Clone Name | bart45d07 |
---|---|
Clone Library Name | barley_pub |
>gb|AY107283.1| Zea mays PCO076711 mRNA sequence Length = 1604 Score = 345 bits (174), Expect = 1e-91 Identities = 291/330 (88%) Strand = Plus / Plus Query: 228 tcctttcgatttttcttctatgcaaagtttgctcaatgatccatctataaaggagatggc 287 |||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 390 tccttttgattttggttctatgcaaagtttgctcaatgatccatctattaaggagatggc 449 Query: 288 agatcagattgcaagggaccctgcattcaatcagatggctgagcagctacagaaaggtgc 347 |||||| ||||||||||| ||||||||||| | |||||||||||||||||||| | |||| Sbjct: 450 agatcaaattgcaagggatcctgcattcaaccggatggctgagcagctacagagaagtgc 509 Query: 348 tcagggtgcaggagaacagggcatgcctccattggatcctcatcaatacattgaaaaaat 407 ||| | ||||||||||||||| |||||||| ||||||| |||||||| |||| ||| Sbjct: 510 tcaaagcacaggagaacagggcacacctccattaaatcctcaacaatacatggaaacaat 569 Query: 408 gcaaagggtcatggaaaacccgcaattcatgacaatggcagaacgcctcgggactgctct 467 ||||| ||||||||||||||| || || ||||| |||||||| || || |||| |||||| Sbjct: 570 gcaaaaggtcatggaaaacccccagtttatgaccatggcagagcgtctggggaatgctct 629 Query: 468 tatgcaggatcctgctatgtccagtatgctggaaaacttgaccagtccaacacataagga 527 ||||||||||||||||||||||||||||||||||| ||| | |||||| |||||||||| Sbjct: 630 tatgcaggatcctgctatgtccagtatgctggaaacctttagtagtccatcacataagga 689 Query: 528 ggagcttgaagagcgcatgtctcgtattaa 557 | |||| |||||||| |||||||| ||||| Sbjct: 690 gcagctggaagagcgtatgtctcgcattaa 719
>gb|AY106235.1| Zea mays PCO066039 mRNA sequence Length = 1360 Score = 226 bits (114), Expect = 6e-56 Identities = 255/302 (84%) Strand = Plus / Plus Query: 235 gatttttcttctatgcaaagtttgctcaatgatccatctataaaggagatggcagatcag 294 ||||||||||||||| | ||||||||||| ||||| |||| |||||||| || || Sbjct: 205 gatttttcttctatgagcaacttgctcaatgacccatcgataagagagatggctgagcaa 264 Query: 295 attgcaagggaccctgcattcaatcagatggctgagcagctacagaaaggtgctcagggt 354 |||||||| ||||||| ||||| ||||||||||| ||||| |||||| ||||||||||| Sbjct: 265 attgcaagtgaccctgtgttcaaccagatggctgaacagcttcagaaaagtgctcagggt 324 Query: 355 gcaggagaacagggcatgcctccattggatcctcatcaatacattgaaaaaatgcaaagg 414 || ||||||||||| || ||| ||||||||||||| || || || |||| ||||||| Sbjct: 325 gctggagaacagggtattcctgcattggatcctcaacagtatatggaaacaatgcaacaa 384 Query: 415 gtcatggaaaacccgcaattcatgacaatggcagaacgcctcgggactgctcttatgcag 474 |||||| ||||||| || || || |||||||||| || || |||| ||| ||||||||| Sbjct: 385 gtcatgcaaaaccctcagtttgtgtcaatggcagagcgtcttgggaatgcccttatgcag 444 Query: 475 gatcctgctatgtccagtatgctggaaaacttgaccagtccaacacataaggaggagctt 534 ||||||||||||||||||||||| || ||||||||||||||| | ||||||||| ||||| Sbjct: 445 gatcctgctatgtccagtatgcttgagaacttgaccagtccagctcataaggagcagctt 504 Query: 535 ga 536 || Sbjct: 505 ga 506
>dbj|AK121370.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023125M12, full insert sequence Length = 1529 Score = 194 bits (98), Expect = 2e-46 Identities = 251/302 (83%) Strand = Plus / Plus Query: 256 ttgctcaatgatccatctataaaggagatggcagatcagattgcaagggaccctgcattc 315 ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| Sbjct: 352 ttgctcaatgatccatctataaaggagatggcagagcagattgcaagcgaccctgtgttc 411 Query: 316 aatcagatggctgagcagctacagaaaggtgctcagggtgcaggagaacagggcatgcct 375 | |||||||| |||||||| ||||| ||||||| | | || |||||||| ||| Sbjct: 412 acccagatggcagagcagctgcagaagagtgctcatgtgaccggggaacagggtggccct 471 Query: 376 ccattggatcctcatcaatacattgaaaaaatgcaaagggtcatggaaaacccgcaattc 435 ||||||||||||| || ||||| |||| |||| | |||||| ||||||| |||||| Sbjct: 472 gcattggatcctcagcagtacatggaaacaatgacacaagtcatgcaaaaccctcaattc 531 Query: 436 atgacaatggcagaacgcctcgggactgctcttatgcaggatcctgctatgtccagtatg 495 ||| ||||||||||||| || |||| | |||||||||||||||||| |||||||||||| Sbjct: 532 atgtcaatggcagaacgtcttgggaatactcttatgcaggatcctggaatgtccagtatg 591 Query: 496 ctggaaaacttgaccagtccaacacataaggaggagcttgaagagcgcatgtctcgtatt 555 || || | ||||| ||||| | ||||||||| |||||||||||| ||||| |||||| Sbjct: 592 ctcgagagtttgactagtccttctcataaggagctgcttgaagagcggatgtcccgtatt 651 Query: 556 aa 557 || Sbjct: 652 aa 653
>dbj|AK098858.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M21, full insert sequence Length = 1475 Score = 194 bits (98), Expect = 2e-46 Identities = 251/302 (83%) Strand = Plus / Plus Query: 256 ttgctcaatgatccatctataaaggagatggcagatcagattgcaagggaccctgcattc 315 ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| Sbjct: 352 ttgctcaatgatccatctataaaggagatggcagagcagattgcaagcgaccctgtgttc 411 Query: 316 aatcagatggctgagcagctacagaaaggtgctcagggtgcaggagaacagggcatgcct 375 | |||||||| |||||||| ||||| ||||||| | | || |||||||| ||| Sbjct: 412 acccagatggcagagcagctgcagaagagtgctcatgtgaccggggaacagggtggccct 471 Query: 376 ccattggatcctcatcaatacattgaaaaaatgcaaagggtcatggaaaacccgcaattc 435 ||||||||||||| || ||||| |||| |||| | |||||| ||||||| |||||| Sbjct: 472 gcattggatcctcagcagtacatggaaacaatgacacaagtcatgcaaaaccctcaattc 531 Query: 436 atgacaatggcagaacgcctcgggactgctcttatgcaggatcctgctatgtccagtatg 495 ||| ||||||||||||| || |||| | |||||||||||||||||| |||||||||||| Sbjct: 532 atgtcaatggcagaacgtcttgggaatactcttatgcaggatcctggaatgtccagtatg 591 Query: 496 ctggaaaacttgaccagtccaacacataaggaggagcttgaagagcgcatgtctcgtatt 555 || || | ||||| ||||| | ||||||||| |||||||||||| ||||| |||||| Sbjct: 592 ctcgagagtttgactagtccttctcataaggagctgcttgaagagcggatgtcccgtatt 651 Query: 556 aa 557 || Sbjct: 652 aa 653
>dbj|AK062078.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-F07, full insert sequence Length = 1418 Score = 186 bits (94), Expect = 5e-44 Identities = 250/302 (82%) Strand = Plus / Plus Query: 256 ttgctcaatgatccatctataaaggagatggcagatcagattgcaagggaccctgcattc 315 ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| Sbjct: 357 ttgctcaatgatccatctataaaggagatggcagagcagattgcaagcgaccctgtgttc 416 Query: 316 aatcagatggctgagcagctacagaaaggtgctcagggtgcaggagaacagggcatgcct 375 | |||||||| |||||||| ||||| ||||||| | | || |||||||| ||| Sbjct: 417 acccagatggcagagcagctgcagaagagtgctcatgtgaccggggaacagggtggccct 476 Query: 376 ccattggatcctcatcaatacattgaaaaaatgcaaagggtcatggaaaacccgcaattc 435 ||||||||||||| || |||| |||| |||| | |||||| ||||||| |||||| Sbjct: 477 gcattggatcctcagcagcacatggaaacaatgacacaagtcatgcaaaaccctcaattc 536 Query: 436 atgacaatggcagaacgcctcgggactgctcttatgcaggatcctgctatgtccagtatg 495 ||| ||||||||||||| || |||| | |||||||||||||||||| |||||||||||| Sbjct: 537 atgtcaatggcagaacgtcttgggaatactcttatgcaggatcctggaatgtccagtatg 596 Query: 496 ctggaaaacttgaccagtccaacacataaggaggagcttgaagagcgcatgtctcgtatt 555 || || | ||||| ||||| | ||||||||| |||||||||||| ||||| |||||| Sbjct: 597 ctcgagagtttgactagtccttctcataaggagctgcttgaagagcggatgtcccgtatt 656 Query: 556 aa 557 || Sbjct: 657 aa 658
>gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0065A15, complete sequence Length = 168806 Score = 125 bits (63), Expect = 2e-25 Identities = 174/211 (82%) Strand = Plus / Plus Query: 265 gatccatctataaaggagatggcagatcagattgcaagggaccctgcattcaatcagatg 324 |||||||||||||||||||||||||| ||||||||||| ||||||| |||| |||||| Sbjct: 150143 gatccatctataaaggagatggcagagcagattgcaagcgaccctgtgttcacccagatg 150202 Query: 325 gctgagcagctacagaaaggtgctcagggtgcaggagaacagggcatgcctccattggat 384 || |||||||| ||||| ||||||| | | || |||||||| ||| |||||||| Sbjct: 150203 gcagagcagctgcagaagagtgctcatgtgaccggggaacagggtggccctgcattggat 150262 Query: 385 cctcatcaatacattgaaaaaatgcaaagggtcatggaaaacccgcaattcatgacaatg 444 ||||| || ||||| |||| |||| | |||||| ||||||| ||||||||| ||||| Sbjct: 150263 cctcagcagtacatggaaacaatgacacaagtcatgcaaaaccctcaattcatgtcaatg 150322 Query: 445 gcagaacgcctcgggactgctcttatgcagg 475 |||||||| || |||| | |||||||||||| Sbjct: 150323 gcagaacgtcttgggaatactcttatgcagg 150353 Score = 60.0 bits (30), Expect = 8e-06 Identities = 72/86 (83%) Strand = Plus / Plus Query: 472 caggatcctgctatgtccagtatgctggaaaacttgaccagtccaacacataaggaggag 531 |||||||||| |||||||||||||| || | ||||| ||||| | ||||||||| | Sbjct: 150434 caggatcctggaatgtccagtatgctcgagagtttgactagtccttctcataaggagctg 150493 Query: 532 cttgaagagcgcatgtctcgtattaa 557 ||||||||||| ||||| |||||||| Sbjct: 150494 cttgaagagcggatgtcccgtattaa 150519
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 125 bits (63), Expect = 2e-25 Identities = 174/211 (82%) Strand = Plus / Plus Query: 265 gatccatctataaaggagatggcagatcagattgcaagggaccctgcattcaatcagatg 324 |||||||||||||||||||||||||| ||||||||||| ||||||| |||| |||||| Sbjct: 19667068 gatccatctataaaggagatggcagagcagattgcaagcgaccctgtgttcacccagatg 19667127 Query: 325 gctgagcagctacagaaaggtgctcagggtgcaggagaacagggcatgcctccattggat 384 || |||||||| ||||| ||||||| | | || |||||||| ||| |||||||| Sbjct: 19667128 gcagagcagctgcagaagagtgctcatgtgaccggggaacagggtggccctgcattggat 19667187 Query: 385 cctcatcaatacattgaaaaaatgcaaagggtcatggaaaacccgcaattcatgacaatg 444 ||||| || ||||| |||| |||| | |||||| ||||||| ||||||||| ||||| Sbjct: 19667188 cctcagcagtacatggaaacaatgacacaagtcatgcaaaaccctcaattcatgtcaatg 19667247 Query: 445 gcagaacgcctcgggactgctcttatgcagg 475 |||||||| || |||| | |||||||||||| Sbjct: 19667248 gcagaacgtcttgggaatactcttatgcagg 19667278 Score = 60.0 bits (30), Expect = 8e-06 Identities = 72/86 (83%) Strand = Plus / Plus Query: 472 caggatcctgctatgtccagtatgctggaaaacttgaccagtccaacacataaggaggag 531 |||||||||| |||||||||||||| || | ||||| ||||| | ||||||||| | Sbjct: 19667359 caggatcctggaatgtccagtatgctcgagagtttgactagtccttctcataaggagctg 19667418 Query: 532 cttgaagagcgcatgtctcgtattaa 557 ||||||||||| ||||| |||||||| Sbjct: 19667419 cttgaagagcggatgtcccgtattaa 19667444
>dbj|AP006756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0450E05 Length = 176553 Score = 125 bits (63), Expect = 2e-25 Identities = 174/211 (82%) Strand = Plus / Plus Query: 265 gatccatctataaaggagatggcagatcagattgcaagggaccctgcattcaatcagatg 324 |||||||||||||||||||||||||| ||||||||||| ||||||| |||| |||||| Sbjct: 12754 gatccatctataaaggagatggcagagcagattgcaagcgaccctgtgttcacccagatg 12813 Query: 325 gctgagcagctacagaaaggtgctcagggtgcaggagaacagggcatgcctccattggat 384 || |||||||| ||||| ||||||| | | || |||||||| ||| |||||||| Sbjct: 12814 gcagagcagctgcagaagagtgctcatgtgaccggggaacagggtggccctgcattggat 12873 Query: 385 cctcatcaatacattgaaaaaatgcaaagggtcatggaaaacccgcaattcatgacaatg 444 ||||| || ||||| |||| |||| | |||||| ||||||| ||||||||| ||||| Sbjct: 12874 cctcagcagtacatggaaacaatgacacaagtcatgcaaaaccctcaattcatgtcaatg 12933 Query: 445 gcagaacgcctcgggactgctcttatgcagg 475 |||||||| || |||| | |||||||||||| Sbjct: 12934 gcagaacgtcttgggaatactcttatgcagg 12964 Score = 60.0 bits (30), Expect = 8e-06 Identities = 72/86 (83%) Strand = Plus / Plus Query: 472 caggatcctgctatgtccagtatgctggaaaacttgaccagtccaacacataaggaggag 531 |||||||||| |||||||||||||| || | ||||| ||||| | ||||||||| | Sbjct: 13045 caggatcctggaatgtccagtatgctcgagagtttgactagtccttctcataaggagctg 13104 Query: 532 cttgaagagcgcatgtctcgtattaa 557 ||||||||||| ||||| |||||||| Sbjct: 13105 cttgaagagcggatgtcccgtattaa 13130
>ref|XM_483562.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1306 Score = 111 bits (56), Expect = 2e-21 Identities = 92/104 (88%) Strand = Plus / Plus Query: 230 ctttcgatttttcttctatgcaaagtttgctcaatgatccatctataaaggagatggcag 289 |||| |||||| ||||| |||| || |||||||||||||||||| |||||||||| |||| Sbjct: 175 cttttgattttgcttctttgcacagcttgctcaatgatccatctgtaaaggagatagcag 234 Query: 290 atcagattgcaagggaccctgcattcaatcagatggctgagcag 333 |||||||||||| ||||||||| |||| |||||||| |||||| Sbjct: 235 atcagattgcaaaggaccctgcgttcacccagatggcggagcag 278 Score = 95.6 bits (48), Expect = 1e-16 Identities = 105/124 (84%) Strand = Plus / Plus Query: 394 tacattgaaaaaatgcaaagggtcatggaaaacccgcaattcatgacaatggcagaacgc 453 |||||||||| |||||||| | ||||||||| ||| || || | ||||||||||| || Sbjct: 324 tacattgaaacaatgcaaaagttcatggaaagcccccatttttttacaatggcagagcgt 383 Query: 454 ctcgggactgctcttatgcaggatcctgctatgtccagtatgctggaaaacttgaccagt 513 || ||| ||||||| || |||||||||| ||||||||| |||||||||||||||| ||| Sbjct: 384 cttggggatgctcttgtgaaggatcctgcaatgtccagtctgctggaaaacttgactagt 443 Query: 514 ccaa 517 |||| Sbjct: 444 ccaa 447
>dbj|AK108758.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-G03, full insert sequence Length = 1292 Score = 111 bits (56), Expect = 2e-21 Identities = 92/104 (88%) Strand = Plus / Plus Query: 230 ctttcgatttttcttctatgcaaagtttgctcaatgatccatctataaaggagatggcag 289 |||| |||||| ||||| |||| || |||||||||||||||||| |||||||||| |||| Sbjct: 175 cttttgattttgcttctttgcacagcttgctcaatgatccatctgtaaaggagatagcag 234 Query: 290 atcagattgcaagggaccctgcattcaatcagatggctgagcag 333 |||||||||||| ||||||||| |||| |||||||| |||||| Sbjct: 235 atcagattgcaaaggaccctgcgttcacccagatggcggagcag 278 Score = 95.6 bits (48), Expect = 1e-16 Identities = 105/124 (84%) Strand = Plus / Plus Query: 394 tacattgaaaaaatgcaaagggtcatggaaaacccgcaattcatgacaatggcagaacgc 453 |||||||||| |||||||| | ||||||||| ||| || || | ||||||||||| || Sbjct: 324 tacattgaaacaatgcaaaagttcatggaaagcccccatttttttacaatggcagagcgt 383 Query: 454 ctcgggactgctcttatgcaggatcctgctatgtccagtatgctggaaaacttgaccagt 513 || ||| ||||||| || |||||||||| ||||||||| |||||||||||||||| ||| Sbjct: 384 cttggggatgctcttgtgaaggatcctgcaatgtccagtctgctggaaaacttgactagt 443 Query: 514 ccaa 517 |||| Sbjct: 444 ccaa 447
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 265 gatccatctataaaggagatggcagatcagattgcaagggaccctgcattcaatcagatg 324 ||||||||| |||||||||| |||||||||||||||| ||||||||| |||| |||||| Sbjct: 26976607 gatccatctgtaaaggagatagcagatcagattgcaaaggaccctgcgttcacccagatg 26976666 Query: 325 gctgagcag 333 || |||||| Sbjct: 26976667 gcggagcag 26976675 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 473 aggatcctgctatgtccagtatgctggaaaacttgaccagtccaa 517 |||||||||| ||||||||| |||||||||||||||| ||||||| Sbjct: 26976910 aggatcctgcaatgtccagtctgctggaaaacttgactagtccaa 26976954 Score = 40.1 bits (20), Expect = 7.6 Identities = 47/56 (83%) Strand = Plus / Plus Query: 394 tacattgaaaaaatgcaaagggtcatggaaaacccgcaattcatgacaatggcaga 449 |||||||||| |||||||| | ||||||||| ||| || || | ||||||||||| Sbjct: 26976721 tacattgaaacaatgcaaaagttcatggaaagcccccatttttttacaatggcaga 26976776 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 ccgcgccgccgagctccgcc 42 |||||||||||||||||||| Sbjct: 21084354 ccgcgccgccgagctccgcc 21084373
>dbj|AP004592.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0666G10 Length = 150761 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 265 gatccatctataaaggagatggcagatcagattgcaagggaccctgcattcaatcagatg 324 ||||||||| |||||||||| |||||||||||||||| ||||||||| |||| |||||| Sbjct: 78007 gatccatctgtaaaggagatagcagatcagattgcaaaggaccctgcgttcacccagatg 78066 Query: 325 gctgagcag 333 || |||||| Sbjct: 78067 gcggagcag 78075 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 473 aggatcctgctatgtccagtatgctggaaaacttgaccagtccaa 517 |||||||||| ||||||||| |||||||||||||||| ||||||| Sbjct: 78310 aggatcctgcaatgtccagtctgctggaaaacttgactagtccaa 78354 Score = 40.1 bits (20), Expect = 7.6 Identities = 47/56 (83%) Strand = Plus / Plus Query: 394 tacattgaaaaaatgcaaagggtcatggaaaacccgcaattcatgacaatggcaga 449 |||||||||| |||||||| | ||||||||| ||| || || | ||||||||||| Sbjct: 78121 tacattgaaacaatgcaaaagttcatggaaagcccccatttttttacaatggcaga 78176
>gb|BT013193.1| Lycopersicon esculentum clone 134344R, mRNA sequence Length = 1379 Score = 60.0 bits (30), Expect = 8e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 292 cagattgcaagggaccctgcattcaatcagatggctgagcagctacagaa 341 |||||||||| ||||||||||| ||||||||||| |||||||| ||||| Sbjct: 313 cagattgcaaaagaccctgcatttaatcagatggcagagcagcttcagaa 362
>gb|AY395742.1| Vitis aestivalis putative ankyrin-repeat protein mRNA, complete cds Length = 1065 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 286 gcagatcagattgcaagggaccctgcattcaatcagatggctgagcagct 335 ||||| |||||||||| || ||||||||||| |||||||| |||||||| Sbjct: 199 gcagaacagattgcaaaagatcctgcattcaaccagatggcagagcagct 248 Score = 46.1 bits (23), Expect = 0.12 Identities = 59/71 (83%) Strand = Plus / Plus Query: 469 atgcaggatcctgctatgtccagtatgctggaaaacttgaccagtccaacacataaggag 528 ||||||||||| |||||||||| ||||| || || ||| | | ||||||||| ||||| Sbjct: 385 atgcaggatccatctatgtccagcatgcttgagaatttggctaatccaacacacaaggac 444 Query: 529 gagcttgaaga 539 |||||||||| Sbjct: 445 cagcttgaaga 455
>gb|AF358770.1| Oryza sativa clone Osl81 apospory-associated protein mRNA, partial cds Length = 710 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Plus Query: 484 atgtccagtatgctggaaaacttgaccagtccaacacataaggaggagcttgaagagcgc 543 |||||||||||||| || | ||||| ||||| | ||||||||| |||||||||||| Sbjct: 4 atgtccagtatgctcgagagtttgactagtccttctcataaggagctgcttgaagagcgg 63 Query: 544 atgtctcgtattaa 557 ||||| |||||||| Sbjct: 64 atgtcccgtattaa 77
>gb|AY258008.1| Nicotiana tabacum TGB12K interacting protein 3 (TIP3) mRNA, complete cds Length = 1047 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 292 cagattgcaagggaccctgcattcaatcagatggctgagcagctacagaa 341 |||||||||| || ||| |||| |||||||||||||||||||| ||||| Sbjct: 214 cagattgcaaaagatccttcatttaatcagatggctgagcagcttcagaa 263
>gb|AY258007.1| Nicotiana tabacum TGB12K interacting protein 2 (TIP2) mRNA, complete cds Length = 1050 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 292 cagattgcaagggaccctgcattcaatcagatggctgagcagctacagaa 341 |||||||||| || ||| |||| |||||||||||||||||||| ||||| Sbjct: 217 cagattgcaaaagatccttcatttaatcagatggctgagcagcttcagaa 266
>gb|AY107157.1| Zea mays PCO066038 mRNA sequence Length = 776 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 475 gatcctgctatgtccagtatgctggaaaacttgaccagtccaacacataaggaggagctt 534 ||||||||||||||||| ||||| || |||||||||| || | ||||||||| ||||| Sbjct: 306 gatcctgctatgtccagaatgcttgagaacttgaccattctggctcataaggagtagctt 365 Query: 535 ga 536 || Sbjct: 366 ga 367
>gb|BC074390.1| Xenopus laevis MGC84343 protein, mRNA (cDNA clone MGC:84343 IMAGE:6958391), complete cds Length = 5118 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Plus Query: 281 agatggcagatcagattgcaaggga 305 ||||||||||||||||||||||||| Sbjct: 1018 agatggcagatcagattgcaaggga 1042
>gb|AF352797.1|AF352797 Nicotiana tabacum ankyrin-repeat protein HBP1 mRNA, complete cds Length = 1331 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 307 cctgcattcaatcagatggctgagcagctacagaa 341 |||||||| ||||||||||| |||||||| ||||| Sbjct: 324 cctgcatttaatcagatggcggagcagcttcagaa 358
>emb|AJ586515.1| Fagus sylvatica partial ank1 mRNA for ankyrin-repeat protein Length = 700 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 307 cctgcattcaatcagatggctgagcagctacagaa 341 ||||||||||| |||||||| |||||||| ||||| Sbjct: 424 cctgcattcaaccagatggcagagcagctccagaa 458
>dbj|D37939.1|PENPSB31AB Pennisetum ciliare apomixis-associated mRNA, clone:psb3-1a Length = 876 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 520 cataaggaggagcttgaagagcgcatgtctcgtat 554 ||||||||| ||||||||||||| ||| ||||||| Sbjct: 25 cataaggagcagcttgaagagcgaatggctcgtat 59
>gb|U13149.1|PCU13149 Pennisetum ciliare possible apospory-associated mRNA clone pSUB 3-1a, partial cds Length = 876 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 520 cataaggaggagcttgaagagcgcatgtctcgtat 554 ||||||||| ||||||||||||| ||| ||||||| Sbjct: 25 cataaggagcagcttgaagagcgaatggctcgtat 59
>emb|Z36546.1|PCAPOSPA3 P.ciliare (Higgins) apospory associated mRNA, 876bp Length = 876 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 520 cataaggaggagcttgaagagcgcatgtctcgtat 554 ||||||||| ||||||||||||| ||| ||||||| Sbjct: 25 cataaggagcagcttgaagagcgaatggctcgtat 59
>ref|XM_470424.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1369 Score = 44.1 bits (22), Expect = 0.48 Identities = 70/86 (81%) Strand = Plus / Plus Query: 256 ttgctcaatgatccatctataaaggagatggcagatcagattgcaagggaccctgcattc 315 |||||||||||||| |||||||||||||| || ||||| || | |||||| || ||| Sbjct: 145 ttgctcaatgatccgagcataaaggagatggcggagcagatcgccaaggacccggcgttc 204 Query: 316 aatcagatggctgagcagctacagaa 341 | ||||||| |||||||| ||||| Sbjct: 205 acggagatggcggagcagctgcagaa 230
>emb|AJ245966.1|DRE245966 Danio rerio mRNA for Pbx4/Lazarus homeodomain protein (pbx4 gene, lzr gene) Length = 2438 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 192 aggtgttcctccagctgccgctgcag 217 ||||| |||||||||||||||||||| Sbjct: 962 aggtgatcctccagctgccgctgcag 937
>gb|AC015798.7| Homo sapiens chromosome 15, clone RP11-341E5, complete sequence Length = 182107 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 326 ctgagcagctacagaaaggtgc 347 |||||||||||||||||||||| Sbjct: 124703 ctgagcagctacagaaaggtgc 124724
>gb|AC087844.6| Homo sapiens chromosome 15, clone CTD-2534H21, complete sequence Length = 177730 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 326 ctgagcagctacagaaaggtgc 347 |||||||||||||||||||||| Sbjct: 148283 ctgagcagctacagaaaggtgc 148262
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 20 ccaccgcgccgccgagctccgc 41 |||||||||||||||||||||| Sbjct: 24237226 ccaccgcgccgccgagctccgc 24237205
>dbj|AK109606.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-F03, full insert sequence Length = 1427 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 20 ccaccgcgccgccgagctccgc 41 |||||||||||||||||||||| Sbjct: 839 ccaccgcgccgccgagctccgc 818
>dbj|AK068082.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130D01, full insert sequence Length = 1360 Score = 44.1 bits (22), Expect = 0.48 Identities = 70/86 (81%) Strand = Plus / Plus Query: 256 ttgctcaatgatccatctataaaggagatggcagatcagattgcaagggaccctgcattc 315 |||||||||||||| |||||||||||||| || ||||| || | |||||| || ||| Sbjct: 184 ttgctcaatgatccgagcataaaggagatggcggagcagatcgccaaggacccggcgttc 243 Query: 316 aatcagatggctgagcagctacagaa 341 | ||||||| |||||||| ||||| Sbjct: 244 acggagatggcggagcagctgcagaa 269
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 20 ccaccgcgccgccgagctccgc 41 |||||||||||||||||||||| Sbjct: 24165432 ccaccgcgccgccgagctccgc 24165411
>emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310_C03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132733 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 20 ccaccgcgccgccgagctccgc 41 |||||||||||||||||||||| Sbjct: 121917 ccaccgcgccgccgagctccgc 121896
>emb|AL772427.4|CNS08CA5 Oryza sativa chromosome 12, . BAC OJ1260_B01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135793 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 20 ccaccgcgccgccgagctccgc 41 |||||||||||||||||||||| Sbjct: 14000 ccaccgcgccgccgagctccgc 13979
>ref|XM_527135.1| PREDICTED: Pan troglodytes LOC471757 (LOC471757), mRNA Length = 972 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 ctccagctgccgctgcaggct 220 ||||||||||||||||||||| Sbjct: 756 ctccagctgccgctgcaggct 736
>gb|BC000745.2| Homo sapiens MAX dimerization protein 3, mRNA (cDNA clone MGC:2383 IMAGE:2821596), complete cds Length = 1082 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 ctccagctgccgctgcaggct 220 ||||||||||||||||||||| Sbjct: 455 ctccagctgccgctgcaggct 435
>gb|BC041690.1| Homo sapiens MAX dimerization protein 3, mRNA (cDNA clone IMAGE:5240341), containing frame-shift errors Length = 1926 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 ctccagctgccgctgcaggct 220 ||||||||||||||||||||| Sbjct: 1258 ctccagctgccgctgcaggct 1238
>gb|BC032586.1| Homo sapiens MAX dimerization protein 3, mRNA (cDNA clone IMAGE:5500679), containing frame-shift errors Length = 1154 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 ctccagctgccgctgcaggct 220 ||||||||||||||||||||| Sbjct: 470 ctccagctgccgctgcaggct 450
>gb|AC146507.2| Homo sapiens chromosome 5 clone CTD-2301A4, complete sequence Length = 144503 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 200 ctccagctgccgctgcaggct 220 ||||||||||||||||||||| Sbjct: 73678 ctccagctgccgctgcaggct 73698
>ref|XM_860540.1| PREDICTED: Canis familiaris similar to MAX dimerization protein 3, transcript variant 2 (LOC489093), mRNA Length = 979 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 ctccagctgccgctgcaggct 220 ||||||||||||||||||||| Sbjct: 375 ctccagctgccgctgcaggct 355
>ref|XM_546209.2| PREDICTED: Canis familiaris similar to MAX dimerization protein 3, transcript variant 1 (LOC489093), mRNA Length = 1009 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 ctccagctgccgctgcaggct 220 ||||||||||||||||||||| Sbjct: 405 ctccagctgccgctgcaggct 385
>ref|NM_031300.2| Homo sapiens MAX dimerization protein 3 (MXD3), mRNA Length = 1082 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 ctccagctgccgctgcaggct 220 ||||||||||||||||||||| Sbjct: 455 ctccagctgccgctgcaggct 435
>gb|AC108734.10| Homo sapiens 3 BAC RP11-259P15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 125990 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 gctgagcagctacagaaaggt 345 ||||||||||||||||||||| Sbjct: 83386 gctgagcagctacagaaaggt 83366
>emb|AL833959.1|HSM805173 Homo sapiens mRNA; cDNA DKFZp434F1815 (from clone DKFZp434F1815) Length = 2139 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 ctccagctgccgctgcaggct 220 ||||||||||||||||||||| Sbjct: 1512 ctccagctgccgctgcaggct 1492
>emb|BX914220.7| Zebrafish DNA sequence from clone DKEYP-101F3 in linkage group 6, complete sequence Length = 94202 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 498 ggaaaacttgaccagtccaac 518 ||||||||||||||||||||| Sbjct: 46374 ggaaaacttgaccagtccaac 46394
>emb|CR626344.1| full-length cDNA clone CS0DD009YK07 of Neuroblastoma Cot 50-normalized of Homo sapiens (human) Length = 1005 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 ctccagctgccgctgcaggct 220 ||||||||||||||||||||| Sbjct: 465 ctccagctgccgctgcaggct 445
>emb|CR613684.1| full-length cDNA clone CS0DD001YD18 of Neuroblastoma Cot 50-normalized of Homo sapiens (human) Length = 1014 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 ctccagctgccgctgcaggct 220 ||||||||||||||||||||| Sbjct: 420 ctccagctgccgctgcaggct 400
>dbj|AK092842.1| Homo sapiens cDNA FLJ35523 fis, clone SPLEN2001503 Length = 2560 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 ctccagctgccgctgcaggct 220 ||||||||||||||||||||| Sbjct: 183 ctccagctgccgctgcaggct 163
>dbj|AK057034.1| Homo sapiens cDNA FLJ32472 fis, clone SKNMC2000356, highly similar to Mus musculus Max-interacting transcriptional repressor (Mad3) mRNA Length = 2269 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 ctccagctgccgctgcaggct 220 ||||||||||||||||||||| Sbjct: 473 ctccagctgccgctgcaggct 453
>emb|CR596072.1| full-length cDNA clone CS0DF021YP10 of Fetal brain of Homo sapiens (human) Length = 2279 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 ctccagctgccgctgcaggct 220 ||||||||||||||||||||| Sbjct: 1253 ctccagctgccgctgcaggct 1233
>emb|CR595562.1| full-length cDNA clone CS0DB009YI06 of Neuroblastoma Cot 10-normalized of Homo sapiens (human) Length = 1465 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 ctccagctgccgctgcaggct 220 ||||||||||||||||||||| Sbjct: 884 ctccagctgccgctgcaggct 864
>gb|AC112170.2| Homo sapiens chromosome 5 clone CTD-2018G4, complete sequence Length = 76631 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 ctccagctgccgctgcaggct 220 ||||||||||||||||||||| Sbjct: 73338 ctccagctgccgctgcaggct 73318
>gb|AC110005.2| Homo sapiens chromosome 5 clone RP11-265K23, complete sequence Length = 184157 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 ctccagctgccgctgcaggct 220 ||||||||||||||||||||| Sbjct: 67577 ctccagctgccgctgcaggct 67557
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 23 ccgcgccgccgagctccgcctccggccga 51 |||||||||||| ||||||||||||||| Sbjct: 3652695 ccgcgccgccgaattccgcctccggccga 3652667
>emb|BX649404.8| Zebrafish DNA sequence from clone CH211-285O15 in linkage group 22, complete sequence Length = 154434 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 242 cttctatgcaaagtttgctcaatga 266 |||||||||||||||| |||||||| Sbjct: 96890 cttctatgcaaagttttctcaatga 96914
>gb|AY107770.1| Zea mays PCO087426 mRNA sequence Length = 1494 Score = 42.1 bits (21), Expect = 1.9 Identities = 54/65 (83%) Strand = Plus / Plus Query: 277 aaggagatggcagatcagattgcaagggaccctgcattcaatcagatggctgagcagcta 336 |||||||||||||| ||||| || | |||||| || |||| ||||||| |||||||| Sbjct: 276 aaggagatggcagagcagatcgccaaggacccggcgttcacggagatggcggagcagctg 335 Query: 337 cagaa 341 ||||| Sbjct: 336 cagaa 340
>ref|XM_482561.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1675 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ccgcgccgccgagctccgcc 42 |||||||||||||||||||| Sbjct: 452 ccgcgccgccgagctccgcc 433
>ref|XM_468465.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2914 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 ctctcctcccccaccgcgccgccg 33 |||||||| ||||||||||||||| Sbjct: 612 ctctcctcgcccaccgcgccgccg 635
>ref|XM_507063.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C04.8 mRNA Length = 2935 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 ctctcctcccccaccgcgccgccg 33 |||||||| ||||||||||||||| Sbjct: 613 ctctcctcgcccaccgcgccgccg 636
>gb|AC104711.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1320_D10, complete sequence Length = 134183 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 cctccagctgccgctgcagg 218 |||||||||||||||||||| Sbjct: 26541 cctccagctgccgctgcagg 26522
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.6 Identities = 56/68 (82%) Strand = Plus / Plus Query: 274 ataaaggagatggcagatcagattgcaagggaccctgcattcaatcagatggctgagcag 333 |||||||||||||| || ||||| || | |||||| || |||| ||||||| |||||| Sbjct: 35558376 ataaaggagatggcggagcagatcgccaaggacccggcgttcacggagatggcggagcag 35558435 Query: 334 ctacagaa 341 || ||||| Sbjct: 35558436 ctgcagaa 35558443
>gb|AC125064.6| Mus musculus BAC clone RP23-430F7 from chromosome 14, complete sequence Length = 188477 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 498 ggaaaacttgaccagtccaa 517 |||||||||||||||||||| Sbjct: 138913 ggaaaacttgaccagtccaa 138932
>gb|AC129224.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0029P13, complete sequence Length = 158506 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 aaggagatggcagatcagat 296 |||||||||||||||||||| Sbjct: 77241 aaggagatggcagatcagat 77260
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 19 cccaccgcgccgccgagctccgcc 42 |||||||||||||||| ||||||| Sbjct: 5108782 cccaccgcgccgccgatctccgcc 5108759
>ref|XM_387088.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG06912.1) partial mRNA Length = 4857 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 ctataaaggagatggcagat 291 |||||||||||||||||||| Sbjct: 2174 ctataaaggagatggcagat 2193
>ref|XM_801911.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053511823.14) partial mRNA Length = 3388 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 3320 tcctccagctgccgctgcag 3301 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 3215 tcctccagctgccgctgcag 3196 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 3110 tcctccagctgccgctgcag 3091 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 3005 tcctccagctgccgctgcag 2986 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 2900 tcctccagctgccgctgcag 2881 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 2795 tcctccagctgccgctgcag 2776 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 2690 tcctccagctgccgctgcag 2671 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 2585 tcctccagctgccgctgcag 2566 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 2480 tcctccagctgccgctgcag 2461 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 2375 tcctccagctgccgctgcag 2356 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 2270 tcctccagctgccgctgcag 2251 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 2165 tcctccagctgccgctgcag 2146 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 2060 tcctccagctgccgctgcag 2041 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 1955 tcctccagctgccgctgcag 1936 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 1850 tcctccagctgccgctgcag 1831
>ref|XM_811656.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053511821.179) partial mRNA Length = 3718 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 2196 tcctccagctgccgctgcag 2177 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 1986 tcctccagctgccgctgcag 1967 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 1881 tcctccagctgccgctgcag 1862 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 1776 tcctccagctgccgctgcag 1757 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 1566 tcctccagctgccgctgcag 1547 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 1356 tcctccagctgccgctgcag 1337 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 1146 tcctccagctgccgctgcag 1127 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 1041 tcctccagctgccgctgcag 1022 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 936 tcctccagctgccgctgcag 917 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 831 tcctccagctgccgctgcag 812 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 726 tcctccagctgccgctgcag 707 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 621 tcctccagctgccgctgcag 602 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 516 tcctccagctgccgctgcag 497 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 411 tcctccagctgccgctgcag 392 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 306 tcctccagctgccgctgcag 287 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 201 tcctccagctgccgctgcag 182 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tcctccagctgccgctgcag 217 |||||||||||||||||||| Sbjct: 96 tcctccagctgccgctgcag 77
>ref|XM_652063.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (4.t00066) partial mRNA Length = 519 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 389 atcaatacattgaaaaaatgcaaa 412 ||||||||||||||||||| |||| Sbjct: 434 atcaatacattgaaaaaattcaaa 457
>gb|AC155344.1| Brassica rapa subsp. pekinensis clone KBrH080A08, complete sequence Length = 110038 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 tcaaggtgttcctccagctg 208 |||||||||||||||||||| Sbjct: 45119 tcaaggtgttcctccagctg 45138
>ref|XM_793038.1| PREDICTED: Strongylocentrotus purpuratus similar to RAN binding protein 2 (LOC593568), mRNA Length = 2994 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 193 ggtgttcctccagctgccgctgcaggct 220 |||| |||||||||||| |||||||||| Sbjct: 1583 ggtgatcctccagctgctgctgcaggct 1556
>gb|AC008543.9| Homo sapiens chromosome 19 clone CTC-499B15, complete sequence Length = 231247 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 atcaatacattgaaaaaatg 408 |||||||||||||||||||| Sbjct: 32823 atcaatacattgaaaaaatg 32842
>gb|AC154127.2| Ornithorhynchus anatinus BAC clone OABb-20A1 from chromosome unknown, complete sequence Length = 188107 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 cctccagctgccgctgcagg 218 |||||||||||||||||||| Sbjct: 138477 cctccagctgccgctgcagg 138496
>gb|AC160981.2| Mus musculus BAC clone RP23-363D11 from chromosome 9, complete sequence Length = 175606 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 agatggctgagcagctacag 339 |||||||||||||||||||| Sbjct: 141727 agatggctgagcagctacag 141708
>gb|AY036888.1| Brassica napus MADS-box protein (FLC1) mRNA, complete cds Length = 845 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 tcaaggtgttcctccagctg 208 |||||||||||||||||||| Sbjct: 441 tcaaggtgttcctccagctg 422
>emb|BX296532.7| Zebrafish DNA sequence from clone CH211-281C19 in linkage group 24, complete sequence Length = 155029 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 aatacattgaaaaaatgcaa 411 |||||||||||||||||||| Sbjct: 41460 aatacattgaaaaaatgcaa 41479
>gb|AC154586.2| Mus musculus BAC clone RP23-362L12 from chromosome 16, complete sequence Length = 224155 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 tttcttctatgcaaagtttg 258 |||||||||||||||||||| Sbjct: 212480 tttcttctatgcaaagtttg 212461
>dbj|AK043628.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830013O05 product:Hypothetical tyrosine protein kinase/serine/threonine protein kinase/eukaryotic protein kinase containing protein, full insert sequence Length = 4630 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 agatggctgagcagctacag 339 |||||||||||||||||||| Sbjct: 3380 agatggctgagcagctacag 3399
>dbj|AK043477.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730098P15 product:hypothetical protein, full insert sequence Length = 2639 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 agatggctgagcagctacag 339 |||||||||||||||||||| Sbjct: 95 agatggctgagcagctacag 114
>emb|AL114769.1|CNS01BW9 Botrytis cinerea strain T4 cDNA library Length = 636 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 521 ataaggaggagcttgaagag 540 |||||||||||||||||||| Sbjct: 119 ataaggaggagcttgaagag 100
>emb|AL111439.1|CNS019BR Botrytis cinerea strain T4 cDNA library Length = 720 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 521 ataaggaggagcttgaagag 540 |||||||||||||||||||| Sbjct: 112 ataaggaggagcttgaagag 93
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 aaggagatggcagatcagat 296 |||||||||||||||||||| Sbjct: 25350228 aaggagatggcagatcagat 25350247
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 cctccagctgccgctgcagg 218 |||||||||||||||||||| Sbjct: 16527802 cctccagctgccgctgcagg 16527783
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.6 Identities = 56/68 (82%) Strand = Plus / Plus Query: 274 ataaaggagatggcagatcagattgcaagggaccctgcattcaatcagatggctgagcag 333 |||||||||||||| || ||||| || | |||||| || |||| ||||||| |||||| Sbjct: 35648448 ataaaggagatggcggagcagatcgccaaggacccggcgttcacggagatggcggagcag 35648507 Query: 334 ctacagaa 341 || ||||| Sbjct: 35648508 ctgcagaa 35648515
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 ctctcctcccccaccgcgccgccg 33 |||||||| ||||||||||||||| Sbjct: 35381977 ctctcctcgcccaccgcgccgccg 35382000
>emb|BX784022.6| Zebrafish DNA sequence from clone CH211-152C8 in linkage group 18, complete sequence Length = 153244 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 aatacattgaaaaaatgcaa 411 |||||||||||||||||||| Sbjct: 41347 aatacattgaaaaaatgcaa 41366
>dbj|AK222579.1| Homo sapiens mRNA for MAX dimerization protein 3 variant, clone: CAS03507 Length = 1079 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 ctccagctgccgctgcaggc 219 |||||||||||||||||||| Sbjct: 471 ctccagctgccgctgcaggc 452
>ref|XM_224620.3| PREDICTED: Rattus norvegicus similar to Ankyrin repeat domain protein 28 (LOC306264), mRNA Length = 5203 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ttcctccagctgccgctgca 216 |||||||||||||||||||| Sbjct: 1305 ttcctccagctgccgctgca 1286
>gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genomic sequence, complete sequence Length = 145290 Score = 40.1 bits (20), Expect = 7.6 Identities = 56/68 (82%) Strand = Plus / Plus Query: 274 ataaaggagatggcagatcagattgcaagggaccctgcattcaatcagatggctgagcag 333 |||||||||||||| || ||||| || | |||||| || |||| ||||||| |||||| Sbjct: 91339 ataaaggagatggcggagcagatcgccaaggacccggcgttcacggagatggcggagcag 91398 Query: 334 ctacagaa 341 || ||||| Sbjct: 91399 ctgcagaa 91406
>gb|AY115678.1| Brassica rapa FLC1 (FLC1) gene, exons 2 through 7 and partial cds Length = 1651 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 tcaaggtgttcctccagctg 208 |||||||||||||||||||| Sbjct: 675 tcaaggtgttcctccagctg 656
>gb|AY115674.1| Brassica oleracea FLC1 (FLC1) gene, exons 2 through 7 and partial cds Length = 1395 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 tcaaggtgttcctccagctg 208 |||||||||||||||||||| Sbjct: 690 tcaaggtgttcctccagctg 671
>emb|BX470088.11| Zebrafish DNA sequence from clone DKEY-171E12 in linkage group 7, complete sequence Length = 102546 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 cagggtgcaggagaacaggg 368 |||||||||||||||||||| Sbjct: 73726 cagggtgcaggagaacaggg 73707
>gb|AC167140.1| Mus musculus BAC clone RP24-482O17 from chromosome 14, complete sequence Length = 143541 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 498 ggaaaacttgaccagtccaa 517 |||||||||||||||||||| Sbjct: 136636 ggaaaacttgaccagtccaa 136617
>dbj|AP004026.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1136_C04 Length = 103194 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 ctctcctcccccaccgcgccgccg 33 |||||||| ||||||||||||||| Sbjct: 42525 ctctcctcgcccaccgcgccgccg 42548
>dbj|BS000222.1| Pan troglodytes chromosome 22 clone:RP43-111J12, map 22, complete sequences Length = 189474 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 gctctctcctcccccaccgc 26 |||||||||||||||||||| Sbjct: 153031 gctctctcctcccccaccgc 153050
>dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0413H11 Length = 147655 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 ccgcgccgccgagctccgcc 42 |||||||||||||||||||| Sbjct: 55564 ccgcgccgccgagctccgcc 55583
>dbj|AK099915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116F10, full insert sequence Length = 2913 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 ctctcctcccccaccgcgccgccg 33 |||||||| ||||||||||||||| Sbjct: 613 ctctcctcgcccaccgcgccgccg 636
>dbj|AK074002.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076B20, full insert sequence Length = 3255 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 aaggagatggcagatcagat 296 |||||||||||||||||||| Sbjct: 758 aaggagatggcagatcagat 777
>dbj|AK070338.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049D17, full insert sequence Length = 1763 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ccgcgccgccgagctccgcc 42 |||||||||||||||||||| Sbjct: 451 ccgcgccgccgagctccgcc 432
>dbj|AK069544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022A15, full insert sequence Length = 2935 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 ctctcctcccccaccgcgccgccg 33 |||||||| ||||||||||||||| Sbjct: 613 ctctcctcgcccaccgcgccgccg 636
>gb|AC121101.8| Mus musculus chromosome 8, clone RP24-511A8, complete sequence Length = 158957 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 462 tgctcttatgcaggatcctg 481 |||||||||||||||||||| Sbjct: 127980 tgctcttatgcaggatcctg 127961
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 aaggagatggcagatcagat 296 |||||||||||||||||||| Sbjct: 25668898 aaggagatggcagatcagat 25668917
>gb|AC149346.2| Phakopsora pachyrhizi clone JGIAFNA-33E14, complete sequence Length = 38941 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 gtgttcctccagctgccgct 213 |||||||||||||||||||| Sbjct: 7434 gtgttcctccagctgccgct 7453
>emb|AL591582.32| Mouse DNA sequence from clone RP23-403P3 on chromosome 12, complete sequence Length = 168814 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ctgagcgctctctcctcccc 20 |||||||||||||||||||| Sbjct: 10604 ctgagcgctctctcctcccc 10585
>emb|AL162632.4|CNS01RHX Human chromosome 14 DNA sequence BAC R-454K7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 161417 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 agcagctacagaaaggtgct 348 |||||||||||||||||||| Sbjct: 59941 agcagctacagaaaggtgct 59960 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,023,638 Number of Sequences: 3902068 Number of extensions: 5023638 Number of successful extensions: 101412 Number of sequences better than 10.0: 104 Number of HSP's better than 10.0 without gapping: 105 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100730 Number of HSP's gapped (non-prelim): 674 length of query: 557 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 534 effective length of database: 17,143,297,704 effective search space: 9154520973936 effective search space used: 9154520973936 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)