ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart45d11 |
|---|---|
| Clone Library Name | barley_pub |
>SBP_ARATH (O23264) Putative selenium-binding protein| Length = 490 Score = 155 bits (391), Expect = 7e-38 Identities = 71/97 (73%), Positives = 80/97 (82%) Frame = +3 Query: 192 TPREAMEKGPREGLLYVTCVYNGTGIDKPDYLATVDVDPSSATYSQVIHRLPATHIGDEL 371 TP AM GP E L+YVT VY GTGIDKPDYLATVDVDPSS +YS VIHRLP +GDEL Sbjct: 31 TPLAAMS-GPSEKLIYVTAVYTGTGIDKPDYLATVDVDPSSPSYSSVIHRLPMPFVGDEL 89 Query: 372 HHSGWNACSSCHGDPSTSRRFLILPSLLSGRVYVVDT 482 HHSGWN+CSSCHGD S RR+L+LPSL+SGR+Y +DT Sbjct: 90 HHSGWNSCSSCHGDASVDRRYLVLPSLISGRIYAIDT 126
>SBP2_MOUSE (Q63836) Selenium-binding protein 2 (56 kDa acetaminophen-binding| protein) (AP56) Length = 472 Score = 137 bits (346), Expect = 1e-32 Identities = 64/96 (66%), Positives = 74/96 (77%) Frame = +3 Query: 192 TPREAMEKGPREGLLYVTCVYNGTGIDKPDYLATVDVDPSSATYSQVIHRLPATHIGDEL 371 TP EAM KGPRE ++Y+ C+Y TG + PDYLATVDVDP S YSQVIHRLP ++ DEL Sbjct: 14 TPLEAM-KGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYSQVIHRLPMPYLKDEL 72 Query: 372 HHSGWNACSSCHGDPSTSRRFLILPSLLSGRVYVVD 479 HHSGWN CSSC GD + SR LILP L+S R+YVVD Sbjct: 73 HHSGWNTCSSCFGDSTKSRNKLILPGLMSSRIYVVD 108
>SBP1_MOUSE (P17563) Selenium-binding protein 1 (56 kDa selenium-binding| protein) (SP56) Length = 472 Score = 137 bits (346), Expect = 1e-32 Identities = 64/96 (66%), Positives = 74/96 (77%) Frame = +3 Query: 192 TPREAMEKGPREGLLYVTCVYNGTGIDKPDYLATVDVDPSSATYSQVIHRLPATHIGDEL 371 TP EAM KGPRE ++Y+ C+Y TG + PDYLATVDVDP S YSQVIHRLP ++ DEL Sbjct: 14 TPLEAM-KGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYSQVIHRLPMPYLKDEL 72 Query: 372 HHSGWNACSSCHGDPSTSRRFLILPSLLSGRVYVVD 479 HHSGWN CSSC GD + SR LILP L+S R+YVVD Sbjct: 73 HHSGWNTCSSCFGDSTKSRNKLILPGLISSRIYVVD 108
>SBP1_HUMAN (Q13228) Selenium-binding protein 1| Length = 472 Score = 132 bits (332), Expect = 5e-31 Identities = 62/96 (64%), Positives = 73/96 (76%) Frame = +3 Query: 192 TPREAMEKGPREGLLYVTCVYNGTGIDKPDYLATVDVDPSSATYSQVIHRLPATHIGDEL 371 TP EAM KGPRE ++Y+ C+Y TG + PDYLATVDVDP S Y QVIHRLP ++ DEL Sbjct: 14 TPLEAM-KGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPMPNLKDEL 72 Query: 372 HHSGWNACSSCHGDPSTSRRFLILPSLLSGRVYVVD 479 HHSGWN SSC GD + SR L+LPSL+S R+YVVD Sbjct: 73 HHSGWNTYSSCFGDSTKSRNKLVLPSLISSRIYVVD 108
>SBP_CAEEL (Q21950) Putative selenium-binding protein| Length = 576 Score = 47.0 bits (110), Expect = 3e-05 Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Frame = +3 Query: 207 MEKGPREGLLYVTCVYNGTGIDKPDYLATVDVDPSSATYSQVIHRLPATHIGDELHHSGW 386 +E+ + L + C + G ++ D +A VD+DP+S T+ ++ + T GDE W Sbjct: 83 VEEEQDDELFAIVCCPHSIGYER-DKIALVDLDPTSETFCTILSEVHLTSNGDEPGRMNW 141 Query: 387 NACSSCHGDPST-SRRFLILPSLLSGRVYVV 476 + G+ + RR +I+P + SG++YV+ Sbjct: 142 AKSAESLGEMNKFVRRNIIVPCMNSGKIYVI 172
>SCG1_RAT (O35314) Secretogranin-1 precursor (Secretogranin-I) (SgI)| (Chromogranin B) (CgB) (Glucagonoma peptide) [Contains: GAWK peptide; CCB peptide] Length = 675 Score = 30.0 bits (66), Expect = 3.3 Identities = 14/37 (37%), Positives = 16/37 (43%) Frame = +2 Query: 197 EGGHGEGPARGAPLRHLRLQWHWNRQAGLPGYGGRRP 307 EG GE A + HW Q+ P Y GRRP Sbjct: 261 EGEEGEEGATSEVTKRRPRHHHWRSQSNKPSYEGRRP 297
>SM34_LYTPI (Q05904) 34 kDa spicule matrix protein precursor (LSM34)| Length = 335 Score = 29.6 bits (65), Expect = 4.4 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = +2 Query: 284 PGYGGRRPQFSDVLPGDPQAPG 349 PG+GGR+P F PG Q PG Sbjct: 214 PGFGGRQPGFGGQQPGFGQQPG 235
>PODXL_HUMAN (O00592) Podocalyxin-like protein 1 precursor| Length = 528 Score = 25.8 bits (55), Expect(2) = 4.4 Identities = 11/44 (25%), Positives = 17/44 (38%) Frame = +3 Query: 309 SSATYSQVIHRLPATHIGDELHHSGWNACSSCHGDPSTSRRFLI 440 SS T + HR P T H S W C + ++ ++ Sbjct: 286 SSPTAASTTHRYPKTPSPTVAHESNWAKCEDLETQTQSEKQLVL 329 Score = 22.3 bits (46), Expect(2) = 4.4 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +1 Query: 232 SSTSPASTMALESTSRITWLRWTSTP 309 SST+P+S ++ TS T LR + P Sbjct: 256 SSTAPSSQETVQPTSPATALRTPTLP 281
>MDR11_ARATH (Q9LJX0) Multidrug resistance protein 11 (P-glycoprotein 19)| Length = 1252 Score = 29.3 bits (64), Expect = 5.7 Identities = 17/39 (43%), Positives = 22/39 (56%) Frame = -2 Query: 347 REPVDHLGVRR*TGVDVHRSQVIRLVDSSAIVDAGDVEE 231 +E +D + V R T V HR IR VDS A++ G V E Sbjct: 543 QEALDRVMVGRTTVVVAHRLCTIRNVDSIAVIQQGQVVE 581
>CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor| Length = 1759 Score = 29.3 bits (64), Expect = 5.7 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = +2 Query: 272 QAGLPGYGGRRPQFSDVLPGDPQAPGHP 355 Q GLPG G R D PG+P G P Sbjct: 1058 QDGLPGLNGERGDNGDSYPGNPGLSGQP 1085
>CO4A5_HUMAN (P29400) Collagen alpha-5(IV) chain precursor| Length = 1685 Score = 28.9 bits (63), Expect = 7.5 Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%) Frame = +2 Query: 272 QAGLPGYGGRRPQFSDV-LPGDPQAPGHP 355 Q G PG G + DV LPGDP PG P Sbjct: 661 QPGKPGLPGNPGRDGDVGLPGDPGLPGQP 689
>CSKI1_RAT (Q8VHK2) Caskin-1 (CASK-interacting protein 1)| Length = 1430 Score = 28.9 bits (63), Expect = 7.5 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 16/65 (24%) Frame = +2 Query: 212 EGPARGAPLRHLRLQWHWN--RQAGLPGYGGRRPQF--------------SDVLPGDPQA 343 EGPA G P + +R H + ++A +P G+ Q + PG PQA Sbjct: 734 EGPAPGTPPKEVRSSRHGHSVKRASVPPVPGKPRQVLPSGVSHFTPPQTPTKAQPGSPQA 793 Query: 344 PGHPH 358 G PH Sbjct: 794 LGGPH 798
>COBA2_MOUSE (Q64739) Collagen alpha-2(XI) chain precursor| Length = 1736 Score = 28.9 bits (63), Expect = 7.5 Identities = 22/54 (40%), Positives = 22/54 (40%) Frame = +2 Query: 194 AEGGHGEGPARGAPLRHLRLQWHWNRQAGLPGYGGRRPQFSDVLPGDPQAPGHP 355 A G HGE ARG P GLPG G SD LPG P G P Sbjct: 665 AIGPHGEKGARGKP--------------GLPGMPG-----SDGLPGHPGKEGPP 699
>SYGP1_HUMAN (Q96PV0) Ras GTPase-activating protein SynGAP (Synaptic| Ras-GTPase-activating protein 1) (Synaptic Ras-GAP 1) (Neuronal RasGAP) Length = 1328 Score = 28.5 bits (62), Expect = 9.7 Identities = 17/51 (33%), Positives = 19/51 (37%) Frame = +2 Query: 200 GGHGEGPARGAPLRHLRLQWHWNRQAGLPGYGGRRPQFSDVLPGDPQAPGH 352 GGHG G G P H H + + G P PGD AP H Sbjct: 928 GGHGGGGGHGPPSSHHHHHHHHHHRGGEP-------------PGDTFAPFH 965
>CO4A4_BOVIN (Q29442) Collagen alpha-4(IV) chain (Fragment)| Length = 453 Score = 28.5 bits (62), Expect = 9.7 Identities = 14/25 (56%), Positives = 15/25 (60%) Frame = +2 Query: 278 GLPGYGGRRPQFSDVLPGDPQAPGH 352 G PG GRR + D LPG P PGH Sbjct: 172 GEPGLDGRRGE--DGLPGSPGPPGH 194
>CINA_GLOVI (Q7NHU4) CinA-like protein| Length = 426 Score = 28.5 bits (62), Expect = 9.7 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -2 Query: 272 VDSSAIVDAGDVEEPLARALLHGLPRR 192 VD ++D G V EP+ARA+ G+ R Sbjct: 319 VDEQRMIDHGAVSEPVARAMAEGVRNR 345
>DOT1L_HUMAN (Q8TEK3) Histone-lysine N-methyltransferase, H3 lysine-79 specific| (EC 2.1.1.43) (Histone H3-K79 methyltransferase) (H3-K79-HMTase) (DOT1-like protein) Length = 1739 Score = 28.5 bits (62), Expect = 9.7 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 3/32 (9%) Frame = -2 Query: 239 VEEPLARALLHGLPRRGVPGALRRA---APGT 153 +EEP A A L PR+G PG+L A +PGT Sbjct: 1279 LEEPSADAKLAAHPRKGFPGSLSGADGLSPGT 1310 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,362,308 Number of Sequences: 219361 Number of extensions: 1040382 Number of successful extensions: 3704 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3424 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3685 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
