ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart45f09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT014685.1| Oryza sativa AK104912 mRNA sequence Length = 807 Score = 56.0 bits (28), Expect = 8e-06 Identities = 31/32 (96%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctacttg 43 ||||||||||||| |||||||||||||||||| Sbjct: 230 actccgccggcaccgtcaccaccttctacttg 261
>dbj|AK104912.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-C02, full insert sequence Length = 1208 Score = 56.0 bits (28), Expect = 8e-06 Identities = 31/32 (96%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctacttg 43 ||||||||||||| |||||||||||||||||| Sbjct: 338 actccgccggcaccgtcaccaccttctacttg 369
>dbj|AK066125.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059H08, full insert sequence Length = 1208 Score = 56.0 bits (28), Expect = 8e-06 Identities = 31/32 (96%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctacttg 43 ||||||||||||| |||||||||||||||||| Sbjct: 338 actccgccggcaccgtcaccaccttctacttg 369
>ref|XM_473788.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 822 Score = 54.0 bits (27), Expect = 3e-05 Identities = 30/31 (96%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctactt 42 |||||||||||||||||||||||| |||||| Sbjct: 236 actccgccggcacggtcaccacctgctactt 266
>gb|AF443603.1|AF443603 Oryza sativa xyloglucan endotransglycosylase mRNA, complete cds Length = 1162 Score = 54.0 bits (27), Expect = 3e-05 Identities = 30/31 (96%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctactt 42 |||||||||||||||||||||||| |||||| Sbjct: 308 actccgccggcacggtcaccacctgctactt 338
>dbj|AK070734.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062B10, full insert sequence Length = 1109 Score = 54.0 bits (27), Expect = 3e-05 Identities = 30/31 (96%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctactt 42 |||||||||||||||||||||||| |||||| Sbjct: 326 actccgccggcacggtcaccacctgctactt 356
>ref|XM_480875.1| Oryza sativa (japonica cultivar-group), mRNA Length = 906 Score = 50.1 bits (25), Expect = 5e-04 Identities = 31/33 (93%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctacttga 44 ||||||||||||| ||||||||| ||||||||| Sbjct: 287 actccgccggcaccgtcaccaccctctacttga 319
>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041J17, complete sequence Length = 148829 Score = 50.1 bits (25), Expect = 5e-04 Identities = 31/33 (93%) Strand = Plus / Plus Query: 8 ggcgactccgccggcacggtcaccaccttctac 40 ||||||||||||||||| |||||| |||||||| Sbjct: 113325 ggcgactccgccggcaccgtcaccgccttctac 113357
>gb|AC136481.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0007D07, complete sequence Length = 133930 Score = 50.1 bits (25), Expect = 5e-04 Identities = 31/33 (93%) Strand = Plus / Plus Query: 8 ggcgactccgccggcacggtcaccaccttctac 40 ||||||||||||||||| |||||| |||||||| Sbjct: 12944 ggcgactccgccggcaccgtcaccgccttctac 12976
>emb|X93175.1|HVXETXEB H.vulgare mRNA for xyloglucan endotransglycosylase-like protein (XEB) Length = 1226 Score = 50.1 bits (25), Expect = 5e-04 Identities = 28/29 (96%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctac 40 ||||||||||||| ||||||||||||||| Sbjct: 342 actccgccggcaccgtcaccaccttctac 370
>emb|X91659.1|HVEXTGENE H.vulgare mRNA for endoxyloglucan transferase Length = 1175 Score = 50.1 bits (25), Expect = 5e-04 Identities = 31/33 (93%) Strand = Plus / Plus Query: 8 ggcgactccgccggcacggtcaccaccttctac 40 ||||||||||||||||| |||||| |||||||| Sbjct: 338 ggcgactccgccggcacagtcaccgccttctac 370
>emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02, complete sequence Length = 166804 Score = 50.1 bits (25), Expect = 5e-04 Identities = 28/29 (96%) Strand = Plus / Minus Query: 12 actccgccggcacggtcaccaccttctac 40 |||||||||||||||||||||||| |||| Sbjct: 150553 actccgccggcacggtcaccacctgctac 150525 Score = 40.1 bits (20), Expect = 0.48 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 cgactccgccggcacggtcaccac 33 ||||||||||||||| |||||||| Sbjct: 141966 cgactccgccggcaccgtcaccac 141943
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 50.1 bits (25), Expect = 5e-04 Identities = 28/29 (96%) Strand = Plus / Minus Query: 12 actccgccggcacggtcaccaccttctac 40 |||||||||||||||||||||||| |||| Sbjct: 30517176 actccgccggcacggtcaccacctgctac 30517148 Score = 40.1 bits (20), Expect = 0.48 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 cgactccgccggcacggtcaccac 33 ||||||||||||||| |||||||| Sbjct: 30508589 cgactccgccggcaccgtcaccac 30508566 Score = 38.2 bits (19), Expect = 1.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 18 ccggcacggtcaccaccttctac 40 ||||||||||| ||||||||||| Sbjct: 30557204 ccggcacggtcgccaccttctac 30557182
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 50.1 bits (25), Expect = 5e-04 Identities = 31/33 (93%) Strand = Plus / Plus Query: 8 ggcgactccgccggcacggtcaccaccttctac 40 ||||||||||||||||| |||||| |||||||| Sbjct: 19010127 ggcgactccgccggcaccgtcaccgccttctac 19010159
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 50.1 bits (25), Expect = 5e-04 Identities = 28/29 (96%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctac 40 ||||||||||||| ||||||||||||||| Sbjct: 28749790 actccgccggcaccgtcaccaccttctac 28749818 Score = 42.1 bits (21), Expect = 0.12 Identities = 27/29 (93%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctac 40 ||||||||||||| ||| ||||||||||| Sbjct: 28761570 actccgccggcaccgtcgccaccttctac 28761598
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 5e-04 Identities = 28/29 (96%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctac 40 ||||||||||||| ||||||||||||||| Sbjct: 10358920 actccgccggcaccgtcaccaccttctac 10358948
>gb|AY589589.1| Triticum aestivum endotransglucosylase/hydrolase XTH5 mRNA, complete cds Length = 1056 Score = 50.1 bits (25), Expect = 5e-04 Identities = 28/29 (96%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctac 40 ||||||||||||| ||||||||||||||| Sbjct: 236 actccgccggcaccgtcaccaccttctac 264
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0028E05 Length = 157631 Score = 50.1 bits (25), Expect = 5e-04 Identities = 28/29 (96%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctac 40 ||||||||||||| ||||||||||||||| Sbjct: 57565 actccgccggcaccgtcaccaccttctac 57593 Score = 42.1 bits (21), Expect = 0.12 Identities = 27/29 (93%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctac 40 ||||||||||||| ||| ||||||||||| Sbjct: 69345 actccgccggcaccgtcgccaccttctac 69373
>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0622F03 Length = 170064 Score = 50.1 bits (25), Expect = 5e-04 Identities = 28/29 (96%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctac 40 ||||||||||||| ||||||||||||||| Sbjct: 150356 actccgccggcaccgtcaccaccttctac 150384 Score = 42.1 bits (21), Expect = 0.12 Identities = 27/29 (93%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctac 40 ||||||||||||| ||| ||||||||||| Sbjct: 162136 actccgccggcaccgtcgccaccttctac 162164
>dbj|AP005398.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0669G10 Length = 133372 Score = 50.1 bits (25), Expect = 5e-04 Identities = 28/29 (96%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctac 40 ||||||||||||| ||||||||||||||| Sbjct: 1342 actccgccggcaccgtcaccaccttctac 1370
>dbj|AP004872.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0444A09 Length = 125900 Score = 50.1 bits (25), Expect = 5e-04 Identities = 28/29 (96%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctac 40 ||||||||||||| ||||||||||||||| Sbjct: 124730 actccgccggcaccgtcaccaccttctac 124758
>dbj|AK071574.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105D14, full insert sequence Length = 977 Score = 50.1 bits (25), Expect = 5e-04 Identities = 31/33 (93%) Strand = Plus / Plus Query: 8 ggcgactccgccggcacggtcaccaccttctac 40 ||||||||||||||||| |||||| |||||||| Sbjct: 289 ggcgactccgccggcaccgtcaccgccttctac 321
>dbj|AK061093.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-A02, full insert sequence Length = 1053 Score = 50.1 bits (25), Expect = 5e-04 Identities = 31/33 (93%) Strand = Plus / Plus Query: 8 ggcgactccgccggcacggtcaccaccttctac 40 ||||||||||||||||| |||||| |||||||| Sbjct: 286 ggcgactccgccggcaccgtcaccgccttctac 318
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 50.1 bits (25), Expect = 5e-04 Identities = 31/33 (93%) Strand = Plus / Plus Query: 8 ggcgactccgccggcacggtcaccaccttctac 40 ||||||||||||||||| |||||| |||||||| Sbjct: 19168776 ggcgactccgccggcaccgtcaccgccttctac 19168808
>dbj|D16457.1|WHTEXT4 Wheat mRNA for endo-xyloglucan transferase, complete cds Length = 1088 Score = 50.1 bits (25), Expect = 5e-04 Identities = 31/33 (93%) Strand = Plus / Plus Query: 8 ggcgactccgccggcacggtcaccaccttctac 40 ||||||||||||||||| |||||| |||||||| Sbjct: 299 ggcgactccgccggcaccgtcaccgccttctac 331
>ref|XM_473793.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 966 Score = 46.1 bits (23), Expect = 0.008 Identities = 29/31 (93%) Strand = Plus / Plus Query: 18 ccggcacggtcaccaccttctacttgacatc 48 ||||||||||| ||||||||||| ||||||| Sbjct: 293 ccggcacggtcgccaccttctacctgacatc 323
>dbj|AK059203.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-A11, full insert sequence Length = 1234 Score = 46.1 bits (23), Expect = 0.008 Identities = 29/31 (93%) Strand = Plus / Plus Query: 18 ccggcacggtcaccaccttctacttgacatc 48 ||||||||||| ||||||||||| ||||||| Sbjct: 361 ccggcacggtcgccaccttctacctgacatc 391
>gb|AY105365.1| Zea mays PCO092487 mRNA sequence Length = 1253 Score = 46.1 bits (23), Expect = 0.008 Identities = 32/35 (91%) Strand = Plus / Plus Query: 5 ccgggcgactccgccggcacggtcaccaccttcta 39 ||||| |||||||||||||| ||| |||||||||| Sbjct: 342 ccgggggactccgccggcaccgtcgccaccttcta 376
>gb|AY103775.1| Zea mays PCO076979 mRNA sequence Length = 1495 Score = 46.1 bits (23), Expect = 0.008 Identities = 35/39 (89%) Strand = Plus / Plus Query: 2 gtgccgggcgactccgccggcacggtcaccaccttctac 40 ||||||||| ||||||||||||| |||||| ||| |||| Sbjct: 375 gtgccgggcaactccgccggcaccgtcaccgcctactac 413
>gb|U15964.1|ZMU15964 Zea mays xyloglucan endo-transglycosylase homolog gene, complete cds Length = 1827 Score = 46.1 bits (23), Expect = 0.008 Identities = 32/35 (91%) Strand = Plus / Plus Query: 5 ccgggcgactccgccggcacggtcaccaccttcta 39 ||||| |||||||||||||| ||| |||||||||| Sbjct: 232 ccgggggactccgccggcaccgtcgccaccttcta 266
>gb|U15781.1|ZMU15781 Zea mays xyloglucan endo-transglycosylase homolog mRNA, complete cds Length = 1221 Score = 46.1 bits (23), Expect = 0.008 Identities = 32/35 (91%) Strand = Plus / Plus Query: 5 ccgggcgactccgccggcacggtcaccaccttcta 39 ||||| |||||||||||||| ||| |||||||||| Sbjct: 349 ccgggggactccgccggcaccgtcgccaccttcta 383
>emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotransglycosylase-like protein (PM5) Length = 1188 Score = 44.1 bits (22), Expect = 0.031 Identities = 31/34 (91%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctacttgac 45 ||||||||||||| |||||| |||||||| |||| Sbjct: 312 actccgccggcaccgtcacctccttctacctgac 345
>emb|X91660.1|HVPM2GENE H.vulgare mRNA for xyloglucan endotransglycosylase-like protein Length = 1110 Score = 44.1 bits (22), Expect = 0.031 Identities = 31/34 (91%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctacttgac 45 ||||||||||||| |||||| |||||||| |||| Sbjct: 288 actccgccggcaccgtcacctccttctacctgac 321
>gb|AY589588.1| Triticum aestivum endotransglucosylase/hydrolase XTH4 mRNA, complete cds Length = 1100 Score = 44.1 bits (22), Expect = 0.031 Identities = 31/34 (91%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctacttgac 45 ||||||||||||| |||||| |||||||| |||| Sbjct: 297 actccgccggcacagtcacctccttctacctgac 330
>gb|AY589587.1| Triticum aestivum endotransglucosylase/hydrolase XTH3 mRNA, complete cds Length = 938 Score = 44.1 bits (22), Expect = 0.031 Identities = 31/34 (91%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctacttgac 45 ||||||||||||| |||||| |||||||| |||| Sbjct: 300 actccgccggcaccgtcacctccttctacctgac 333
>gb|AY589586.1| Triticum aestivum endotransglucosylase/hydrolase XTH2 mRNA, complete cds Length = 1107 Score = 44.1 bits (22), Expect = 0.031 Identities = 31/34 (91%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctacttgac 45 ||||||||||||| |||||| |||||||| |||| Sbjct: 301 actccgccggcaccgtcacctccttctacctgac 334
>gb|AY589585.1| Triticum aestivum endotransglucosylase/hydrolase XTH1 mRNA, complete cds Length = 958 Score = 44.1 bits (22), Expect = 0.031 Identities = 31/34 (91%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctacttgac 45 ||||||||||||| |||||| |||||||| |||| Sbjct: 301 actccgccggcaccgtcacctccttctacctgac 334
>ref|XM_507172.1| PREDICTED Oryza sativa (japonica cultivar-group), P0682A06.17 mRNA Length = 1127 Score = 42.1 bits (21), Expect = 0.12 Identities = 27/29 (93%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctac 40 ||||||||||||| |||||| |||||||| Sbjct: 300 actccgccggcaccgtcacctccttctac 328
>ref|XM_480868.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1111 Score = 42.1 bits (21), Expect = 0.12 Identities = 27/29 (93%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctac 40 ||||||||||||| |||||| |||||||| Sbjct: 305 actccgccggcaccgtcacctccttctac 333
>gb|AY023104.1| Oryza sativa microsatellite MRG5429 containing (GAG)X9, genomic sequence Length = 227 Score = 42.1 bits (21), Expect = 0.12 Identities = 27/29 (93%) Strand = Plus / Minus Query: 12 actccgccggcacggtcaccaccttctac 40 ||||||||||||| ||||||||| ||||| Sbjct: 167 actccgccggcaccgtcaccaccctctac 139
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 0.12 Identities = 27/29 (93%) Strand = Plus / Minus Query: 12 actccgccggcacggtcaccaccttctac 40 ||||||||||||| ||||||||| ||||| Sbjct: 8379170 actccgccggcaccgtcaccaccctctac 8379142 Score = 42.1 bits (21), Expect = 0.12 Identities = 27/29 (93%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctac 40 ||||||||||||| |||||| |||||||| Sbjct: 8321973 actccgccggcaccgtcacctccttctac 8322001
>dbj|AB196976.1| Sagittaria pygmaea SpXTH3 mRNA for xyloglucan endotransglucosylase/hydrolase, complete cds Length = 1273 Score = 42.1 bits (21), Expect = 0.12 Identities = 27/29 (93%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctac 40 |||| |||||||| ||||||||||||||| Sbjct: 399 actcagccggcaccgtcaccaccttctac 427
>dbj|AB110604.1| Oryza sativa (japonica cultivar-group) OsXRT5 mRNA for xyloglucan endotransglycosylase-related protein 5, complete cds Length = 1280 Score = 42.1 bits (21), Expect = 0.12 Identities = 27/29 (93%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctac 40 ||||||||||||| |||||| |||||||| Sbjct: 296 actccgccggcaccgtcacctccttctac 324
>dbj|AP004705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0682A06 Length = 142023 Score = 42.1 bits (21), Expect = 0.12 Identities = 27/29 (93%) Strand = Plus / Minus Query: 12 actccgccggcacggtcaccaccttctac 40 ||||||||||||| ||||||||| ||||| Sbjct: 119279 actccgccggcaccgtcaccaccctctac 119251 Score = 42.1 bits (21), Expect = 0.12 Identities = 27/29 (93%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctac 40 ||||||||||||| |||||| |||||||| Sbjct: 62082 actccgccggcaccgtcacctccttctac 62110
>dbj|AK105934.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-B05, full insert sequence Length = 1101 Score = 42.1 bits (21), Expect = 0.12 Identities = 27/29 (93%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctac 40 ||||||||||||| ||| ||||||||||| Sbjct: 336 actccgccggcaccgtcgccaccttctac 364
>dbj|AK104451.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-F05, full insert sequence Length = 1111 Score = 42.1 bits (21), Expect = 0.12 Identities = 27/29 (93%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctac 40 ||||||||||||| |||||| |||||||| Sbjct: 305 actccgccggcaccgtcacctccttctac 333
>dbj|AK060654.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H12, full insert sequence Length = 1127 Score = 42.1 bits (21), Expect = 0.12 Identities = 27/29 (93%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctac 40 ||||||||||||| |||||| |||||||| Sbjct: 300 actccgccggcaccgtcacctccttctac 328
>gb|AY103891.1| Zea mays PCO065722 mRNA sequence Length = 1280 Score = 42.1 bits (21), Expect = 0.12 Identities = 21/21 (100%) Strand = Plus / Plus Query: 20 ggcacggtcaccaccttctac 40 ||||||||||||||||||||| Sbjct: 375 ggcacggtcaccaccttctac 395
>ref|XM_473787.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 882 Score = 40.1 bits (20), Expect = 0.48 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 cgactccgccggcacggtcaccac 33 ||||||||||||||| |||||||| Sbjct: 258 cgactccgccggcaccgtcaccac 281
>emb|AJ295944.1|FPR295944 Festuca pratensis mRNA for Xet2 protein Length = 1189 Score = 40.1 bits (20), Expect = 0.48 Identities = 26/28 (92%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttcta 39 ||||||||||||| |||||| ||||||| Sbjct: 305 actccgccggcaccgtcacctccttcta 332
>dbj|AK120345.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063H05, full insert sequence Length = 566 Score = 40.1 bits (20), Expect = 0.48 Identities = 29/32 (90%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctacttg 43 ||||||||||||| |||||| ||| ||||||| Sbjct: 355 actccgccggcaccgtcaccgcctactacttg 386
>dbj|AK105513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-F01, full insert sequence Length = 1253 Score = 40.1 bits (20), Expect = 0.48 Identities = 29/32 (90%) Strand = Plus / Plus Query: 12 actccgccggcacggtcaccaccttctacttg 43 ||||||||||||| |||||| ||| ||||||| Sbjct: 345 actccgccggcaccgtcaccgcctactacttg 376
>dbj|AK099651.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013065F24, full insert sequence Length = 872 Score = 40.1 bits (20), Expect = 0.48 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 cgactccgccggcacggtcaccac 33 ||||||||||||||| |||||||| Sbjct: 293 cgactccgccggcaccgtcaccac 270
>dbj|AK063614.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-D08, full insert sequence Length = 1041 Score = 40.1 bits (20), Expect = 0.48 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 cgactccgccggcacggtcaccac 33 ||||||||||||||| |||||||| Sbjct: 321 cgactccgccggcaccgtcaccac 344
>ref|NM_185053.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1119 Score = 38.2 bits (19), Expect = 1.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 16 cgccggcacggtcaccaccttct 38 |||||||||||| |||||||||| Sbjct: 861 cgccggcacggtgaccaccttct 839
>gb|AY440340.1| Armigeres subalbatus ASAP ID: 41351 thymidylate kinase mRNA sequence Length = 559 Score = 38.2 bits (19), Expect = 1.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 17 gccggcacggtcaccaccttcta 39 |||||||||||||| |||||||| Sbjct: 120 gccggcacggtcacaaccttcta 98
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 1.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 16 cgccggcacggtcaccaccttct 38 |||||||||||| |||||||||| Sbjct: 32983972 cgccggcacggtgaccaccttct 32983950
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 38.2 bits (19), Expect = 1.9 Identities = 28/31 (90%) Strand = Plus / Minus Query: 1 cgtgccgggcgactccgccggcacggtcacc 31 |||||||| |||| | ||||||||||||||| Sbjct: 236932 cgtgccggtcgacgctgccggcacggtcacc 236902 Score = 36.2 bits (18), Expect = 7.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 8 ggcgactccgccggcacggtca 29 ||||||| |||||||||||||| Sbjct: 4084116 ggcgacttcgccggcacggtca 4084137
>gb|AC093713.6| Oryza sativa chromosome 3 BAC OSJNBa0094F01 genomic sequence, complete sequence Length = 151479 Score = 38.2 bits (19), Expect = 1.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 16 cgccggcacggtcaccaccttct 38 |||||||||||| |||||||||| Sbjct: 6203 cgccggcacggtgaccaccttct 6225
>emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015N08, complete sequence Length = 129037 Score = 38.2 bits (19), Expect = 1.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 18 ccggcacggtcaccaccttctac 40 ||||||||||| ||||||||||| Sbjct: 32912 ccggcacggtcgccaccttctac 32890
>emb|AJ632270.1| Actinoplanes teichomyceticus teicoplanin gene cluster Length = 89976 Score = 38.2 bits (19), Expect = 1.9 Identities = 25/27 (92%) Strand = Plus / Plus Query: 1 cgtgccgggcgactccgccggcacggt 27 |||||||||||||| ||||||| |||| Sbjct: 34186 cgtgccgggcgacttcgccggcgcggt 34212
>emb|AJ605139.1| Actinoplanes teichomyceticus gene cluster for biosynthesis of glycopeptide antibiotic teicoplanin Length = 89713 Score = 38.2 bits (19), Expect = 1.9 Identities = 25/27 (92%) Strand = Plus / Plus Query: 1 cgtgccgggcgactccgccggcacggt 27 |||||||||||||| ||||||| |||| Sbjct: 40793 cgtgccgggcgacttcgccggcgcggt 40819
>tpg|BK005009.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) WRKY transcription factor 6 (WRKY6) gene, complete cds Length = 1552 Score = 38.2 bits (19), Expect = 1.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 16 cgccggcacggtcaccaccttct 38 |||||||||||| |||||||||| Sbjct: 965 cgccggcacggtgaccaccttct 943
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 cacggtcaccaccttctac 40 ||||||||||||||||||| Sbjct: 526570 cacggtcaccaccttctac 526552
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 1.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 16 cgccggcacggtcaccaccttct 38 |||||||||||| |||||||||| Sbjct: 33074482 cgccggcacggtgaccaccttct 33074460
>gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 genomic sequence, complete sequence Length = 139823 Score = 38.2 bits (19), Expect = 1.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 16 cgccggcacggtcaccaccttct 38 |||||||||||| |||||||||| Sbjct: 139336 cgccggcacggtgaccaccttct 139358
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 16 cgccggcacggtcaccacc 34 ||||||||||||||||||| Sbjct: 1774672 cgccggcacggtcaccacc 1774690
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 38.2 bits (19), Expect = 1.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 ggcgactccgccggcacgg 26 ||||||||||||||||||| Sbjct: 1659836 ggcgactccgccggcacgg 1659818
>gb|AC102197.7| Mus musculus chromosome 1, clone RP24-466J11, complete sequence Length = 150253 Score = 36.2 bits (18), Expect = 7.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 2 gtgccgggcgactccgccggca 23 ||||||||||||||||| |||| Sbjct: 3010 gtgccgggcgactccgctggca 3031
>gb|AC146229.2| Pan troglodytes BAC clone RP43-33B3 from 7, complete sequence Length = 186222 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 37 ctacttgacatccaagga 54 |||||||||||||||||| Sbjct: 60725 ctacttgacatccaagga 60708
>gb|AC147082.2| Mus musculus BAC clone RP23-321E5 from chromosome 9, complete sequence Length = 202957 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 22 cacggtcaccaccttcta 39 |||||||||||||||||| Sbjct: 33998 cacggtcaccaccttcta 34015
>gb|AC073141.4| Homo sapiens BAC clone RP11-733D19 from 7, complete sequence Length = 151073 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 37 ctacttgacatccaagga 54 |||||||||||||||||| Sbjct: 59913 ctacttgacatccaagga 59896
>gb|AC117219.2| Mus musculus BAC clone RP23-344D18 from chromosome 9, complete sequence Length = 216199 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 22 cacggtcaccaccttcta 39 |||||||||||||||||| Sbjct: 116783 cacggtcaccaccttcta 116800
>gb|AC124314.7| Mus musculus chromosome 10, clone RP23-193B6, complete sequence Length = 232720 Score = 36.2 bits (18), Expect = 7.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 7 gggcgactccgccggcacggtc 28 ||||||||||||||||| |||| Sbjct: 219015 gggcgactccgccggcaaggtc 219036
>gb|AC159654.8| Mus musculus 6 BAC RP23-234C22 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 231034 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 6 cgggcgactccgccggca 23 |||||||||||||||||| Sbjct: 114851 cgggcgactccgccggca 114868
>gb|AC153916.2| Mus musculus 6 BAC RP23-93D20 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 221540 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 6 cgggcgactccgccggca 23 |||||||||||||||||| Sbjct: 24686 cgggcgactccgccggca 24669
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 17 gccggcacggtcaccacc 34 |||||||||||||||||| Sbjct: 2574136 gccggcacggtcaccacc 2574119
>gb|AC099489.2| Homo sapiens chromosome 16 clone CTD-3088G3, complete sequence Length = 204493 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 28 caccaccttctacttgac 45 |||||||||||||||||| Sbjct: 124991 caccaccttctacttgac 124974
>gb|AC102207.15| Mus musculus chromosome 1, clone RP24-262A17, complete sequence Length = 143489 Score = 36.2 bits (18), Expect = 7.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 2 gtgccgggcgactccgccggca 23 ||||||||||||||||| |||| Sbjct: 91048 gtgccgggcgactccgctggca 91069
>gb|AC153531.5| Mus musculus 10 BAC RP23-22C3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 186219 Score = 36.2 bits (18), Expect = 7.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 7 gggcgactccgccggcacggtc 28 ||||||||||||||||| |||| Sbjct: 63294 gggcgactccgccggcaaggtc 63315
>gb|AC005871.3|AC005871 citb_109_p_11, complete sequence Length = 186418 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 caccttctacttgacatc 48 |||||||||||||||||| Sbjct: 59649 caccttctacttgacatc 59632
>gb|AY103552.1| Zea mays PCO075057 mRNA sequence Length = 1380 Score = 36.2 bits (18), Expect = 7.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 1 cgtgccgggcgactccgccggc 22 ||||||||| |||||||||||| Sbjct: 330 cgtgccgggggactccgccggc 351
>gb|AY098522.1| Ananas comosus xyloglucan endotransglycosylase mRNA, partial cds Length = 742 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 26 gtcaccaccttctacttg 43 |||||||||||||||||| Sbjct: 25 gtcaccaccttctacttg 42
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 cgtgccgggcgactccgc 18 |||||||||||||||||| Sbjct: 687514 cgtgccgggcgactccgc 687497
>gb|AC132328.3| Mus musculus BAC clone RP24-195C6 from 10, complete sequence Length = 146064 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 6 cgggcgactccgccggca 23 |||||||||||||||||| Sbjct: 73952 cgggcgactccgccggca 73935
>emb|AL806518.6| Mouse DNA sequence from clone RP23-25B10 on chromosome 4, complete sequence Length = 224459 Score = 36.2 bits (18), Expect = 7.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 6 cgggcgactccgccggca 23 |||||||||||||||||| Sbjct: 195805 cgggcgactccgccggca 195822 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 317,663 Number of Sequences: 3902068 Number of extensions: 317663 Number of successful extensions: 75565 Number of sequences better than 10.0: 86 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74453 Number of HSP's gapped (non-prelim): 1112 length of query: 54 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 34 effective length of database: 17,155,003,908 effective search space: 583270132872 effective search space used: 583270132872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)
