | | |||||||| |||||||| ||||||||||||||| Sbjct: 187 gggctggcgacggagagcggaatgctgcgcggcgccggcatcggcgccatctccggcgcc 246 Query: 442 gt 443 || Sbjct: 247 gt 248
>gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O14 genomic sequence, complete sequence Length = 178022 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 382 gggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgccatctccggcgcc 441 |||||||||||||||||||| | | |||||||| |||||||| ||||||||||||||| Sbjct: 15293 gggctggcgacggagagcggaatgctgcgcggcgccggcatcggcgccatctccggcgcc 15352 Query: 442 gt 443 || Sbjct: 15353 gt 15354
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 382 gggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgccatctccggcgcc 441 |||||||||||||||||||| | | |||||||| |||||||| ||||||||||||||| Sbjct: 20752894 gggctggcgacggagagcggaatgctgcgcggcgccggcatcggcgccatctccggcgcc 20752953 Query: 442 gt 443 || Sbjct: 20752954 gt 20752955
>dbj|AK119332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-B11, full insert sequence Length = 2956 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 382 gggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgccatctccggcgcc 441 |||||||||||||||||||| | | |||||||| |||||||| ||||||||||||||| Sbjct: 223 gggctggcgacggagagcggaatgctgcgcggcgctggcatcggcgccatctccggcgcc 282 Query: 442 gt 443 || Sbjct: 283 gt 284
>dbj|AK105882.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-D04, full insert sequence Length = 1236 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 382 gggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgccatctccggcgcc 441 |||||||||||||||||||| | | |||||||| |||||||| ||||||||||||||| Sbjct: 285 gggctggcgacggagagcggaatgctgcgcggcgccggcatcggcgccatctccggcgcc 344 Query: 442 gt 443 || Sbjct: 345 gt 346
>dbj|AK099554.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013033K23, full insert sequence Length = 1159 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 382 gggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgccatctccggcgcc 441 |||||||||||||||||||| | | |||||||| |||||||| ||||||||||||||| Sbjct: 281 gggctggcgacggagagcggaatgctgcgcggcgccggcatcggcgccatctccggcgcc 340 Query: 442 gt 443 || Sbjct: 341 gt 342
>dbj|AK061763.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-B04, full insert sequence Length = 1236 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 382 gggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgccatctccggcgcc 441 |||||||||||||||||||| | | |||||||| |||||||| ||||||||||||||| Sbjct: 285 gggctggcgacggagagcggaatgctgcgcggcgccggcatcggcgccatctccggcgcc 344 Query: 442 gt 443 || Sbjct: 345 gt 346
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 382 gggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgccatctccggcgcc 441 |||||||||||||||||||| | | |||||||| |||||||| ||||||||||||||| Sbjct: 20764158 gggctggcgacggagagcggaatgctgcgcggcgccggcatcggcgccatctccggcgcc 20764217 Query: 442 gt 443 || Sbjct: 20764218 gt 20764219
>gb|BT018051.1| Zea mays clone EL01N0531F06.c mRNA sequence Length = 755 Score = 60.0 bits (30), Expect = 8e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 479 tgtggcgctccgacgagtccgccatctggagcgtcctatacgtgcttgacgtgatctgga 538 ||||||||||||||||| | || |||||||||||| | |||||||| || || ||||||| Sbjct: 114 tgtggcgctccgacgagccggcaatctggagcgtcgtctacgtgctcgatgtcatctgga 173 Query: 539 gc 540 || Sbjct: 174 gc 175
>gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic sequence, complete sequence Length = 143507 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 377 tgattgggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgccatctccg 436 |||| |||||||| || |||||||||||| | |||||| | |||||||| |||||| ||| Sbjct: 59103 tgatcgggctggccaccgagagcggcctcttccgcggcaccggcatcggcgccatcaccg 59162 Query: 437 gcgcc 441 ||||| Sbjct: 59163 gcgcc 59167 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 311 tccgcggcgtgatcaccttcatcttcgcca 340 |||||||||| ||||||||||||||||||| Sbjct: 58115 tccgcggcgtcatcaccttcatcttcgcca 58144
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 377 tgattgggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgccatctccg 436 |||| |||||||| || |||||||||||| | |||||| | |||||||| |||||| ||| Sbjct: 29978406 tgatcgggctggccaccgagagcggcctcttccgcggcaccggcatcggcgccatcaccg 29978465 Query: 437 gcgcc 441 ||||| Sbjct: 29978466 gcgcc 29978470 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 311 tccgcggcgtgatcaccttcatcttcgcca 340 |||||||||| ||||||||||||||||||| Sbjct: 29977418 tccgcggcgtcatcaccttcatcttcgcca 29977447
>dbj|AP003769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0541C02 Length = 150660 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 377 tgattgggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgccatctccg 436 |||| |||||||| || |||||||||||| | |||||| | |||||||| |||||| ||| Sbjct: 54554 tgatcgggctggccaccgagagcggcctcttccgcggcaccggcatcggcgccatcaccg 54613 Query: 437 gcgcc 441 ||||| Sbjct: 54614 gcgcc 54618 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 311 tccgcggcgtgatcaccttcatcttcgcca 340 |||||||||| ||||||||||||||||||| Sbjct: 53566 tccgcggcgtcatcaccttcatcttcgcca 53595
>dbj|AK111417.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-G04, full insert sequence Length = 2166 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 377 tgattgggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgccatctccg 436 |||| |||||||| || |||||||||||| | |||||| | |||||||| |||||| ||| Sbjct: 2044 tgatcgggctggccaccgagagcggcctcttccgcggcaccggcatcggcgccatcaccg 1985 Query: 437 gcgcc 441 ||||| Sbjct: 1984 gcgcc 1980
>ref|XM_641105.1| Dictyostelium discoideum PAK sub-family kinase (DDB0229968), partial mRNA Length = 5037 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 97 tgattctgattcaatttgttg 117 ||||||||||||||||||||| Sbjct: 2637 tgattctgattcaatttgttg 2617
>gb|AC144754.3| Ornithorhynchus anatinus clone OA_Bb-265C11, complete sequence Length = 68227 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 490 gacgagtccgccatctggagc 510 ||||||||||||||||||||| Sbjct: 32268 gacgagtccgccatctggagc 32288
>emb|AL772246.5| Human DNA sequence from clone RP13-34L8 on chromosome X Contains three novel pseudogenes, three genes for antigen G family member D2 and a GAGE family member pseudogene, complete sequence Length = 107307 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 ttctttcattcagctctaca 57 |||||||||||||||||||| Sbjct: 92437 ttctttcattcagctctaca 92456
>emb|AL078600.15|HSJ193N13 Human DNA sequence from clone RP1-193N13 on chromosome 6q21-22.31 Contains the 5' end of the MAN1A1 gene for mannosidase, alpha, class 1A, member 1 (Man9-mannosidase (MAN9), HUMM9). Contains a CpG island, complete sequence Length = 122961 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 gaggacgcggccgaggggcg 272 |||||||||||||||||||| Sbjct: 51992 gaggacgcggccgaggggcg 51973
>emb|X74837.1|HSHUMM9 H.sapiens HUMM9 mRNA Length = 3250 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 gaggacgcggccgaggggcg 272 |||||||||||||||||||| Sbjct: 888 gaggacgcggccgaggggcg 907
>gb|BC065827.1| Homo sapiens mannosidase, alpha, class 1A, member 1, mRNA (cDNA clone MGC:75419 IMAGE:30390733), complete cds Length = 1936 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 gaggacgcggccgaggggcg 272 |||||||||||||||||||| Sbjct: 700 gaggacgcggccgaggggcg 719
>gb|DQ426145.1| Uncultured bacterium clone 26.17 NifH-like (nifH) gene, partial sequence Length = 316 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 cgtccgcggcgtgatcacct 328 |||||||||||||||||||| Sbjct: 162 cgtccgcggcgtgatcacct 181
>gb|DQ425709.1| Uncultured bacterium clone 7.109 NifH-like (nifH) gene, partial sequence Length = 348 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 cgtccgcggcgtgatcacct 328 |||||||||||||||||||| Sbjct: 195 cgtccgcggcgtgatcacct 214
>emb|BX119996.7| Mouse DNA sequence from clone RP23-352G15 on chromosome X, complete sequence Length = 191635 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 atctgattctgattcaattt 113 |||||||||||||||||||| Sbjct: 169206 atctgattctgattcaattt 169187
>gb|AC112128.4| Homo sapiens 3 BAC RP11-24O5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 179604 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 aaatctttgatctcaccaacataa 27 ||||||||| |||||||||||||| Sbjct: 143808 aaatctttggtctcaccaacataa 143785
>ref|NM_005907.2| Homo sapiens mannosidase, alpha, class 1A, member 1 (MAN1A1), mRNA Length = 4139 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 gaggacgcggccgaggggcg 272 |||||||||||||||||||| Sbjct: 725 gaggacgcggccgaggggcg 744
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 tggccggctcgatcgtccgcggcg 319 |||||||||||||||||| ||||| Sbjct: 2818163 tggccggctcgatcgtccccggcg 2818186
>gb|AC132343.3| Mus musculus BAC clone RP24-175J11 from chromosome unknown, complete sequence Length = 166197 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 atctgattctgattcaattt 113 |||||||||||||||||||| Sbjct: 124844 atctgattctgattcaattt 124863
>gb|AC153505.6| Mus musculus 10 BAC RP23-336I13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 190636 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ctcatctgattctgattcaa 110 |||||||||||||||||||| Sbjct: 105551 ctcatctgattctgattcaa 105570
>dbj|AK025599.1| Homo sapiens cDNA: FLJ21946 fis, clone HEP04860, highly similar to HSHUMM9 Homo sapiens HUMM9 mRNA Length = 4141 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 gaggacgcggccgaggggcg 272 |||||||||||||||||||| Sbjct: 725 gaggacgcggccgaggggcg 744
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 ggagagcggcctcgttcgcg 412 |||||||||||||||||||| Sbjct: 2315817 ggagagcggcctcgttcgcg 2315836
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 cggcgccgtggtggccatgg 454 |||||||||||||||||||| Sbjct: 1703152 cggcgccgtggtggccatgg 1703133
>dbj|AB028074.1| Physcomitrella patens mRNA for homeobox protein PpHB3, partial cds Length = 1060 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 cggcggcaatcatggaggca 183 |||||||||||||||||||| Sbjct: 676 cggcggcaatcatggaggca 657 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,779,352 Number of Sequences: 3902068 Number of extensions: 3779352 Number of successful extensions: 83829 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83295 Number of HSP's gapped (non-prelim): 526 length of query: 558 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 535 effective length of database: 17,143,297,704 effective search space: 9171664271640 effective search space used: 9171664271640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)