Clone Name | bart45f05 |
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Clone Library Name | barley_pub |
>UMP6_ARATH (Q9SX77) Unknown protein At1g47420, mitochondrial precursor| Length = 257 Score = 107 bits (268), Expect = 2e-23 Identities = 50/88 (56%), Positives = 66/88 (75%) Frame = +2 Query: 278 RMFSSNEKHLPPISDPKIETAFKDLMAASWNELPGSLVEEAKKEVSKATDDKAGQEALEN 457 R FS + H+P + D + AFKDLMAA W ELP ++V++AK +SK TDDKAGQEAL+N Sbjct: 87 RRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQEALKN 146 Query: 458 VFRAAEACEEFSGVLVTLRMALDDLCGL 541 VFRAAEA EEF G+L +++M +DD G+ Sbjct: 147 VFRAAEAVEEFGGILTSIKMEIDDSIGM 174
>PHO1_ARATH (Q8S403) Putative phosphate transporter 1| Length = 782 Score = 33.5 bits (75), Expect = 0.40 Identities = 19/69 (27%), Positives = 31/69 (44%) Frame = +3 Query: 294 MRNICLQYLTRKLRLHLRI*WLPAGMSFRVXXXXXXXXXXXXXXMIRLVKKLWKMYFVQL 473 +RN YL+ L L LR+ W+ M FRV + + + W Y V+ Sbjct: 697 LRNKNFYYLSIALNLVLRVAWIETIMRFRVSPVQSHLLDFFLASLEVIRRGHWNFYRVEN 756 Query: 474 KHVKNLVEF 500 +H+ N+ +F Sbjct: 757 EHLNNVGQF 765
>VHP1_CAEEL (Q10038) Tyrosine-protein phosphatase vhp-1 (EC 3.1.3.48) (Vh1 dual| specificity phosphatase family protein 1) Length = 657 Score = 30.0 bits (66), Expect = 4.4 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 3/79 (3%) Frame = -3 Query: 528 SSRAILRVTKTPLNSSHASAARNT---FSKAS*PALSSVALDTSFFASSTREPGSSFQLA 358 SSR ++ TP SS +S + FS + SS+ ++ FFAS+ GSS Sbjct: 489 SSREVILTLPTPAASSSSSTSSEPSFDFSSFESSSSSSIVVENPFFASTEVPAGSSSIST 548 Query: 357 AIKSLNAVSIFGSDIGGRC 301 S + + S RC Sbjct: 549 PSGSQSTPASASSSAASRC 567
>GDA2_WHEAT (P04722) Alpha/beta-gliadin A-II precursor (Prolamin)| Length = 291 Score = 30.0 bits (66), Expect = 4.4 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%) Frame = -1 Query: 497 LH*ILHMLQLHEIHF--PKLLDQPYHQXXXXXXXXLPQQENPEAHSSWQPS--NP*MQSQ 330 +H ++H + LH+ H + Q Q PQQ+ P +QPS NP Q Sbjct: 189 IHNVVHAIILHQQHHHHQQQQQQQQQQPLSQVSFQQPQQQYPSGQGFFQPSQQNPQAQGS 248 Query: 329 FSGQIL 312 F Q L Sbjct: 249 FQPQQL 254
>ATR_YEAST (P38111) Serine/threonine-protein kinase MEC1 (EC 2.7.11.1)| (DNA-damage checkpoint kinase MEC1) (Mitosis entry checkpoint protein 1) (ATR homolog) Length = 2368 Score = 30.0 bits (66), Expect = 4.4 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 2/47 (4%) Frame = +2 Query: 323 PKIETAFKDLMAASWNELPGSLVEEAKKEVSKATDDKAG--QEALEN 457 PK+ T + D+ AAS +E PG+ K+ +SKAT+D +EAL++ Sbjct: 1849 PKVITFWLDIAAASISEAPGN----RKEMLSKATEDICSHVEEALQH 1891
>GPA8_DICDI (P34046) Guanine nucleotide-binding protein alpha-8 subunit (G| alpha-8) Length = 403 Score = 29.3 bits (64), Expect = 7.5 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +2 Query: 311 PISDPKIETAFKDLMAASWNELPGSLVEEAKKEVSKATDD 430 P+ I +K + +W E G L+EE KK + KAT D Sbjct: 316 PLHTFHIAARYKKDIKYTWEEAKGILLEENKKVLMKATKD 355
>GDA9_WHEAT (P18573) Alpha/beta-gliadin MM1 precursor (Prolamin)| Length = 307 Score = 28.9 bits (63), Expect = 9.7 Identities = 18/60 (30%), Positives = 27/60 (45%) Frame = -1 Query: 497 LH*ILHMLQLHEIHFPKLLDQPYHQXXXXXXXXLPQQENPEAHSSWQPSNP*MQSQFSGQ 318 +H ++H + LH+ + Q Q PQQ+ P S+QPS Q+Q S Q Sbjct: 209 IHNVVHAIILHQQQQQQ--QQQQQQPLSQVSFQQPQQQYPSGQGSFQPSQQNPQAQGSVQ 266 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,998,477 Number of Sequences: 219361 Number of extensions: 878420 Number of successful extensions: 2959 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 2911 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2959 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4315578075 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)