ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart45e07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 107 bits (54), Expect = 3e-20 Identities = 69/74 (93%) Strand = Plus / Plus Query: 364 ccccatcaagaacgtccagaagaggctcgacgcgcgcgccgatgccaaggcctgggcctg 423 |||||||||||||||| ||||| |||| |||||||||||||| |||||||| |||||||| Sbjct: 11021950 ccccatcaagaacgtcaagaagcggcttgacgcgcgcgccgaggccaaggcgtgggcctg 11022009 Query: 424 caccgtcaccgagg 437 |||||||||||||| Sbjct: 11022010 caccgtcaccgagg 11022023 Score = 60.0 bits (30), Expect = 6e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 92 cgccgccgccactggaaggccggcgagttcccattccccacc 133 ||||| ||||||||||||||||| |||||||| ||||||||| Sbjct: 11021750 cgccgtcgccactggaaggccggtgagttccccttccccacc 11021791
>gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, complete sequence Length = 167588 Score = 107 bits (54), Expect = 3e-20 Identities = 69/74 (93%) Strand = Plus / Minus Query: 364 ccccatcaagaacgtccagaagaggctcgacgcgcgcgccgatgccaaggcctgggcctg 423 |||||||||||||||| ||||| |||| |||||||||||||| |||||||| |||||||| Sbjct: 111172 ccccatcaagaacgtcaagaagcggcttgacgcgcgcgccgaggccaaggcgtgggcctg 111113 Query: 424 caccgtcaccgagg 437 |||||||||||||| Sbjct: 111112 caccgtcaccgagg 111099 Score = 60.0 bits (30), Expect = 6e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 92 cgccgccgccactggaaggccggcgagttcccattccccacc 133 ||||| ||||||||||||||||| |||||||| ||||||||| Sbjct: 111372 cgccgtcgccactggaaggccggtgagttccccttccccacc 111331
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 107 bits (54), Expect = 3e-20 Identities = 69/74 (93%) Strand = Plus / Plus Query: 364 ccccatcaagaacgtccagaagaggctcgacgcgcgcgccgatgccaaggcctgggcctg 423 |||||||||||||||| ||||| |||| |||||||||||||| |||||||| |||||||| Sbjct: 11018713 ccccatcaagaacgtcaagaagcggcttgacgcgcgcgccgaggccaaggcgtgggcctg 11018772 Query: 424 caccgtcaccgagg 437 |||||||||||||| Sbjct: 11018773 caccgtcaccgagg 11018786 Score = 60.0 bits (30), Expect = 6e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 92 cgccgccgccactggaaggccggcgagttcccattccccacc 133 ||||| ||||||||||||||||| |||||||| ||||||||| Sbjct: 11018513 cgccgtcgccactggaaggccggtgagttccccttccccacc 11018554
>dbj|AK111624.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108I11, full insert sequence Length = 3398 Score = 107 bits (54), Expect = 3e-20 Identities = 69/74 (93%) Strand = Plus / Plus Query: 364 ccccatcaagaacgtccagaagaggctcgacgcgcgcgccgatgccaaggcctgggcctg 423 |||||||||||||||| ||||| |||| |||||||||||||| |||||||| |||||||| Sbjct: 311 ccccatcaagaacgtcaagaagcggcttgacgcgcgcgccgaggccaaggcgtgggcctg 370 Query: 424 caccgtcaccgagg 437 |||||||||||||| Sbjct: 371 caccgtcaccgagg 384 Score = 60.0 bits (30), Expect = 6e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 92 cgccgccgccactggaaggccggcgagttcccattccccacc 133 ||||| ||||||||||||||||| |||||||| ||||||||| Sbjct: 111 cgccgtcgccactggaaggccggtgagttccccttccccacc 152
>dbj|AK111530.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013024C10, full insert sequence Length = 2335 Score = 107 bits (54), Expect = 3e-20 Identities = 69/74 (93%) Strand = Plus / Plus Query: 364 ccccatcaagaacgtccagaagaggctcgacgcgcgcgccgatgccaaggcctgggcctg 423 |||||||||||||||| ||||| |||| |||||||||||||| |||||||| |||||||| Sbjct: 307 ccccatcaagaacgtcaagaagcggcttgacgcgcgcgccgaggccaaggcgtgggcctg 366 Query: 424 caccgtcaccgagg 437 |||||||||||||| Sbjct: 367 caccgtcaccgagg 380 Score = 60.0 bits (30), Expect = 6e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 92 cgccgccgccactggaaggccggcgagttcccattccccacc 133 ||||| ||||||||||||||||| |||||||| ||||||||| Sbjct: 107 cgccgtcgccactggaaggccggtgagttccccttccccacc 148
>dbj|AK106141.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-G09, full insert sequence Length = 1786 Score = 107 bits (54), Expect = 3e-20 Identities = 69/74 (93%) Strand = Plus / Plus Query: 364 ccccatcaagaacgtccagaagaggctcgacgcgcgcgccgatgccaaggcctgggcctg 423 |||||||||||||||| ||||| |||| |||||||||||||| |||||||| |||||||| Sbjct: 330 ccccatcaagaacgtcaagaagcggcttgacgcgcgcgccgaggccaaggcgtgggcctg 389 Query: 424 caccgtcaccgagg 437 |||||||||||||| Sbjct: 390 caccgtcaccgagg 403 Score = 60.0 bits (30), Expect = 6e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 92 cgccgccgccactggaaggccggcgagttcccattccccacc 133 ||||| ||||||||||||||||| |||||||| ||||||||| Sbjct: 130 cgccgtcgccactggaaggccggtgagttccccttccccacc 171
>dbj|AK060922.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-H05, full insert sequence Length = 1786 Score = 107 bits (54), Expect = 3e-20 Identities = 69/74 (93%) Strand = Plus / Plus Query: 364 ccccatcaagaacgtccagaagaggctcgacgcgcgcgccgatgccaaggcctgggcctg 423 |||||||||||||||| ||||| |||| |||||||||||||| |||||||| |||||||| Sbjct: 330 ccccatcaagaacgtcaagaagcggcttgacgcgcgcgccgaggccaaggcgtgggcctg 389 Query: 424 caccgtcaccgagg 437 |||||||||||||| Sbjct: 390 caccgtcaccgagg 403 Score = 60.0 bits (30), Expect = 6e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 92 cgccgccgccactggaaggccggcgagttcccattccccacc 133 ||||| ||||||||||||||||| |||||||| ||||||||| Sbjct: 130 cgccgtcgccactggaaggccggtgagttccccttccccacc 171
>gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042B10, from chromosome 3, complete sequence Length = 144205 Score = 107 bits (54), Expect = 3e-20 Identities = 69/74 (93%) Strand = Plus / Plus Query: 364 ccccatcaagaacgtccagaagaggctcgacgcgcgcgccgatgccaaggcctgggcctg 423 |||||||||||||||| ||||| |||| |||||||||||||| |||||||| |||||||| Sbjct: 65435 ccccatcaagaacgtcaagaagcggcttgacgcgcgcgccgaggccaaggcgtgggcctg 65494 Query: 424 caccgtcaccgagg 437 |||||||||||||| Sbjct: 65495 caccgtcaccgagg 65508 Score = 60.0 bits (30), Expect = 6e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 92 cgccgccgccactggaaggccggcgagttcccattccccacc 133 ||||| ||||||||||||||||| |||||||| ||||||||| Sbjct: 65235 cgccgtcgccactggaaggccggtgagttccccttccccacc 65276
>dbj|AK098942.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043D15, full insert sequence Length = 1730 Score = 91.7 bits (46), Expect = 2e-15 Identities = 68/74 (91%), Gaps = 1/74 (1%) Strand = Plus / Plus Query: 364 ccccatcaagaacgtccagaagaggctcgacgcgcgcgccgatgccaaggcctgggcctg 423 |||||||||||||||| ||||| |||| ||||||||||||| |||||||| |||||||| Sbjct: 311 ccccatcaagaacgtcaagaagcggcttgacgcgcgcgccg-ggccaaggcgtgggcctg 369 Query: 424 caccgtcaccgagg 437 |||||||||||||| Sbjct: 370 caccgtcaccgagg 383 Score = 60.0 bits (30), Expect = 6e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 92 cgccgccgccactggaaggccggcgagttcccattccccacc 133 ||||| ||||||||||||||||| |||||||| ||||||||| Sbjct: 111 cgccgtcgccactggaaggccggtgagttccccttccccacc 152
>gb|AY278988.1| Zea mays PPR2 (ppr2) gene, complete cds; nuclear gene for chloroplast product Length = 2781 Score = 73.8 bits (37), Expect = 4e-10 Identities = 61/69 (88%) Strand = Plus / Plus Query: 369 tcaagaacgtccagaagaggctcgacgcgcgcgccgatgccaaggcctgggcctgcaccg 428 ||||||||||| ||||| |||| ||||| ||||| || |||||||| ||||| ||||||| Sbjct: 1093 tcaagaacgtcaagaagcggctggacgcccgcgcggacgccaaggcgtgggcgtgcaccg 1152 Query: 429 tcaccgagg 437 ||||||||| Sbjct: 1153 tcaccgagg 1161 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 288 ggcactggaaggcgggggagttcccgg 314 ||||||||||||||||||||||||||| Sbjct: 871 ggcactggaaggcgggggagttcccgg 897 Score = 46.1 bits (23), Expect = 0.095 Identities = 23/23 (100%) Strand = Plus / Plus Query: 101 cactggaaggccggcgagttccc 123 ||||||||||||||||||||||| Sbjct: 1026 cactggaaggccggcgagttccc 1048
>ref|XM_656999.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN4487.2), mRNA Length = 2358 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 127 ccccaccacctccccctcctcc 148 |||||||||||||||||||||| Sbjct: 2323 ccccaccacctccccctcctcc 2302
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 392 gacgcgcgcgccgatgccaagg 413 |||||||||||||||||||||| Sbjct: 3980726 gacgcgcgcgccgatgccaagg 3980747
>gb|AE011982.1| Xanthomonas axonopodis pv. citri str. 306, section 360 of 469 of the complete genome Length = 13732 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 392 gacgcgcgcgccgatgccaagg 413 |||||||||||||||||||||| Sbjct: 3251 gacgcgcgcgccgatgccaagg 3272
>ref|XM_515920.1| PREDICTED: Pan troglodytes similar to secernin 3 (LOC459753), mRNA Length = 4101 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 gcgtccgcccccacctccacc 204 ||||||||||||||||||||| Sbjct: 200 gcgtccgcccccacctccacc 180
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 389 ctcgacgcgcgcgccgatgcc 409 ||||||||||||||||||||| Sbjct: 1203040 ctcgacgcgcgcgccgatgcc 1203020
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 ctcgacgcgcgcgccgatgcc 409 ||||||||||||||||||||| Sbjct: 2313034 ctcgacgcgcgcgccgatgcc 2313054
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 389 ctcgacgcgcgcgccgatgcc 409 ||||||||||||||||||||| Sbjct: 2072057 ctcgacgcgcgcgccgatgcc 2072037
>emb|BX510348.6| Zebrafish DNA sequence from clone CH211-157E20 in linkage group 6, complete sequence Length = 169275 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 124 attccccaccacctccccctcctcc 148 |||||||| |||||||||||||||| Sbjct: 138358 attccccatcacctccccctcctcc 138334
>gb|AC018470.11| Homo sapiens BAC clone RP11-572N21 from 2, complete sequence Length = 174437 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 gcgtccgcccccacctccacc 204 ||||||||||||||||||||| Sbjct: 29571 gcgtccgcccccacctccacc 29551
>gb|AC068138.6| Homo sapiens BAC clone RP11-813K12 from 2, complete sequence Length = 168698 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 125 ttccccaccacctccccctcctccg 149 ||||||||||||| ||||||||||| Sbjct: 119013 ttccccaccacctgcccctcctccg 118989
>emb|Z55951.1|HS75D1R H.sapiens CpG island DNA genomic Mse1 fragment, clone 75d1, reverse read cpg75d1.rt1a Length = 219 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 gcgtccgcccccacctccacc 204 ||||||||||||||||||||| Sbjct: 55 gcgtccgcccccacctccacc 35
>emb|Z55950.1|HS75D1F H.sapiens CpG island DNA genomic Mse1 fragment, clone 75d1, forward read cpg75d1.ft1a Length = 220 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 gcgtccgcccccacctccacc 204 ||||||||||||||||||||| Sbjct: 166 gcgtccgcccccacctccacc 186
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 20 gccggcgccgcgaacgccaccttcc 44 |||||||||||||| |||||||||| Sbjct: 2512160 gccggcgccgcgaaggccaccttcc 2512136
>gb|AC000113.1|HSAC000113 Human PAC clone DJ302C05 from Xq23, complete sequence Length = 135672 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 121 cccattccccaccacctcccc 141 ||||||||||||||||||||| Sbjct: 64027 cccattccccaccacctcccc 64007
>gb|AC167013.4| Mus musculus BAC clone RP23-262F9 from chromosome 14, complete sequence Length = 236791 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 117 agttcccattccccaccacct 137 ||||||||||||||||||||| Sbjct: 171157 agttcccattccccaccacct 171137
>gb|AC156790.2| Mus musculus BAC clone RP24-359N3 from chromosome 14, complete sequence Length = 233946 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 117 agttcccattccccaccacct 137 ||||||||||||||||||||| Sbjct: 28296 agttcccattccccaccacct 28276
>gb|AC164648.3| Mus musculus BAC clone RP23-434H4 from chromosome 18, complete sequence Length = 198430 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 tccccaccacctccccctcc 145 |||||||||||||||||||| Sbjct: 51316 tccccaccacctccccctcc 51335
>gb|AC134928.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1164G01, complete sequence Length = 151938 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 ccaccacctccccctcctccggca 152 ||||||||||| |||||||||||| Sbjct: 134864 ccaccacctcctcctcctccggca 134841
>gb|AC144742.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0052F16, complete sequence Length = 162082 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 ccaccacctccccctcctccggca 152 ||||||||||| |||||||||||| Sbjct: 78860 ccaccacctcctcctcctccggca 78837
>gb|AC102410.5| Mus musculus chromosome 18, clone RP24-369O1, complete sequence Length = 164142 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 tccccaccacctccccctcc 145 |||||||||||||||||||| Sbjct: 16864 tccccaccacctccccctcc 16845
>gb|AC161809.3| Mus musculus chromosome 1, clone RP23-114N13, complete sequence Length = 213778 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ccaccacctccccctcctcc 148 |||||||||||||||||||| Sbjct: 139620 ccaccacctccccctcctcc 139601
>gb|BC032160.1| Mus musculus R3H domain 1 (binds single-stranded nucleic acids), mRNA (cDNA clone IMAGE:5344087), with apparent retained intron Length = 3795 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ccaccacctccccctcctcc 148 |||||||||||||||||||| Sbjct: 1212 ccaccacctccccctcctcc 1231
>gb|BC075471.1| Xenopus tropicalis MGC89288 protein, mRNA (cDNA clone MGC:89288 IMAGE:6978847), complete cds Length = 1670 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 tccgcccccacctccaccgt 206 |||||||||||||||||||| Sbjct: 768 tccgcccccacctccaccgt 787
>ref|XM_953882.1| Neurospora crassa OR74A hypothetical protein (NCU09028.1) partial mRNA Length = 1713 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 210 agggggaagacccggaggggagagggcg 237 ||||| ||||||||||||||| |||||| Sbjct: 320 aggggtaagacccggaggggaaagggcg 293
>ref|XM_331419.1| Neurospora crassa OR74A hypothetical protein (NCU09028.1) partial mRNA Length = 1713 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 210 agggggaagacccggaggggagagggcg 237 ||||| ||||||||||||||| |||||| Sbjct: 320 aggggtaagacccggaggggaaagggcg 293
>ref|NG_005305.1| Homo sapiens sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3/GIY-YIG domain containing 1 region (SULT1A3/GIYD1@) on chromosome 16 Length = 152926 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 tccccaccacctccccctcctccg 149 ||||||||| |||||||||||||| Sbjct: 19399 tccccaccagctccccctcctccg 19376
>ref|NM_181750.2| Mus musculus R3H domain 1 (binds single-stranded nucleic acids) (R3hdm1), mRNA Length = 4812 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ccaccacctccccctcctcc 148 |||||||||||||||||||| Sbjct: 2321 ccaccacctccccctcctcc 2340
>ref|NM_145501.2| Mus musculus phosphatidylinositol 4-kinase type 2 alpha (Pi4k2a), mRNA Length = 3771 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 407 gccaaggcctgggcctgcaccgtcaccg 434 |||| ||||||||||||||||| ||||| Sbjct: 321 gccagggcctgggcctgcaccgccaccg 294
>gb|AC124602.5| Mus musculus BAC clone RP23-37L7 from chromosome 7, complete sequence Length = 189065 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ccaccacctccccctcctcc 148 |||||||||||||||||||| Sbjct: 31522 ccaccacctccccctcctcc 31541
>ref|XM_657363.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN4851.2), mRNA Length = 4227 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ccaccacctccccctcctcc 148 |||||||||||||||||||| Sbjct: 3662 ccaccacctccccctcctcc 3681
>gb|BC022127.1| Mus musculus phosphatidylinositol 4-kinase type 2 alpha, mRNA (cDNA clone MGC:37783 IMAGE:5097465), complete cds Length = 1960 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 407 gccaaggcctgggcctgcaccgtcaccg 434 |||| ||||||||||||||||| ||||| Sbjct: 293 gccagggcctgggcctgcaccgccaccg 266
>ref|XM_894035.2| PREDICTED: Mus musculus SET domain containing 1A (Setd1a), mRNA Length = 5934 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ccaccacctccccctcctcc 148 |||||||||||||||||||| Sbjct: 1998 ccaccacctccccctcctcc 2017
>gb|AC012645.7| Homo sapiens chromosome 16 clone RP11-455F5, complete sequence Length = 192943 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 tccccaccacctccccctcctccg 149 ||||||||| |||||||||||||| Sbjct: 139801 tccccaccagctccccctcctccg 139778
>emb|CT025209.2| Xenopus tropicalis finished cDNA, clone TEgg037h19 Length = 1614 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 tccgcccccacctccaccgt 206 |||||||||||||||||||| Sbjct: 721 tccgcccccacctccaccgt 740
>gb|AC133503.4| Mus musculus BAC clone RP24-301O19 from chromosome 19, complete sequence Length = 161150 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 407 gccaaggcctgggcctgcaccgtcaccg 434 |||| ||||||||||||||||| ||||| Sbjct: 57545 gccagggcctgggcctgcaccgccaccg 57572
>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12 Length = 286550 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 ccggcacgcagcagcgccgg 166 |||||||||||||||||||| Sbjct: 104164 ccggcacgcagcagcgccgg 104183
>gb|AC122422.4| Mus musculus BAC clone RP24-169N11 from chromosome 17, complete sequence Length = 181626 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ccaccacctccccctcctcc 148 |||||||||||||||||||| Sbjct: 163996 ccaccacctccccctcctcc 164015
>ref|XM_844542.1| PREDICTED: Canis familiaris similar to SUMO1/sentrin/SMT3 specific protease 3, transcript variant 1 (LOC607655), mRNA Length = 2423 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ccaccacctccccctcctcc 148 |||||||||||||||||||| Sbjct: 36 ccaccacctccccctcctcc 17
>gb|BC066039.1| Mus musculus cDNA clone IMAGE:6410110, **** WARNING: chimeric clone **** Length = 5233 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ccaccacctccccctcctcc 148 |||||||||||||||||||| Sbjct: 229 ccaccacctccccctcctcc 248
>gb|BC076555.1| Danio rerio hypothetical protein LOC563938, mRNA (cDNA clone IMAGE:7044154), partial cds Length = 3110 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ccaccacctccccctcctcc 148 |||||||||||||||||||| Sbjct: 322 ccaccacctccccctcctcc 341
>gb|AC106782.5| Homo sapiens chromosome 16 clone RP11-347C12, complete sequence Length = 181001 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 tccccaccacctccccctcctccg 149 ||||||||| |||||||||||||| Sbjct: 11473 tccccaccagctccccctcctccg 11450
>emb|Z82254.1|HSU46H11 Human DNA sequence from clone LL0XNC01-46H11 on chromosome X Contains the 3' end of the gene for a novel protein (LOC170242), a novel gene and a CpG island, complete sequence Length = 38540 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 caccacctccccctcctccg 149 |||||||||||||||||||| Sbjct: 33467 caccacctccccctcctccg 33486
>emb|Z70273.1|HSU116E7 Human DNA sequence from clone LL0XNC01-116E7 on chromosome X Contains an E74-like factor 2 (ELF2) pseudogene, a novel gene, the 5' end of a novel gene, a solute carrier family 25 (mitochondrial oxodicarboxylate carrier) member 21 (SLC25A21) pseudogene and a CpG island, complete sequence Length = 26674 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 caccacctccccctcctccg 149 |||||||||||||||||||| Sbjct: 19067 caccacctccccctcctccg 19048
>gb|BC110363.1| Mus musculus phosphatidylinositol 4-kinase type 2 alpha, mRNA (cDNA clone MGC:118011 IMAGE:5346917), complete cds Length = 3578 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 407 gccaaggcctgggcctgcaccgtcaccg 434 |||| ||||||||||||||||| ||||| Sbjct: 283 gccagggcctgggcctgcaccgccaccg 256
>emb|CR536620.6| Zebrafish DNA sequence from clone CH211-235C15 in linkage group 16, complete sequence Length = 57729 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ccaccacctccccctcctcc 148 |||||||||||||||||||| Sbjct: 21318 ccaccacctccccctcctcc 21337
>ref|XM_775687.1| PREDICTED: Strongylocentrotus purpuratus similar to protein phosphatase 1, regulatory subunit 10 (LOC575274), mRNA Length = 2549 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 361 cacccccatcaagaacgtccagaa 384 |||| ||||||||||||||||||| Sbjct: 1728 caccaccatcaagaacgtccagaa 1751
>gb|DQ397832.1| Cenarchaeum symbiosum clone C02C07, complete sequence Length = 39120 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 acgtccagaagaggctcgac 394 |||||||||||||||||||| Sbjct: 16179 acgtccagaagaggctcgac 16198
>gb|AC018992.6| Homo sapiens chromosome 8, clone RP11-468O2, complete sequence Length = 151712 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 cccattccccaccacctccc 140 |||||||||||||||||||| Sbjct: 93815 cccattccccaccacctccc 93796
>ref|XM_694793.1| PREDICTED: Danio rerio similar to formin 2 (LOC571224), mRNA Length = 1119 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ccaccacctccccctcctcc 148 |||||||||||||||||||| Sbjct: 688 ccaccacctccccctcctcc 707
>ref|XM_687297.1| PREDICTED: Danio rerio hypothetical protein LOC563938 (LOC563938), mRNA Length = 2790 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ccaccacctccccctcctcc 148 |||||||||||||||||||| Sbjct: 323 ccaccacctccccctcctcc 342
>ref|NG_005304.1| Homo sapiens sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4/GIY-YIG domain containing 2 region (SULT1A4/GIYD2@) on chromosome 16 Length = 124025 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 tccccaccacctccccctcctccg 149 ||||||||| |||||||||||||| Sbjct: 20385 tccccaccagctccccctcctccg 20362
>dbj|AK085110.1| Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched library, clone:D430037P12 product:unclassifiable, full insert sequence Length = 3711 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ccaccacctccccctcctcc 148 |||||||||||||||||||| Sbjct: 794 ccaccacctccccctcctcc 813
>gb|AC025182.4| Homo sapiens chromosome 5 clone CTD-2192A1, complete sequence Length = 109069 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 ttcccattccccaccacctc 138 |||||||||||||||||||| Sbjct: 10473 ttcccattccccaccacctc 10492
>dbj|AK030725.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730414B01 product:phosphatidylinositol 4-kinase type 2 alpha, full insert sequence Length = 3606 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 407 gccaaggcctgggcctgcaccgtcaccg 434 |||| ||||||||||||||||| ||||| Sbjct: 286 gccagggcctgggcctgcaccgccaccg 259
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ccaccacctccccctcctcc 148 |||||||||||||||||||| Sbjct: 12624966 ccaccacctccccctcctcc 12624985 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ccaccacctccccctcctcc 148 |||||||||||||||||||| Sbjct: 5034064 ccaccacctccccctcctcc 5034045
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 ccaccacctccccctcctccggca 152 ||||||||||| |||||||||||| Sbjct: 16287507 ccaccacctcctcctcctccggca 16287484
>gb|AC133555.3| Homo sapiens chromosome 16 clone RP11-345J4, complete sequence Length = 200812 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 tccccaccacctccccctcctccg 149 ||||||||| |||||||||||||| Sbjct: 67616 tccccaccagctccccctcctccg 67639
>gb|AC154177.2| Mus musculus BAC clone RP23-465J20 from chromosome 17, complete sequence Length = 206481 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ccaccacctccccctcctcc 148 |||||||||||||||||||| Sbjct: 46525 ccaccacctccccctcctcc 46544
>ref|NM_001004962.1| Xenopus tropicalis MGC89288 protein (MGC89288), mRNA Length = 1670 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 tccgcccccacctccaccgt 206 |||||||||||||||||||| Sbjct: 768 tccgcccccacctccaccgt 787
>gb|AC025450.4|AC025450 Homo sapiens chromosome 5 clone CTD-2135E22, complete sequence Length = 127309 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 ttcccattccccaccacctc 138 |||||||||||||||||||| Sbjct: 6318 ttcccattccccaccacctc 6299
>gb|AC068228.8| Homo sapiens chromosome 8, clone RP11-539E17, complete sequence Length = 200622 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 cccattccccaccacctccc 140 |||||||||||||||||||| Sbjct: 140849 cccattccccaccacctccc 140868
>gb|AE004825.1| Pseudomonas aeruginosa PAO1, section 386 of 529 of the complete genome Length = 10163 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 ctcgacgcgcgcgccgatgc 408 |||||||||||||||||||| Sbjct: 4004 ctcgacgcgcgcgccgatgc 3985
>ref|XM_573442.1| PREDICTED: Rattus norvegicus R3H domain (binds single-stranded nucleic acids) containing (predicted) (R3hdm_predicted), mRNA Length = 4804 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ccaccacctccccctcctcc 148 |||||||||||||||||||| Sbjct: 2324 ccaccacctccccctcctcc 2343
>gb|AC104430.3| Homo sapiens chromosome 8 clone RP11-391E1 map 8q24.2, complete sequence Length = 170376 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 cccattccccaccacctccc 140 |||||||||||||||||||| Sbjct: 78989 cccattccccaccacctccc 79008
>dbj|AP004757.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0652D10 Length = 156744 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ccaccacctccccctcctcc 148 |||||||||||||||||||| Sbjct: 107279 ccaccacctccccctcctcc 107298
>dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1172G12 Length = 171974 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ccaccacctccccctcctcc 148 |||||||||||||||||||| Sbjct: 76178 ccaccacctccccctcctcc 76159
>gb|BC089309.1| Mus musculus phosphatidylinositol 4-kinase type 2 alpha, mRNA (cDNA clone IMAGE:6827827), with apparent retained intron Length = 4323 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 407 gccaaggcctgggcctgcaccgtcaccg 434 |||| ||||||||||||||||| ||||| Sbjct: 262 gccagggcctgggcctgcaccgccaccg 235
>gb|AF218037.1|AF218037 Aeromonas salmonicida RTX protein (asx) gene, complete cds Length = 14660 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 gccgatgccaaggcctgggc 420 |||||||||||||||||||| Sbjct: 404 gccgatgccaaggcctgggc 385
>dbj|AK106381.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-D12, full insert sequence Length = 1107 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ccaccacctccccctcctcc 148 |||||||||||||||||||| Sbjct: 155 ccaccacctccccctcctcc 136
>emb|Z63781.1|HS8H5F H.sapiens CpG island DNA genomic Mse1 fragment, clone 8h5, forward read cpg8h5.ft1d Length = 289 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 tgccaaggcctgggcctgca 425 |||||||||||||||||||| Sbjct: 237 tgccaaggcctgggcctgca 218
>gb|AC149222.4| Mus musculus BAC clone RP23-325D10 from 7, complete sequence Length = 220651 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ccaccacctccccctcctcc 148 |||||||||||||||||||| Sbjct: 168082 ccaccacctccccctcctcc 168063
>dbj|AK061434.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-A08, full insert sequence Length = 975 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 129 ccaccacctccccctcctccggca 152 ||||||||||| |||||||||||| Sbjct: 102 ccaccacctcctcctcctccggca 125
>gb|AC016968.24| Homo sapiens 3 BAC RP11-59J16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 152586 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 401 gccgatgccaaggcctgggcctgc 424 |||||||| ||||||||||||||| Sbjct: 85572 gccgatgcaaaggcctgggcctgc 85549
>gb|AC167700.2| Reniera sp. JGI-2005 clone JGIBAYC-5J13, complete sequence Length = 39670 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 accacctccccctcctccgg 150 |||||||||||||||||||| Sbjct: 7567 accacctccccctcctccgg 7586
>gb|AC131790.4| Mus musculus BAC clone RP24-447L18 from 3, complete sequence Length = 170634 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ccaccacctccccctcctcc 148 |||||||||||||||||||| Sbjct: 116469 ccaccacctccccctcctcc 116450
>gb|AC171210.1| Mus musculus BAC clone RP23-36D15 from chromosome 7, complete sequence Length = 221010 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ccaccacctccccctcctcc 148 |||||||||||||||||||| Sbjct: 138675 ccaccacctccccctcctcc 138656
>gb|U37686.1|HSU37686 Human catecholamine-sulfating phenol sulfotransferase (STM) gene complete cds Length = 3225 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 tccccaccacctccccctcctccg 149 ||||||||| |||||||||||||| Sbjct: 1705 tccccaccagctccccctcctccg 1682
>emb|AL591373.8| Mouse DNA sequence from clone RP23-268M6 on chromosome 18, complete sequence Length = 174264 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 ggaggggagagggcgccaga 242 |||||||||||||||||||| Sbjct: 35603 ggaggggagagggcgccaga 35622
>gb|U20499.1|HSU20499 Human thermolabile phenol sulfotransferase (stm) gene, complete cds Length = 8447 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 tccccaccacctccccctcctccg 149 ||||||||| |||||||||||||| Sbjct: 6063 tccccaccagctccccctcctccg 6040
>gb|L34160.1|HUMHAST Human aryl sulfotransferase (HAST) gene, exons 1-8 Length = 7792 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 tccccaccacctccccctcctccg 149 ||||||||| |||||||||||||| Sbjct: 5801 tccccaccagctccccctcctccg 5778
>emb|AL607108.17| Mouse DNA sequence from clone RP23-42F6 on chromosome 11, complete sequence Length = 202842 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ccaccacctccccctcctcc 148 |||||||||||||||||||| Sbjct: 70595 ccaccacctccccctcctcc 70576
>gb|AC090534.10| Mus musculus Strain C57BL6/J chromosome 18 BAC, RP23-233F17, complete sequence Length = 176773 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 ggaggggagagggcgccaga 242 |||||||||||||||||||| Sbjct: 158222 ggaggggagagggcgccaga 158241
>dbj|AP003775.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-206H19, complete sequences Length = 179680 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 tgccaaggcctgggcctgca 425 |||||||||||||||||||| Sbjct: 32062 tgccaaggcctgggcctgca 32043 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,691,015 Number of Sequences: 3902068 Number of extensions: 3691015 Number of successful extensions: 95270 Number of sequences better than 10.0: 93 Number of HSP's better than 10.0 without gapping: 94 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93968 Number of HSP's gapped (non-prelim): 1301 length of query: 437 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 415 effective length of database: 17,147,199,772 effective search space: 7116087905380 effective search space used: 7116087905380 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
