Clone Name | bart45f07 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_472739.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1092 Score = 272 bits (137), Expect = 1e-69 Identities = 335/401 (83%) Strand = Plus / Plus Query: 138 gcgctggccggcggcgccgacgcgaggaagatggtcggcgtgtacgagctcaagagaggc 197 ||||| ||||||||||||| |||||||||| |||||||| ||||| ||||| || || Sbjct: 61 gcgctcgccggcggcgccggtgcgaggaagacggtcggcgagtacgtgctcaggaagggg 120 Query: 198 gatttctccgtcaagatgaccaactggggcgccaccatcatgtccatcctcgtccctgat 257 || |||||||| ||||| ||||||||||| || ||||| ||||| || || |||||||| Sbjct: 121 gacttctccgtgaagatcaccaactggggagcaaccatgatgtcggtcgtcctccctgat 180 Query: 258 tccaaagggaatttggccgatgttgtgctgggcatggacaccctcgctgaatatgttaat 317 ||||||||||||||||| ||||||||||| ||| | |||||| | ||||| || || || Sbjct: 181 tccaaagggaatttggctgatgttgtgcttggcctagacaccattgctgagtacgtgaac 240 Query: 318 gacacctcttactttgggccgctgaatgggagggtggcgcagaggatggccaggggccgc 377 ||||| |||||| |||||| | | || |||| | ||||||||| |||||||| || Sbjct: 241 gacactaattacttcgggccggttaccggacgggtcgggcagaggatagccagggggcgg 300 Query: 378 ttcgtcctcgacggcaaagtataccatacctacctcaacgacggcaagaacgcaattcat 437 ||||| |||||||| || || || || || ||| |||||||||||| |||||| ||||| Sbjct: 301 ttcgttctcgacgggaaggtgtatcacacgtacatcaacgacggcaggaacgcgattcac 360 Query: 438 ggtggcaaaagggggttcagcaaggtgatatggacggtgaaggagtacgccgccggcggc 497 ||||| | || ||||||||||| || |||||||||||||||||||||| || ||||||| Sbjct: 361 ggtggacacagagggttcagcaaagtcatatggacggtgaaggagtacgtcggcggcggc 420 Query: 498 gactccccgtacatcaccatgtactaccgcagcttcgacgg 538 ||||| |||||||||||| |||||||||||||||||||||| Sbjct: 421 gactcgccgtacatcaccttgtactaccgcagcttcgacgg 461
>dbj|AK106058.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F10, full insert sequence Length = 1343 Score = 172 bits (87), Expect = 8e-40 Identities = 159/183 (86%) Strand = Plus / Plus Query: 356 gcagaggatggccaggggccgcttcgtcctcgacggcaaagtataccatacctacctcaa 415 ||||||||| |||||||| || ||||| |||||||| || || || || || ||| |||| Sbjct: 339 gcagaggatagccagggggcggttcgttctcgacgggaaggtgtatcacacgtacatcaa 398 Query: 416 cgacggcaagaacgcaattcatggtggcaaaagggggttcagcaaggtgatatggacggt 475 |||||||| |||||| ||||| ||||| | || ||||||||||| || ||||||||||| Sbjct: 399 cgacggcaggaacgcgattcacggtggacacagagggttcagcaaagtcatatggacggt 458 Query: 476 gaaggagtacgccgccggcggcgactccccgtacatcaccatgtactaccgcagcttcga 535 ||||||||||| || |||||||||||| |||||||||||| ||||||||||||||||||| Sbjct: 459 gaaggagtacgtcggcggcggcgactcgccgtacatcaccttgtactaccgcagcttcga 518 Query: 536 cgg 538 ||| Sbjct: 519 cgg 521 Score = 131 bits (66), Expect = 3e-27 Identities = 138/162 (85%) Strand = Plus / Plus Query: 138 gcgctggccggcggcgccgacgcgaggaagatggtcggcgtgtacgagctcaagagaggc 197 ||||| ||||||||||||| |||||||||| |||||||| ||||| ||||| || || Sbjct: 124 gcgctcgccggcggcgccggtgcgaggaagacggtcggcgagtacgtgctcaggaagggg 183 Query: 198 gatttctccgtcaagatgaccaactggggcgccaccatcatgtccatcctcgtccctgat 257 || |||||||| ||||| ||||||||||| || ||||| ||||| || || |||||||| Sbjct: 184 gacttctccgtgaagatcaccaactggggagcaaccatgatgtcggtcgtcctccctgat 243 Query: 258 tccaaagggaatttggccgatgttgtgctgggcatggacacc 299 ||||||||||||||||| ||||||||||| ||| | |||||| Sbjct: 244 tccaaagggaatttggctgatgttgtgcttggcctagacacc 285
>emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21, complete sequence Length = 138969 Score = 129 bits (65), Expect = 1e-26 Identities = 83/89 (93%) Strand = Plus / Plus Query: 450 gggttcagcaaggtgatatggacggtgaaggagtacgccgccggcggcgactccccgtac 509 ||||||||||| || |||||||||||||||||||||| || |||||||||||| |||||| Sbjct: 88052 gggttcagcaaagtcatatggacggtgaaggagtacgtcggcggcggcgactcgccgtac 88111 Query: 510 atcaccatgtactaccgcagcttcgacgg 538 |||||| |||||||||||||||||||||| Sbjct: 88112 atcaccttgtactaccgcagcttcgacgg 88140 Score = 95.6 bits (48), Expect = 1e-16 Identities = 108/128 (84%) Strand = Plus / Plus Query: 138 gcgctggccggcggcgccgacgcgaggaagatggtcggcgtgtacgagctcaagagaggc 197 ||||| ||||||||||||| |||||||||| |||||||| ||||| ||||| || || Sbjct: 86131 gcgctcgccggcggcgccggtgcgaggaagacggtcggcgagtacgtgctcaggaagggg 86190 Query: 198 gatttctccgtcaagatgaccaactggggcgccaccatcatgtccatcctcgtccctgat 257 || |||||||| ||||| ||||||||||| || ||||| ||||| || || |||||||| Sbjct: 86191 gacttctccgtgaagatcaccaactggggagcaaccatgatgtcggtcgtcctccctgat 86250 Query: 258 tccaaagg 265 |||||||| Sbjct: 86251 tccaaagg 86258 Score = 58.0 bits (29), Expect = 3e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 356 gcagaggatggccaggggccgcttcgtcctcgacggcaaagtataccatacctacctcaa 415 ||||||||| |||||||| || ||||| |||||||| || || || || || ||| |||| Sbjct: 87873 gcagaggatagccagggggcggttcgttctcgacgggaaggtgtatcacacgtacatcaa 87932 Query: 416 cgacggcaagaacgcaattca 436 |||||||| |||||| ||||| Sbjct: 87933 cgacggcaggaacgcgattca 87953 Score = 42.1 bits (21), Expect = 1.8 Identities = 33/37 (89%) Strand = Plus / Plus Query: 263 agggaatttggccgatgttgtgctgggcatggacacc 299 |||||||||||| ||||||||||| ||| | |||||| Sbjct: 86351 agggaatttggctgatgttgtgcttggcctagacacc 86387
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 129 bits (65), Expect = 1e-26 Identities = 83/89 (93%) Strand = Plus / Plus Query: 450 gggttcagcaaggtgatatggacggtgaaggagtacgccgccggcggcgactccccgtac 509 ||||||||||| || |||||||||||||||||||||| || |||||||||||| |||||| Sbjct: 22879277 gggttcagcaaagtcatatggacggtgaaggagtacgtcggcggcggcgactcgccgtac 22879336 Query: 510 atcaccatgtactaccgcagcttcgacgg 538 |||||| |||||||||||||||||||||| Sbjct: 22879337 atcaccttgtactaccgcagcttcgacgg 22879365 Score = 95.6 bits (48), Expect = 1e-16 Identities = 108/128 (84%) Strand = Plus / Plus Query: 138 gcgctggccggcggcgccgacgcgaggaagatggtcggcgtgtacgagctcaagagaggc 197 ||||| ||||||||||||| |||||||||| |||||||| ||||| ||||| || || Sbjct: 22877356 gcgctcgccggcggcgccggtgcgaggaagacggtcggcgagtacgtgctcaggaagggg 22877415 Query: 198 gatttctccgtcaagatgaccaactggggcgccaccatcatgtccatcctcgtccctgat 257 || |||||||| ||||| ||||||||||| || ||||| ||||| || || |||||||| Sbjct: 22877416 gacttctccgtgaagatcaccaactggggagcaaccatgatgtcggtcgtcctccctgat 22877475 Query: 258 tccaaagg 265 |||||||| Sbjct: 22877476 tccaaagg 22877483 Score = 58.0 bits (29), Expect = 3e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 356 gcagaggatggccaggggccgcttcgtcctcgacggcaaagtataccatacctacctcaa 415 ||||||||| |||||||| || ||||| |||||||| || || || || || ||| |||| Sbjct: 22879098 gcagaggatagccagggggcggttcgttctcgacgggaaggtgtatcacacgtacatcaa 22879157 Query: 416 cgacggcaagaacgcaattca 436 |||||||| |||||| ||||| Sbjct: 22879158 cgacggcaggaacgcgattca 22879178 Score = 42.1 bits (21), Expect = 1.8 Identities = 33/37 (89%) Strand = Plus / Plus Query: 263 agggaatttggccgatgttgtgctgggcatggacacc 299 |||||||||||| ||||||||||| ||| | |||||| Sbjct: 22877576 agggaatttggctgatgttgtgcttggcctagacacc 22877612
>ref|XM_466392.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1299 Score = 99.6 bits (50), Expect = 9e-18 Identities = 77/86 (89%) Strand = Plus / Plus Query: 453 ttcagcaaggtgatatggacggtgaaggagtacgccgccggcggcgactccccgtacatc 512 ||||||||||| |||||||||||||||||| ||| ||||||||||||||| ||| |||| Sbjct: 420 ttcagcaaggtcatatggacggtgaaggagcacgtcgccggcggcgactcgccgcgcatc 479 Query: 513 accatgtactaccgcagcttcgacgg 538 || ||||||||| |||||||||||| Sbjct: 480 acgctgtactaccacagcttcgacgg 505 Score = 50.1 bits (25), Expect = 0.008 Identities = 67/81 (82%) Strand = Plus / Plus Query: 161 gaggaagatggtcggcgtgtacgagctcaagagaggcgatttctccgtcaagatgaccaa 220 |||||||||||| || ||||| ||||| |||| || ||||||||| ||| | | ||||| Sbjct: 128 gaggaagatggttggggtgtatgagctgaagaagggggatttctccatcagggtcaccaa 187 Query: 221 ctggggcgccaccatcatgtc 241 |||||| || || |||||||| Sbjct: 188 ctggggagctactatcatgtc 208
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 99.6 bits (50), Expect = 9e-18 Identities = 77/86 (89%) Strand = Plus / Plus Query: 453 ttcagcaaggtgatatggacggtgaaggagtacgccgccggcggcgactccccgtacatc 512 ||||||||||| |||||||||||||||||| ||| ||||||||||||||| ||| |||| Sbjct: 22122824 ttcagcaaggtcatatggacggtgaaggagcacgtcgccggcggcgactcgccgcgcatc 22122883 Query: 513 accatgtactaccgcagcttcgacgg 538 || ||||||||| |||||||||||| Sbjct: 22122884 acgctgtactaccacagcttcgacgg 22122909 Score = 50.1 bits (25), Expect = 0.008 Identities = 67/81 (82%) Strand = Plus / Plus Query: 161 gaggaagatggtcggcgtgtacgagctcaagagaggcgatttctccgtcaagatgaccaa 220 |||||||||||| || ||||| ||||| |||| || ||||||||| ||| | | ||||| Sbjct: 22122008 gaggaagatggttggggtgtatgagctgaagaagggggatttctccatcagggtcaccaa 22122067 Query: 221 ctggggcgccaccatcatgtc 241 |||||| || || |||||||| Sbjct: 22122068 ctggggagctactatcatgtc 22122088 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 479 ggagtacgccgccggcggcga 499 ||||||||||||||||||||| Sbjct: 20770141 ggagtacgccgccggcggcga 20770121
>dbj|AP005116.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0703B01 Length = 137445 Score = 99.6 bits (50), Expect = 9e-18 Identities = 77/86 (89%) Strand = Plus / Plus Query: 453 ttcagcaaggtgatatggacggtgaaggagtacgccgccggcggcgactccccgtacatc 512 ||||||||||| |||||||||||||||||| ||| ||||||||||||||| ||| |||| Sbjct: 96723 ttcagcaaggtcatatggacggtgaaggagcacgtcgccggcggcgactcgccgcgcatc 96782 Query: 513 accatgtactaccgcagcttcgacgg 538 || ||||||||| |||||||||||| Sbjct: 96783 acgctgtactaccacagcttcgacgg 96808 Score = 50.1 bits (25), Expect = 0.008 Identities = 67/81 (82%) Strand = Plus / Plus Query: 161 gaggaagatggtcggcgtgtacgagctcaagagaggcgatttctccgtcaagatgaccaa 220 |||||||||||| || ||||| ||||| |||| || ||||||||| ||| | | ||||| Sbjct: 95907 gaggaagatggttggggtgtatgagctgaagaagggggatttctccatcagggtcaccaa 95966 Query: 221 ctggggcgccaccatcatgtc 241 |||||| || || |||||||| Sbjct: 95967 ctggggagctactatcatgtc 95987
>dbj|AP006070.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1342F01 Length = 153287 Score = 99.6 bits (50), Expect = 9e-18 Identities = 77/86 (89%) Strand = Plus / Plus Query: 453 ttcagcaaggtgatatggacggtgaaggagtacgccgccggcggcgactccccgtacatc 512 ||||||||||| |||||||||||||||||| ||| ||||||||||||||| ||| |||| Sbjct: 18668 ttcagcaaggtcatatggacggtgaaggagcacgtcgccggcggcgactcgccgcgcatc 18727 Query: 513 accatgtactaccgcagcttcgacgg 538 || ||||||||| |||||||||||| Sbjct: 18728 acgctgtactaccacagcttcgacgg 18753 Score = 50.1 bits (25), Expect = 0.008 Identities = 67/81 (82%) Strand = Plus / Plus Query: 161 gaggaagatggtcggcgtgtacgagctcaagagaggcgatttctccgtcaagatgaccaa 220 |||||||||||| || ||||| ||||| |||| || ||||||||| ||| | | ||||| Sbjct: 17852 gaggaagatggttggggtgtatgagctgaagaagggggatttctccatcagggtcaccaa 17911 Query: 221 ctggggcgccaccatcatgtc 241 |||||| || || |||||||| Sbjct: 17912 ctggggagctactatcatgtc 17932
>dbj|AK109600.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-E04, full insert sequence Length = 1324 Score = 99.6 bits (50), Expect = 9e-18 Identities = 77/86 (89%) Strand = Plus / Plus Query: 453 ttcagcaaggtgatatggacggtgaaggagtacgccgccggcggcgactccccgtacatc 512 ||||||||||| |||||||||||||||||| ||| ||||||||||||||| ||| |||| Sbjct: 420 ttcagcaaggtcatatggacggtgaaggagcacgtcgccggcggcgactcgccgcgcatc 479 Query: 513 accatgtactaccgcagcttcgacgg 538 || ||||||||| |||||||||||| Sbjct: 480 acgctgtactaccacagcttcgacgg 505 Score = 50.1 bits (25), Expect = 0.008 Identities = 67/81 (82%) Strand = Plus / Plus Query: 161 gaggaagatggtcggcgtgtacgagctcaagagaggcgatttctccgtcaagatgaccaa 220 |||||||||||| || ||||| ||||| |||| || ||||||||| ||| | | ||||| Sbjct: 128 gaggaagatggttggggtgtatgagctgaagaagggggatttctccatcagggtcaccaa 187 Query: 221 ctggggcgccaccatcatgtc 241 |||||| || || |||||||| Sbjct: 188 ctggggagctactatcatgtc 208
>gb|BT016428.1| Zea mays clone Contig261 mRNA sequence Length = 1373 Score = 95.6 bits (48), Expect = 1e-16 Identities = 111/132 (84%) Strand = Plus / Plus Query: 407 ctacctcaacgacggcaagaacgcaattcatggtggcaaaagggggttcagcaaggtgat 466 ||||| |||||||||||| ||| | | || |||||| | |||||||||||||||| | Sbjct: 338 ctaccgcaacgacggcaacaactcgctccacggtggccaccgggggttcagcaaggtcgt 397 Query: 467 atggacggtgaaggagtacgccgccggcggcgactccccgtacatcaccatgtactaccg 526 |||||||||||||||| ||| || |||||| ||||||||||||||||| | ||||||| Sbjct: 398 atggacggtgaaggagcacgtcggcggcggtgactccccgtacatcacgctctactacca 457 Query: 527 cagcttcgacgg 538 ||||||||||| Sbjct: 458 tagcttcgacgg 469 Score = 85.7 bits (43), Expect = 1e-13 Identities = 124/151 (82%) Strand = Plus / Plus Query: 160 cgaggaagatggtcggcgtgtacgagctcaagagaggcgatttctccgtcaagatgacca 219 |||||||||| |||||||| ||||||||| | || ||||||||||||||| | |||| Sbjct: 91 cgaggaagatagtcggcgttcacgagctcagggtgggggatttctccgtcaaggtcacca 150 Query: 220 actggggcgccaccatcatgtccatcctcgtccctgattccaaagggaatttggccgatg 279 ||||||| || || |||||||| || || |||| || ||||||||||| |||| ||| | Sbjct: 151 actggggggcgactctcatgtccgtcatcctccccgactccaaagggaacttgggcgacg 210 Query: 280 ttgtgctgggcatggacaccctcgctgaata 310 ||||||| ||| |||||| |||||||||| Sbjct: 211 ttgtgctcggctacgacaccgtcgctgaata 241
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 144 gccggcggcgccgacgcgaggaagatggtcggcgtgtacg 183 |||||||||||||| |||||||||| |||||||| ||||| Sbjct: 10046095 gccggcggcgccgatgcgaggaagacggtcggcgagtacg 10046056
>dbj|AP006050.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0021H05 Length = 159111 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 144 gccggcggcgccgacgcgaggaagatggtcggcgtgtacg 183 |||||||||||||| |||||||||| |||||||| ||||| Sbjct: 119660 gccggcggcgccgatgcgaggaagacggtcggcgagtacg 119621
>dbj|AP004791.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0491D10 Length = 162039 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 144 gccggcggcgccgacgcgaggaagatggtcggcgtgtacg 183 |||||||||||||| |||||||||| |||||||| ||||| Sbjct: 12461 gccggcggcgccgatgcgaggaagacggtcggcgagtacg 12422
>ref|XM_507177.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0070J06.25 mRNA Length = 2298 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 ggccggcggcgccgacgcgaggaag 167 ||||||||||||||||| ||||||| Sbjct: 100 ggccggcggcgccgacgggaggaag 124
>ref|XM_480935.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2298 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 ggccggcggcgccgacgcgaggaag 167 ||||||||||||||||| ||||||| Sbjct: 100 ggccggcggcgccgacgggaggaag 124
>ref|XM_466158.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1596 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 479 ggagtacgccgccggcggcga 499 ||||||||||||||||||||| Sbjct: 365 ggagtacgccgccggcggcga 385
>ref|XM_470761.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1375 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 accaactggggcgccaccatc 236 ||||||||||||||||||||| Sbjct: 216 accaactggggcgccaccatc 236
>gb|BT018217.1| Zea mays clone EL01N0561B09.c mRNA sequence Length = 1320 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 479 ggagtacgccgccggcggcga 499 ||||||||||||||||||||| Sbjct: 198 ggagtacgccgccggcggcga 218
>gb|AY722708.1| Zea mays clone SPK1 putative salt-inducible protein kinase mRNA, complete cds Length = 1095 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 479 ggagtacgccgccggcggcga 499 ||||||||||||||||||||| Sbjct: 231 ggagtacgccgccggcggcga 251
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 216 accaactggggcgccaccatc 236 ||||||||||||||||||||| Sbjct: 14940399 accaactggggcgccaccatc 14940379
>gb|AC084022.10| Oryza sativa chromosome 3 BAC OSJNBa0011H24 genomic sequence, complete sequence Length = 137184 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 accaactggggcgccaccatc 236 ||||||||||||||||||||| Sbjct: 102363 accaactggggcgccaccatc 102383
>emb|AL591791.1|SME591791 Sinorhizobium meliloti 1021 complete chromosome; segment 10/12 Length = 340900 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 126 ctcgcggcccttgcgctggccggcg 150 ||||||||||||||||||| ||||| Sbjct: 183722 ctcgcggcccttgcgctggtcggcg 183698
>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16 Length = 349497 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 128 cgcggcccttgcgctggccggcggc 152 ||||||||| ||||||||||||||| Sbjct: 108397 cgcggccctcgcgctggccggcggc 108373
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 ggccggcggcgccgacgcgaggaag 167 ||||||||||||||||| ||||||| Sbjct: 8754158 ggccggcggcgccgacgggaggaag 8754182
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 216 accaactggggcgccaccatc 236 ||||||||||||||||||||| Sbjct: 14934933 accaactggggcgccaccatc 14934913
>dbj|AP004690.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0437G01 Length = 147101 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 ggccggcggcgccgacgcgaggaag 167 ||||||||||||||||| ||||||| Sbjct: 31907 ggccggcggcgccgacgggaggaag 31931
>dbj|AP004775.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0451A10 Length = 137046 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 479 ggagtacgccgccggcggcga 499 ||||||||||||||||||||| Sbjct: 121247 ggagtacgccgccggcggcga 121227
>dbj|AB125307.1| Oryza sativa (japonica cultivar-group) SAPK6 mRNA for serine/threonine protein kinase SAPK6, complete cds Length = 1508 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 479 ggagtacgccgccggcggcga 499 ||||||||||||||||||||| Sbjct: 331 ggagtacgccgccggcggcga 351
>dbj|AP004038.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_H01 Length = 121377 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 479 ggagtacgccgccggcggcga 499 ||||||||||||||||||||| Sbjct: 12602 ggagtacgccgccggcggcga 12582
>dbj|AP005478.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0070J06 Length = 142303 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 ggccggcggcgccgacgcgaggaag 167 ||||||||||||||||| ||||||| Sbjct: 97137 ggccggcggcgccgacgggaggaag 97161
>dbj|AK099083.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001A08, full insert sequence Length = 2298 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 ggccggcggcgccgacgcgaggaag 167 ||||||||||||||||| ||||||| Sbjct: 100 ggccggcggcgccgacgggaggaag 124
>dbj|AK069332.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010L17, full insert sequence Length = 1375 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 accaactggggcgccaccatc 236 ||||||||||||||||||||| Sbjct: 216 accaactggggcgccaccatc 236
>dbj|AK068915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001C12, full insert sequence Length = 2298 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 ggccggcggcgccgacgcgaggaag 167 ||||||||||||||||| ||||||| Sbjct: 100 ggccggcggcgccgacgggaggaag 124
>dbj|AK067395.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013105K04, full insert sequence Length = 1594 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 479 ggagtacgccgccggcggcga 499 ||||||||||||||||||||| Sbjct: 363 ggagtacgccgccggcggcga 383
>gb|AY110655.1| Zea mays CL9117_1 mRNA sequence Length = 1124 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 217 ccaactggggcgccaccatca 237 ||||||||||||||||||||| Sbjct: 1077 ccaactggggcgccaccatca 1057
>gb|AY104811.1| Zea mays PCO075814 mRNA sequence Length = 1579 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 479 ggagtacgccgccggcggcga 499 ||||||||||||||||||||| Sbjct: 383 ggagtacgccgccggcggcga 403
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 153 gccgacgcgaggaagatggtcggcg 177 |||||||||| |||||||||||||| Sbjct: 345057 gccgacgcgatgaagatggtcggcg 345033
>gb|AC154991.1| Homo sapiens chromosome 9 clone WI2-3450G22, complete sequence Length = 16638 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 462 gtgatatggacggtgaagga 481 |||||||||||||||||||| Sbjct: 7522 gtgatatggacggtgaagga 7541
>ref|XM_472738.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1206 Score = 40.1 bits (20), Expect = 7.3 Identities = 116/148 (78%) Strand = Plus / Plus Query: 170 ggtcggcgtgtacgagctcaagagaggcgatttctccgtcaagatgaccaactggggcgc 229 ||||||||| || ||||||| || || ||||||||| ||| | | ||||| ||||| || Sbjct: 102 ggtcggcgtctatgagctcaggaagggagatttctccatcagggtcaccaattggggagc 161 Query: 230 caccatcatgtccatcctcgtccctgattccaaagggaatttggccgatgttgtgctggg 289 |||||||||| || | | ||||| |||| |||||| |||| ||||||||| || || Sbjct: 162 ggtcatcatgtccgtcgtgcttcctgactccagagggaaattggacgatgttgttcttgg 221 Query: 290 catggacaccctcgctgaatatgttaat 317 |||||| | ||||||||||||||| Sbjct: 222 atatgacaccattgctgaatatgttaat 249
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 ccaaagggaatttggccgat 278 |||||||||||||||||||| Sbjct: 1786890 ccaaagggaatttggccgat 1786909
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 ctcgtccctgattccaaagg 265 |||||||||||||||||||| Sbjct: 3234770 ctcgtccctgattccaaagg 3234789
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 ctcgtccctgattccaaagg 265 |||||||||||||||||||| Sbjct: 746390 ctcgtccctgattccaaagg 746371
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 ttgcgctggccggcggcgccgacg 159 |||||||||||||||||| ||||| Sbjct: 1534305 ttgcgctggccggcggcgacgacg 1534282
>emb|AL773545.13| Human DNA sequence from clone RP11-216M21 on chromosome 9 Contains three novel pseudogenes, a pseudogene similar to part of meprin A, alpha (PABA peptide hydrolase) (MEP1A), a pseudogene similar to part of G protein-coupled receptor 116 (GPR116), two novel genes, the 5' end of a novel gene similar to ankyrin repeat domain 20A (ANKRD20A) and three CpG islands, complete sequence Length = 165886 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 462 gtgatatggacggtgaagga 481 |||||||||||||||||||| Sbjct: 73134 gtgatatggacggtgaagga 73115
>emb|AL591479.3| Human DNA sequence from clone RP11-154P18 on chromosome 9 Contains two novel pseudogene, a CDRT15 protein pseudogene, a pseudogene similar to part of meprin A, alpha (PABA peptide hydrolase) (MEP1A) and two CpG islands, complete sequence Length = 178933 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 462 gtgatatggacggtgaagga 481 |||||||||||||||||||| Sbjct: 126166 gtgatatggacggtgaagga 126147
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gcgctggccggcggcgccga 157 |||||||||||||||||||| Sbjct: 4119755 gcgctggccggcggcgccga 4119774
>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16 Length = 347137 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gcgctggccggcggcgccga 157 |||||||||||||||||||| Sbjct: 125363 gcgctggccggcggcgccga 125382
>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16 Length = 346274 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 gcgctggccggcggcgccga 157 |||||||||||||||||||| Sbjct: 243221 gcgctggccggcggcgccga 243202
>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14 Length = 349305 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gcgctggccggcggcgccga 157 |||||||||||||||||||| Sbjct: 61855 gcgctggccggcggcgccga 61874
>emb|BX640429.1| Bordetella parapertussis strain 12822, complete genome; segment 7/14 Length = 344321 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 gcgctggccggcggcgccga 157 |||||||||||||||||||| Sbjct: 42110 gcgctggccggcggcgccga 42091
>emb|BX640418.1| Bordetella pertussis strain Tohama I, complete genome; segment 8/12 Length = 349346 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gcgctggccggcggcgccga 157 |||||||||||||||||||| Sbjct: 127473 gcgctggccggcggcgccga 127492
>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12 Length = 349354 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 gcgctggccggcggcgccga 157 |||||||||||||||||||| Sbjct: 120206 gcgctggccggcggcgccga 120187
>emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genome; segment 11/16 Length = 349635 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gcctcgcggcccttgcgctg 143 |||||||||||||||||||| Sbjct: 138197 gcctcgcggcccttgcgctg 138178
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 ctcgtccctgattccaaagg 265 |||||||||||||||||||| Sbjct: 555035 ctcgtccctgattccaaagg 555016
>emb|BX248505.8| Zebrafish DNA sequence from clone CH211-87L2 in linkage group 14, complete sequence Length = 189425 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 ggcaaaagggggttcagcaa 460 |||||||||||||||||||| Sbjct: 167926 ggcaaaagggggttcagcaa 167907
>gb|AF118548.1| Brucella melitensis biovar Abortus insertion sequence IS2020 putative transposase (tpnA), transposon Tn2020 hypothetical proteins, and insertion sequence IS2020 putative transposase (tnpA) genes, complete cds; and truncated IS2020-like sequence tIS2020A, complete sequence Length = 6002 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 ccaaagggaatttggccgat 278 |||||||||||||||||||| Sbjct: 5327 ccaaagggaatttggccgat 5346
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 tggccggcggcgccgacgcg 161 |||||||||||||||||||| Sbjct: 4117767 tggccggcggcgccgacgcg 4117786
>emb|BX255919.15| Zebrafish DNA sequence from clone DKEY-259P11 in linkage group 8, complete sequence Length = 168607 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 ggcaaaagggggttcagcaa 460 |||||||||||||||||||| Sbjct: 134778 ggcaaaagggggttcagcaa 134759
>gb|AF318950.1| Actinidia chinensis sucrose phosphate synthase (SPS3) mRNA, partial cds Length = 2198 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 aaggtgatatggacggtgaa 478 |||||||||||||||||||| Sbjct: 134 aaggtgatatggacggtgaa 153
>gb|AF318949.1| Actinidia chinensis sucrose phosphate synthase (SPS2) mRNA, complete cds Length = 3627 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 aaggtgatatggacggtgaa 478 |||||||||||||||||||| Sbjct: 1401 aaggtgatatggacggtgaa 1420
>gb|AF318948.1| Actinidia chinensis sucrose phosphate synthase (SPS1) mRNA, partial cds Length = 2064 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 aaggtgatatggacggtgaa 478 |||||||||||||||||||| Sbjct: 41 aaggtgatatggacggtgaa 60
>gb|AF326688.1|AF326688 Burkholderia pseudomallei RNA polymerase sigma-32 factor (rpoD) gene, complete cds; and cytochrome D ubiquinol oxidase subunit I gene, partial cds Length = 2682 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 ctcgtccctgattccaaagg 265 |||||||||||||||||||| Sbjct: 508 ctcgtccctgattccaaagg 527
>gb|AE009463.1| Brucella melitensis 16M chromosome I, section 20 of 195 of the complete sequence Length = 12889 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 ccaaagggaatttggccgat 278 |||||||||||||||||||| Sbjct: 2360 ccaaagggaatttggccgat 2341
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 ccaaagggaatttggccgat 278 |||||||||||||||||||| Sbjct: 1803750 ccaaagggaatttggccgat 1803769
>emb|AL355000.11| Human DNA sequence from clone RP11-78N10 on chromosome 22, complete sequence Length = 219376 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 462 gtgatatggacggtgaagga 481 |||||||||||||||||||| Sbjct: 79653 gtgatatggacggtgaagga 79634
>dbj|AK104444.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-H06, full insert sequence Length = 1285 Score = 40.1 bits (20), Expect = 7.3 Identities = 116/148 (78%) Strand = Plus / Plus Query: 170 ggtcggcgtgtacgagctcaagagaggcgatttctccgtcaagatgaccaactggggcgc 229 ||||||||| || ||||||| || || ||||||||| ||| | | ||||| ||||| || Sbjct: 131 ggtcggcgtctatgagctcaggaagggagatttctccatcagggtcaccaattggggagc 190 Query: 230 caccatcatgtccatcctcgtccctgattccaaagggaatttggccgatgttgtgctggg 289 |||||||||| || | | ||||| |||| |||||| |||| ||||||||| || || Sbjct: 191 ggtcatcatgtccgtcgtgcttcctgactccagagggaaattggacgatgttgttcttgg 250 Query: 290 catggacaccctcgctgaatatgttaat 317 |||||| | ||||||||||||||| Sbjct: 251 atatgacaccattgctgaatatgttaat 278
>dbj|AK059553.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G05, full insert sequence Length = 1329 Score = 40.1 bits (20), Expect = 7.3 Identities = 116/148 (78%) Strand = Plus / Plus Query: 170 ggtcggcgtgtacgagctcaagagaggcgatttctccgtcaagatgaccaactggggcgc 229 ||||||||| || ||||||| || || ||||||||| ||| | | ||||| ||||| || Sbjct: 155 ggtcggcgtctatgagctcaggaagggagatttctccatcagggtcaccaattggggagc 214 Query: 230 caccatcatgtccatcctcgtccctgattccaaagggaatttggccgatgttgtgctggg 289 |||||||||| || | | ||||| |||| |||||| |||| ||||||||| || || Sbjct: 215 ggtcatcatgtccgtcgtgcttcctgactccagagggaaattggacgatgttgttcttgg 274 Query: 290 catggacaccctcgctgaatatgttaat 317 |||||| | ||||||||||||||| Sbjct: 275 atatgacaccattgctgaatatgttaat 302
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gcgctggccggcggcgccga 157 |||||||||||||||||||| Sbjct: 2271619 gcgctggccggcggcgccga 2271638
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 cctcgcggcccttgcgctgg 144 |||||||||||||||||||| Sbjct: 3009495 cctcgcggcccttgcgctgg 3009514
>gb|U85449.1|ADU85449 Actinidia deliciosa sucrose-phosphate synthase (KSPS-2) mRNA, partial cds Length = 1830 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 aaggtgatatggacggtgaa 478 |||||||||||||||||||| Sbjct: 1418 aaggtgatatggacggtgaa 1437
>gb|U85448.1|ADU85448 Actinidia deliciosa sucrose-phosphate synthase (KSPS-1) mRNA, partial cds Length = 2584 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 aaggtgatatggacggtgaa 478 |||||||||||||||||||| Sbjct: 476 aaggtgatatggacggtgaa 495
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 ccaaagggaatttggccgat 278 |||||||||||||||||||| Sbjct: 1800878 ccaaagggaatttggccgat 1800897
>emb|AL591952.9| Mouse DNA sequence from clone RP23-25N17 on chromosome 15, complete sequence Length = 208835 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 aggatggccaggggccgctt 379 |||||||||||||||||||| Sbjct: 118582 aggatggccaggggccgctt 118563 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,062,988 Number of Sequences: 3902068 Number of extensions: 4062988 Number of successful extensions: 84965 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 83471 Number of HSP's gapped (non-prelim): 1496 length of query: 538 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 515 effective length of database: 17,143,297,704 effective search space: 8828798317560 effective search space used: 8828798317560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)