ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart45g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_483676.1| Oryza sativa (japonica cultivar-group), mRNA 200 3e-48
2dbj|AK105338.1| Oryza sativa (japonica cultivar-group) cDNA clon... 200 3e-48
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 123 7e-25
4dbj|AP003912.3| Oryza sativa (japonica cultivar-group) genomic D... 123 7e-25
5dbj|AK067113.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 8e-09
6dbj|AK061850.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 8e-09
7ref|NM_197606.1| Oryza sativa (japonica cultivar-group) hypothet... 68 3e-08
8gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O14 gen... 68 3e-08
9dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
10dbj|AK119332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
11dbj|AK105882.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
12dbj|AK099554.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
13dbj|AK061763.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
14gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 68 3e-08
15gb|BT018051.1| Zea mays clone EL01N0531F06.c mRNA sequence 60 8e-06
16gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic ... 58 3e-05
17dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
18dbj|AP003769.3| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
19dbj|AK111417.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
20ref|XM_641105.1| Dictyostelium discoideum PAK sub-family kinase ... 42 1.9
21gb|AC144754.3| Ornithorhynchus anatinus clone OA_Bb-265C11, comp... 42 1.9
22emb|AL772246.5| Human DNA sequence from clone RP13-34L8 on chrom... 40 7.6
23emb|AL078600.15|HSJ193N13 Human DNA sequence from clone RP1-193N... 40 7.6
24emb|X74837.1|HSHUMM9 H.sapiens HUMM9 mRNA 40 7.6
25gb|BC065827.1| Homo sapiens mannosidase, alpha, class 1A, member... 40 7.6
26gb|DQ426145.1| Uncultured bacterium clone 26.17 NifH-like (nifH)... 40 7.6
27gb|DQ425709.1| Uncultured bacterium clone 7.109 NifH-like (nifH)... 40 7.6
28emb|BX119996.7| Mouse DNA sequence from clone RP23-352G15 on chr... 40 7.6
29gb|AC112128.4| Homo sapiens 3 BAC RP11-24O5 (Roswell Park Cancer... 40 7.6
30ref|NM_005907.2| Homo sapiens mannosidase, alpha, class 1A, memb... 40 7.6
31gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 7.6
32gb|AC132343.3| Mus musculus BAC clone RP24-175J11 from chromosom... 40 7.6
33gb|AC153505.6| Mus musculus 10 BAC RP23-336I13 (Roswell Park Can... 40 7.6
34dbj|AK025599.1| Homo sapiens cDNA: FLJ21946 fis, clone HEP04860,... 40 7.6
35gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 7.6
36gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 7.6
37dbj|AB028074.1| Physcomitrella patens mRNA for homeobox protein ... 40 7.6

>ref|XM_483676.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 783

 Score =  200 bits (101), Expect = 3e-48
 Identities = 197/229 (86%)
 Strand = Plus / Plus

                                                                       
Query: 323 tcaccttcatcttcgccacagtgggcacgattctgggagccatcacgggtgggatgattg 382
           |||||||| |||||||||||||||||||||| ||||| || ||||| || ||| |||| |
Sbjct: 149 tcaccttcgtcttcgccacagtgggcacgatcctgggggcgatcaccggcgggctgatcg 208

                                                                       
Query: 383 ggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgccatctccggcgccg 442
           |||||||||||||||||||| | || || ||| | || ||||| |||||||||||||| |
Sbjct: 209 ggctggcgacggagagcggcatggtgcggggcaccgggatcggggccatctccggcgcgg 268

                                                                       
Query: 443 tggtggccatggaggttgtcgacaggtccatggccatgtggcgctccgacgagtccgcca 502
           |||| ||||||||||| ||||||   ||| | ||||||||| ||||| |||| ||||  |
Sbjct: 269 tggtcgccatggaggtcgtcgactcctccgtcgccatgtggtgctcccacgactccggga 328

                                                            
Query: 503 tctggagcgtcctatacgtgcttgacgtgatctggagcctcctgacggg 551
           |||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct: 329 tctggagcgttctctacgtccttgacgtgatctggagcctcctgacggg 377



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>dbj|AK105338.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-F06, full
           insert sequence
          Length = 1246

 Score =  200 bits (101), Expect = 3e-48
 Identities = 197/229 (86%)
 Strand = Plus / Plus

                                                                       
Query: 323 tcaccttcatcttcgccacagtgggcacgattctgggagccatcacgggtgggatgattg 382
           |||||||| |||||||||||||||||||||| ||||| || ||||| || ||| |||| |
Sbjct: 302 tcaccttcgtcttcgccacagtgggcacgatcctgggggcgatcaccggcgggctgatcg 361

                                                                       
Query: 383 ggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgccatctccggcgccg 442
           |||||||||||||||||||| | || || ||| | || ||||| |||||||||||||| |
Sbjct: 362 ggctggcgacggagagcggcatggtgcggggcaccgggatcggggccatctccggcgcgg 421

                                                                       
Query: 443 tggtggccatggaggttgtcgacaggtccatggccatgtggcgctccgacgagtccgcca 502
           |||| ||||||||||| ||||||   ||| | ||||||||| ||||| |||| ||||  |
Sbjct: 422 tggtcgccatggaggtcgtcgactcctccgtcgccatgtggtgctcccacgactccggga 481

                                                            
Query: 503 tctggagcgtcctatacgtgcttgacgtgatctggagcctcctgacggg 551
           |||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct: 482 tctggagcgttctctacgtccttgacgtgatctggagcctcctgacggg 530



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  123 bits (62), Expect = 7e-25
 Identities = 152/182 (83%)
 Strand = Plus / Minus

                                                                            
Query: 340      acagtgggcacgattctgggagccatcacgggtgggatgattgggctggcgacggagagc 399
                |||||||||||||| ||||| || ||||| || ||| |||| ||||||||||||||||||
Sbjct: 27596268 acagtgggcacgatcctgggggcgatcaccggcgggctgatcgggctggcgacggagagc 27596209

                                                                            
Query: 400      ggcctcgttcgcggcgcgggcatcggtgccatctccggcgccgtggtggccatggaggtt 459
                ||| | || || ||| | || ||||| |||||||||||||| ||||| ||||||||||| 
Sbjct: 27596208 ggcatggtgcggggcaccgggatcggggccatctccggcgcggtggtcgccatggaggtc 27596149

                                                                            
Query: 460      gtcgacaggtccatggccatgtggcgctccgacgagtccgccatctggagcgtcctatac 519
                ||||||   ||| | ||||||||| ||||| |||| ||||  ||||||||||| || |||
Sbjct: 27596148 gtcgactcctccgtcgccatgtggtgctcccacgactccgggatctggagcgttctctac 27596089

                  
Query: 520      gt 521
                ||
Sbjct: 27596088 gt 27596087



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                              
Query: 522      gcttgacgtgatctggagcctcctgacggg 551
                ||||||||||||||||||||||||||||||
Sbjct: 27595804 gcttgacgtgatctggagcctcctgacggg 27595775



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>dbj|AP003912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1479_B11
          Length = 105702

 Score =  123 bits (62), Expect = 7e-25
 Identities = 152/182 (83%)
 Strand = Plus / Minus

                                                                         
Query: 340   acagtgggcacgattctgggagccatcacgggtgggatgattgggctggcgacggagagc 399
             |||||||||||||| ||||| || ||||| || ||| |||| ||||||||||||||||||
Sbjct: 78558 acagtgggcacgatcctgggggcgatcaccggcgggctgatcgggctggcgacggagagc 78499

                                                                         
Query: 400   ggcctcgttcgcggcgcgggcatcggtgccatctccggcgccgtggtggccatggaggtt 459
             ||| | || || ||| | || ||||| |||||||||||||| ||||| ||||||||||| 
Sbjct: 78498 ggcatggtgcggggcaccgggatcggggccatctccggcgcggtggtcgccatggaggtc 78439

                                                                         
Query: 460   gtcgacaggtccatggccatgtggcgctccgacgagtccgccatctggagcgtcctatac 519
             ||||||   ||| | ||||||||| ||||| |||| ||||  ||||||||||| || |||
Sbjct: 78438 gtcgactcctccgtcgccatgtggtgctcccacgactccgggatctggagcgttctctac 78379

               
Query: 520   gt 521
             ||
Sbjct: 78378 gt 78377



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                           
Query: 522   gcttgacgtgatctggagcctcctgacggg 551
             ||||||||||||||||||||||||||||||
Sbjct: 78094 gcttgacgtgatctggagcctcctgacggg 78065



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>dbj|AK067113.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096G12, full
           insert sequence
          Length = 1316

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 107/131 (81%)
 Strand = Plus / Plus

                                                                       
Query: 311 tccgcggcgtgatcaccttcatcttcgccacagtgggcacgattctgggagccatcacgg 370
           |||||||||| ||||||||||||||||||| ||  ||   | |||| |||||  | || |
Sbjct: 352 tccgcggcgtcatcaccttcatcttcgccatagctggactgtttcttggagcggtgactg 411

                                                                       
Query: 371 gtgggatgattgggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgcca 430
           | ||| |||| |||||||| || |||||||||||| | |||||| | |||||||| ||||
Sbjct: 412 gcgggctgatcgggctggccaccgagagcggcctcttccgcggcaccggcatcggcgcca 471

                      
Query: 431 tctccggcgcc 441
           || ||||||||
Sbjct: 472 tcaccggcgcc 482



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>dbj|AK061850.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F07, full
           insert sequence
          Length = 1202

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 107/131 (81%)
 Strand = Plus / Plus

                                                                       
Query: 311 tccgcggcgtgatcaccttcatcttcgccacagtgggcacgattctgggagccatcacgg 370
           |||||||||| ||||||||||||||||||| ||  ||   | |||| |||||  | || |
Sbjct: 246 tccgcggcgtcatcaccttcatcttcgccatagctggactgtttcttggagcggtgactg 305

                                                                       
Query: 371 gtgggatgattgggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgcca 430
           | ||| |||| |||||||| || |||||||||||| | |||||| | |||||||| ||||
Sbjct: 306 gcgggctgatcgggctggccaccgagagcggcctcttccgcggcaccggcatcggcgcca 365

                      
Query: 431 tctccggcgcc 441
           || ||||||||
Sbjct: 366 tcaccggcgcc 376



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>ref|NM_197606.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0001O14.25), mRNA
          Length = 702

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                       
Query: 382 gggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgccatctccggcgcc 441
           ||||||||||||||||||||  |  | |||||||| |||||||| |||||||||||||||
Sbjct: 187 gggctggcgacggagagcggaatgctgcgcggcgccggcatcggcgccatctccggcgcc 246

             
Query: 442 gt 443
           ||
Sbjct: 247 gt 248



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>gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O14 genomic sequence, complete
             sequence
          Length = 178022

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                         
Query: 382   gggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgccatctccggcgcc 441
             ||||||||||||||||||||  |  | |||||||| |||||||| |||||||||||||||
Sbjct: 15293 gggctggcgacggagagcggaatgctgcgcggcgccggcatcggcgccatctccggcgcc 15352

               
Query: 442   gt 443
             ||
Sbjct: 15353 gt 15354



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                            
Query: 382      gggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgccatctccggcgcc 441
                ||||||||||||||||||||  |  | |||||||| |||||||| |||||||||||||||
Sbjct: 20752894 gggctggcgacggagagcggaatgctgcgcggcgccggcatcggcgccatctccggcgcc 20752953

                  
Query: 442      gt 443
                ||
Sbjct: 20752954 gt 20752955



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>dbj|AK119332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-B11, full
           insert sequence
          Length = 2956

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                       
Query: 382 gggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgccatctccggcgcc 441
           ||||||||||||||||||||  |  | |||||||| |||||||| |||||||||||||||
Sbjct: 223 gggctggcgacggagagcggaatgctgcgcggcgctggcatcggcgccatctccggcgcc 282

             
Query: 442 gt 443
           ||
Sbjct: 283 gt 284



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>dbj|AK105882.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-D04, full
           insert sequence
          Length = 1236

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                       
Query: 382 gggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgccatctccggcgcc 441
           ||||||||||||||||||||  |  | |||||||| |||||||| |||||||||||||||
Sbjct: 285 gggctggcgacggagagcggaatgctgcgcggcgccggcatcggcgccatctccggcgcc 344

             
Query: 442 gt 443
           ||
Sbjct: 345 gt 346



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>dbj|AK099554.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013033K23, full
           insert sequence
          Length = 1159

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                       
Query: 382 gggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgccatctccggcgcc 441
           ||||||||||||||||||||  |  | |||||||| |||||||| |||||||||||||||
Sbjct: 281 gggctggcgacggagagcggaatgctgcgcggcgccggcatcggcgccatctccggcgcc 340

             
Query: 442 gt 443
           ||
Sbjct: 341 gt 342



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>dbj|AK061763.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-B04, full
           insert sequence
          Length = 1236

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                       
Query: 382 gggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgccatctccggcgcc 441
           ||||||||||||||||||||  |  | |||||||| |||||||| |||||||||||||||
Sbjct: 285 gggctggcgacggagagcggaatgctgcgcggcgccggcatcggcgccatctccggcgcc 344

             
Query: 442 gt 443
           ||
Sbjct: 345 gt 346



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                            
Query: 382      gggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgccatctccggcgcc 441
                ||||||||||||||||||||  |  | |||||||| |||||||| |||||||||||||||
Sbjct: 20764158 gggctggcgacggagagcggaatgctgcgcggcgccggcatcggcgccatctccggcgcc 20764217

                  
Query: 442      gt 443
                ||
Sbjct: 20764218 gt 20764219



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>gb|BT018051.1| Zea mays clone EL01N0531F06.c mRNA sequence
          Length = 755

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 479 tgtggcgctccgacgagtccgccatctggagcgtcctatacgtgcttgacgtgatctgga 538
           ||||||||||||||||| | || |||||||||||| | |||||||| || || |||||||
Sbjct: 114 tgtggcgctccgacgagccggcaatctggagcgtcgtctacgtgctcgatgtcatctgga 173

             
Query: 539 gc 540
           ||
Sbjct: 174 gc 175



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>gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic sequence, complete
             sequence
          Length = 143507

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                         
Query: 377   tgattgggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgccatctccg 436
             |||| |||||||| || |||||||||||| | |||||| | |||||||| |||||| |||
Sbjct: 59103 tgatcgggctggccaccgagagcggcctcttccgcggcaccggcatcggcgccatcaccg 59162

                  
Query: 437   gcgcc 441
             |||||
Sbjct: 59163 gcgcc 59167



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                           
Query: 311   tccgcggcgtgatcaccttcatcttcgcca 340
             |||||||||| |||||||||||||||||||
Sbjct: 58115 tccgcggcgtcatcaccttcatcttcgcca 58144



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                            
Query: 377      tgattgggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgccatctccg 436
                |||| |||||||| || |||||||||||| | |||||| | |||||||| |||||| |||
Sbjct: 29978406 tgatcgggctggccaccgagagcggcctcttccgcggcaccggcatcggcgccatcaccg 29978465

                     
Query: 437      gcgcc 441
                |||||
Sbjct: 29978466 gcgcc 29978470



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                              
Query: 311      tccgcggcgtgatcaccttcatcttcgcca 340
                |||||||||| |||||||||||||||||||
Sbjct: 29977418 tccgcggcgtcatcaccttcatcttcgcca 29977447



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>dbj|AP003769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0541C02
          Length = 150660

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                         
Query: 377   tgattgggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgccatctccg 436
             |||| |||||||| || |||||||||||| | |||||| | |||||||| |||||| |||
Sbjct: 54554 tgatcgggctggccaccgagagcggcctcttccgcggcaccggcatcggcgccatcaccg 54613

                  
Query: 437   gcgcc 441
             |||||
Sbjct: 54614 gcgcc 54618



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                           
Query: 311   tccgcggcgtgatcaccttcatcttcgcca 340
             |||||||||| |||||||||||||||||||
Sbjct: 53566 tccgcggcgtcatcaccttcatcttcgcca 53595



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>dbj|AK111417.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-G04, full
            insert sequence
          Length = 2166

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 377  tgattgggctggcgacggagagcggcctcgttcgcggcgcgggcatcggtgccatctccg 436
            |||| |||||||| || |||||||||||| | |||||| | |||||||| |||||| |||
Sbjct: 2044 tgatcgggctggccaccgagagcggcctcttccgcggcaccggcatcggcgccatcaccg 1985

                 
Query: 437  gcgcc 441
            |||||
Sbjct: 1984 gcgcc 1980



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>ref|XM_641105.1| Dictyostelium discoideum PAK sub-family kinase (DDB0229968), partial
            mRNA
          Length = 5037

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 97   tgattctgattcaatttgttg 117
            |||||||||||||||||||||
Sbjct: 2637 tgattctgattcaatttgttg 2617



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>gb|AC144754.3| Ornithorhynchus anatinus clone OA_Bb-265C11, complete sequence
          Length = 68227

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 490   gacgagtccgccatctggagc 510
             |||||||||||||||||||||
Sbjct: 32268 gacgagtccgccatctggagc 32288



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>emb|AL772246.5| Human DNA sequence from clone RP13-34L8 on chromosome X Contains three
             novel pseudogenes, three genes for antigen G family member
             D2 and a GAGE family member pseudogene, complete sequence
          Length = 107307

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    ttctttcattcagctctaca 57
             ||||||||||||||||||||
Sbjct: 92437 ttctttcattcagctctaca 92456



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>emb|AL078600.15|HSJ193N13 Human DNA sequence from clone RP1-193N13 on chromosome 6q21-22.31
             Contains the 5' end of the MAN1A1 gene for mannosidase,
             alpha, class 1A, member 1 (Man9-mannosidase (MAN9),
             HUMM9). Contains a CpG island, complete sequence
          Length = 122961

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   gaggacgcggccgaggggcg 272
             ||||||||||||||||||||
Sbjct: 51992 gaggacgcggccgaggggcg 51973



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>emb|X74837.1|HSHUMM9 H.sapiens HUMM9 mRNA
          Length = 3250

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 253 gaggacgcggccgaggggcg 272
           ||||||||||||||||||||
Sbjct: 888 gaggacgcggccgaggggcg 907



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>gb|BC065827.1| Homo sapiens mannosidase, alpha, class 1A, member 1, mRNA (cDNA
           clone MGC:75419 IMAGE:30390733), complete cds
          Length = 1936

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 253 gaggacgcggccgaggggcg 272
           ||||||||||||||||||||
Sbjct: 700 gaggacgcggccgaggggcg 719



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>gb|DQ426145.1| Uncultured bacterium clone 26.17 NifH-like (nifH) gene, partial
           sequence
          Length = 316

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 309 cgtccgcggcgtgatcacct 328
           ||||||||||||||||||||
Sbjct: 162 cgtccgcggcgtgatcacct 181



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>gb|DQ425709.1| Uncultured bacterium clone 7.109 NifH-like (nifH) gene, partial
           sequence
          Length = 348

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 309 cgtccgcggcgtgatcacct 328
           ||||||||||||||||||||
Sbjct: 195 cgtccgcggcgtgatcacct 214



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>emb|BX119996.7| Mouse DNA sequence from clone RP23-352G15 on chromosome X, complete
              sequence
          Length = 191635

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 94     atctgattctgattcaattt 113
              ||||||||||||||||||||
Sbjct: 169206 atctgattctgattcaattt 169187



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>gb|AC112128.4| Homo sapiens 3 BAC RP11-24O5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 179604

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 4      aaatctttgatctcaccaacataa 27
              ||||||||| ||||||||||||||
Sbjct: 143808 aaatctttggtctcaccaacataa 143785



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>ref|NM_005907.2| Homo sapiens mannosidase, alpha, class 1A, member 1 (MAN1A1), mRNA
          Length = 4139

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 253 gaggacgcggccgaggggcg 272
           ||||||||||||||||||||
Sbjct: 725 gaggacgcggccgaggggcg 744



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 296     tggccggctcgatcgtccgcggcg 319
               |||||||||||||||||| |||||
Sbjct: 2818163 tggccggctcgatcgtccccggcg 2818186



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>gb|AC132343.3| Mus musculus BAC clone RP24-175J11 from chromosome unknown, complete
              sequence
          Length = 166197

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     atctgattctgattcaattt 113
              ||||||||||||||||||||
Sbjct: 124844 atctgattctgattcaattt 124863



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>gb|AC153505.6| Mus musculus 10 BAC RP23-336I13 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 190636

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     ctcatctgattctgattcaa 110
              ||||||||||||||||||||
Sbjct: 105551 ctcatctgattctgattcaa 105570



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>dbj|AK025599.1| Homo sapiens cDNA: FLJ21946 fis, clone HEP04860, highly similar to
           HSHUMM9 Homo sapiens HUMM9 mRNA
          Length = 4141

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 253 gaggacgcggccgaggggcg 272
           ||||||||||||||||||||
Sbjct: 725 gaggacgcggccgaggggcg 744



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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 393     ggagagcggcctcgttcgcg 412
               ||||||||||||||||||||
Sbjct: 2315817 ggagagcggcctcgttcgcg 2315836



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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 435     cggcgccgtggtggccatgg 454
               ||||||||||||||||||||
Sbjct: 1703152 cggcgccgtggtggccatgg 1703133



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>dbj|AB028074.1| Physcomitrella patens mRNA for homeobox protein PpHB3, partial cds
          Length = 1060

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 164 cggcggcaatcatggaggca 183
           ||||||||||||||||||||
Sbjct: 676 cggcggcaatcatggaggca 657


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,779,352
Number of Sequences: 3902068
Number of extensions: 3779352
Number of successful extensions: 83829
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83295
Number of HSP's gapped (non-prelim): 526
length of query: 558
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 535
effective length of database: 17,143,297,704
effective search space: 9171664271640
effective search space used: 9171664271640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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