ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart45e01 |
|---|---|
| Clone Library Name | barley_pub |
>RAP_TAROF (O49065) Root allergen protein (RAP)| Length = 157 Score = 35.4 bits (80), Expect = 0.093 Identities = 14/44 (31%), Positives = 26/44 (59%) Frame = +3 Query: 384 PQAYKRFVRSCALVAGDGGVGTLREVHVVSGLPAASSRERLEIL 515 P+A +S + GDGGVGT++ + G+P SS+ +++ + Sbjct: 30 PKAEPETYKSIKTIEGDGGVGTIKSITYSDGVPFTSSKHKVDAI 73
>ALL2_APIGR (P92918) Major allergen Api g 2 (Api g 1.0201)| Length = 159 Score = 33.5 bits (75), Expect = 0.35 Identities = 11/44 (25%), Positives = 28/44 (63%) Frame = +3 Query: 384 PQAYKRFVRSCALVAGDGGVGTLREVHVVSGLPAASSRERLEIL 515 P+ + ++S ++ GDGGVGT++ VH+ + +++++++ Sbjct: 32 PKVLPQLIKSVEILEGDGGVGTVKLVHLGEATEYTTMKQKVDVI 75
>PR1_ASPOF (Q05736) Pathogenesis-related protein 1 (AOPR1)| Length = 158 Score = 33.1 bits (74), Expect = 0.46 Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Frame = +3 Query: 384 PQAYKRFVRSCALVAGDGGVGTLREVHVVS-GLPAASSRERLEIL 515 P+ F+ ++V+GDG VGT+RE+ + + +P + +ERL+ + Sbjct: 32 PKIVPDFIAGGSVVSGDGSVGTIREIKINNPAIPFSYVKERLDFV 76
>ENV_BLVAU (P25057) Env polyprotein precursor [Contains: Coat glycoprotein| GP51; Coat protein GP30] Length = 515 Score = 32.7 bits (73), Expect = 0.60 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%) Frame = -2 Query: 145 WWWLWCWMLGLDAGMHGMVRRV-SVISLALAVLFL-PC 38 W W W W LGL A + + V S+ LAL +LFL PC Sbjct: 418 WQWPWNWDLGLTAWVRETIHSVLSLFLLALLLLFLAPC 455
>PR11_PETCR (P19417) Pathogenesis-related protein A (PR1-1)| Length = 155 Score = 32.7 bits (73), Expect = 0.60 Identities = 13/44 (29%), Positives = 26/44 (59%) Frame = +3 Query: 384 PQAYKRFVRSCALVAGDGGVGTLREVHVVSGLPAASSRERLEIL 515 PQ ++S + GDGGVGT++ VH+ P + +++++ + Sbjct: 32 PQVLPGAIKSSETLEGDGGVGTVKLVHLGDASPFKTMKQKVDAI 75
>ENV_BLVJ (P03380) Env polyprotein precursor [Contains: Coat glycoprotein| GP51; Coat protein GP30] Length = 515 Score = 32.3 bits (72), Expect = 0.79 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%) Frame = -2 Query: 145 WWWLWCWMLGLDAGMHGMVRRV-SVISLALAVLFL-PC 38 W W W W LGL A + + V S+ LAL +LFL PC Sbjct: 418 WQWPWNWDLGLTAWVRETIHSVLSLFLLALFLLFLAPC 455
>ENV_BLVB5 (P25507) Env polyprotein precursor [Contains: Coat glycoprotein| GP51; Coat protein GP30] Length = 515 Score = 32.3 bits (72), Expect = 0.79 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%) Frame = -2 Query: 145 WWWLWCWMLGLDAGMHGMVRRV-SVISLALAVLFL-PC 38 W W W W LGL A + + V S+ LAL +LFL PC Sbjct: 418 WQWPWNWDLGLTAWVRETIHSVLSLFLLALFLLFLAPC 455
>ENV_BLVB2 (P25506) Env polyprotein precursor [Contains: Coat glycoprotein| GP51; Coat protein GP30] Length = 515 Score = 32.3 bits (72), Expect = 0.79 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%) Frame = -2 Query: 145 WWWLWCWMLGLDAGMHGMVRRV-SVISLALAVLFL-PC 38 W W W W LGL A + + V S+ LAL +LFL PC Sbjct: 418 WQWPWNWDLGLTAWVRETIHSVLSLFLLALFLLFLAPC 455
>ENV_BLVAV (P25505) Env polyprotein precursor [Contains: Coat glycoprotein| GP51; Coat protein GP30] Length = 515 Score = 32.3 bits (72), Expect = 0.79 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%) Frame = -2 Query: 145 WWWLWCWMLGLDAGMHGMVRRV-SVISLALAVLFL-PC 38 W W W W LGL A + + V S+ LAL +LFL PC Sbjct: 418 WQWPWNWDLGLTAWVRETIHSVLSLFLLALFLLFLAPC 455
>ENV_BLVAF (P25504) Env polyprotein precursor [Contains: Coat glycoprotein| GP51; Coat protein GP30] Length = 515 Score = 32.3 bits (72), Expect = 0.79 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%) Frame = -2 Query: 145 WWWLWCWMLGLDAGMHGMVRRV-SVISLALAVLFL-PC 38 W W W W LGL A + + V S+ LAL +LFL PC Sbjct: 418 WQWPWNWDLGLTAWVRETIHSVLSLFLLALFLLFLAPC 455
>ENV_BLV (P51519) Env polyprotein precursor [Contains: Coat glycoprotein| GP51; Coat protein GP30] Length = 515 Score = 32.3 bits (72), Expect = 0.79 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%) Frame = -2 Query: 145 WWWLWCWMLGLDAGMHGMVRRV-SVISLALAVLFL-PC 38 W W W W LGL A + + V S+ LAL +LFL PC Sbjct: 418 WQWPWNWDLGLTAWVRETIHSVLSLFLLALFLLFLAPC 455
>RNS1_PANGI (P80889) Ribonuclease 1 (EC 3.1.-.-)| Length = 154 Score = 31.6 bits (70), Expect = 1.3 Identities = 12/44 (27%), Positives = 28/44 (63%) Frame = +3 Query: 384 PQAYKRFVRSCALVAGDGGVGTLREVHVVSGLPAASSRERLEIL 515 P+A+ + ++S ++ GDGGVGT++ V + + ++R++ + Sbjct: 31 PKAFPQAIKSSEIIEGDGGVGTVKLVTLGEASQFNTMKQRIDAI 74
>RNS2_PANGI (P80890) Ribonuclease 2 (EC 3.1.-.-)| Length = 153 Score = 31.6 bits (70), Expect = 1.3 Identities = 12/44 (27%), Positives = 27/44 (61%) Frame = +3 Query: 384 PQAYKRFVRSCALVAGDGGVGTLREVHVVSGLPAASSRERLEIL 515 P+A+ ++S ++ G+GGVGT++ V + P + + R++ + Sbjct: 31 PKAFPEGIKSVQVLEGNGGVGTIKNVTLGDATPFNTMKTRIDAI 74
>PR13_PETCR (P19418) Pathogenesis-related protein B (PR1-3)| Length = 155 Score = 31.2 bits (69), Expect = 1.8 Identities = 12/44 (27%), Positives = 26/44 (59%) Frame = +3 Query: 384 PQAYKRFVRSCALVAGDGGVGTLREVHVVSGLPAASSRERLEIL 515 P+ ++S + GDGGVGT++ VH+ P + +++++ + Sbjct: 32 PRVLPGAIKSSETLEGDGGVGTVKLVHLGDASPFKTMKQKVDAI 75
>LMO6_MOUSE (Q80VL3) LIM domain only protein 6 (Triple LIM domain protein 6)| Length = 624 Score = 30.4 bits (67), Expect = 3.0 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = +3 Query: 42 GKKRTASAREITETRRTMPCIPASSPSIQHHNHHHR 149 G +RT SA R P P +PS HH+HH R Sbjct: 485 GPRRTLSAPPAQRRRPRSP--PPRTPSCHHHHHHRR 518
>PO4F1_HUMAN (Q01851) POU domain, class 4, transcription factor 1| (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Oct-T1) (Homeobox/POU domain protein RDC-1) Length = 423 Score = 30.0 bits (66), Expect = 3.9 Identities = 11/37 (29%), Positives = 17/37 (45%) Frame = +3 Query: 36 AHGKKRTASAREITETRRTMPCIPASSPSIQHHNHHH 146 + GK T ++PC S+ + HH+HHH Sbjct: 69 SQGKSHPFKPDATYHTMNSVPCTSTSTVPLAHHHHHH 105
>PO4F1_MOUSE (P17208) POU domain, class 4, transcription factor 1| (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Brn-3.0) Length = 421 Score = 30.0 bits (66), Expect = 3.9 Identities = 11/37 (29%), Positives = 17/37 (45%) Frame = +3 Query: 36 AHGKKRTASAREITETRRTMPCIPASSPSIQHHNHHH 146 + GK T ++PC S+ + HH+HHH Sbjct: 69 SQGKSHPFKPDATYHTMNSVPCTSTSTVPLAHHHHHH 105
>MPAC1_CARBE (P38949) Major pollen allergen Car b 1 isoforms 1A and 1B (Car B I)| Length = 159 Score = 29.6 bits (65), Expect = 5.1 Identities = 12/42 (28%), Positives = 23/42 (54%) Frame = +3 Query: 384 PQAYKRFVRSCALVAGDGGVGTLREVHVVSGLPAASSRERLE 509 P+ + + S V G+GG GT++ + G+P +ER++ Sbjct: 31 PKVAPQVISSVENVGGNGGPGTIKNITFAEGIPFKFVKERVD 72
>MPAC2_CARBE (P38950) Major pollen allergen Car b 1 isoform 2 (Car b I)| Length = 159 Score = 29.3 bits (64), Expect = 6.7 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +3 Query: 384 PQAYKRFVRSCALVAGDGGVGTLREVHVVSGLPAASSRERLE 509 P+ + V S V G+GG GT++++ G P +ER+E Sbjct: 31 PKVSPQAVSSVENVEGNGGPGTIKKITFSEGSPVKYVKERVE 72
>HXA1_RAT (O08656) Homeobox protein Hox-A1| Length = 333 Score = 29.3 bits (64), Expect = 6.7 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 6/22 (27%) Frame = +3 Query: 96 PCIPA------SSPSIQHHNHH 143 PC PA SSP +QHH+HH Sbjct: 124 PCAPAVYSGNLSSPMVQHHHHH 145
>SEPP1_BOVIN (P49907) Selenoprotein P-like protein precursor| Length = 402 Score = 28.9 bits (63), Expect = 8.7 Identities = 13/42 (30%), Positives = 19/42 (45%) Frame = +3 Query: 24 HRSPAHGKKRTASAREITETRRTMPCIPASSPSIQHHNHHHR 149 H P HG + +A + P P + P+ H+HHHR Sbjct: 224 HPHPHHGHQLHENAHLSESPKPDTPDTPENPPTSGLHHHHHR 265 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,620,244 Number of Sequences: 219361 Number of extensions: 537456 Number of successful extensions: 3511 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 2718 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3328 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3869946934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
