ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart45c08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474673.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1524 Score = 216 bits (109), Expect = 6e-53 Identities = 262/313 (83%) Strand = Plus / Plus Query: 150 ggcctccaggcccatggcgcctccccttgctcggaagcctccaccacgtcctcacgtcgc 209 |||||||||| |||||| |||||||||| |||| |||||| |||| ||||| ||||| Sbjct: 101 ggcctccagggccatggaacctccccttggtcggcggcctcctccacctcctccggtcgc 160 Query: 210 agccgcatgtcgccctccgggacctggccaagaagcacggcccggtcatgtacctccggt 269 | ||||| ||||| ||||| || || |||| ||| |||||||||| |||| ||||||| Sbjct: 161 atccgcaggtcgcgctccgcgagctcgccagcaagtacggcccggtgatgttcctccgga 220 Query: 270 tcggccagatcgacaccgtcgtcatctcatcgccggcggcggcgcaggaggtgctccggg 329 | || ||||||||||| |||||| |||||||||||||||||||||||||||||||||| | Sbjct: 221 tggggcagatcgacacggtcgtcgtctcatcgccggcggcggcgcaggaggtgctccgcg 280 Query: 330 acaaggaccttgccttcgcgtcacggcccaacatcctggtctcagagatcttctgctacg 389 |||||||| | |||||||| ||||| | | |||| ||||| |||||||||||||||| Sbjct: 281 acaaggacgtcatgttcgcgtcgcggccgagcctcctcgtctcggagatcttctgctacg 340 Query: 390 gaggtcgcgacgtcgtcctcgcgccctacggcccctactggcggacgacgcgcaagctct 449 | |||||||| | |||||||||||||| |||||||||||| | ||||||||||| Sbjct: 341 acaacctcgacgtcggcttcgcgccctacggcgcctactggcggatgctgcgcaagctct 400 Query: 450 gcacgatggagct 462 ||||| ||||||| Sbjct: 401 gcacggtggagct 413
>emb|AL662936.4|OSJN00137 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0052P16, complete sequence Length = 155702 Score = 216 bits (109), Expect = 6e-53 Identities = 262/313 (83%) Strand = Plus / Plus Query: 150 ggcctccaggcccatggcgcctccccttgctcggaagcctccaccacgtcctcacgtcgc 209 |||||||||| |||||| |||||||||| |||| |||||| |||| ||||| ||||| Sbjct: 150518 ggcctccagggccatggaacctccccttggtcggcggcctcctccacctcctccggtcgc 150577 Query: 210 agccgcatgtcgccctccgggacctggccaagaagcacggcccggtcatgtacctccggt 269 | ||||| ||||| ||||| || || |||| ||| |||||||||| |||| ||||||| Sbjct: 150578 atccgcaggtcgcgctccgcgagctcgccagcaagtacggcccggtgatgttcctccgga 150637 Query: 270 tcggccagatcgacaccgtcgtcatctcatcgccggcggcggcgcaggaggtgctccggg 329 | || ||||||||||| |||||| |||||||||||||||||||||||||||||||||| | Sbjct: 150638 tggggcagatcgacacggtcgtcgtctcatcgccggcggcggcgcaggaggtgctccgcg 150697 Query: 330 acaaggaccttgccttcgcgtcacggcccaacatcctggtctcagagatcttctgctacg 389 |||||||| | |||||||| ||||| | | |||| ||||| |||||||||||||||| Sbjct: 150698 acaaggacgtcatgttcgcgtcgcggccgagcctcctcgtctcggagatcttctgctacg 150757 Query: 390 gaggtcgcgacgtcgtcctcgcgccctacggcccctactggcggacgacgcgcaagctct 449 | |||||||| | |||||||||||||| |||||||||||| | ||||||||||| Sbjct: 150758 acaacctcgacgtcggcttcgcgccctacggcgcctactggcggatgctgcgcaagctct 150817 Query: 450 gcacgatggagct 462 ||||| ||||||| Sbjct: 150818 gcacggtggagct 150830
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 216 bits (109), Expect = 6e-53 Identities = 262/313 (83%) Strand = Plus / Plus Query: 150 ggcctccaggcccatggcgcctccccttgctcggaagcctccaccacgtcctcacgtcgc 209 |||||||||| |||||| |||||||||| |||| |||||| |||| ||||| ||||| Sbjct: 5449869 ggcctccagggccatggaacctccccttggtcggcggcctcctccacctcctccggtcgc 5449928 Query: 210 agccgcatgtcgccctccgggacctggccaagaagcacggcccggtcatgtacctccggt 269 | ||||| ||||| ||||| || || |||| ||| |||||||||| |||| ||||||| Sbjct: 5449929 atccgcaggtcgcgctccgcgagctcgccagcaagtacggcccggtgatgttcctccgga 5449988 Query: 270 tcggccagatcgacaccgtcgtcatctcatcgccggcggcggcgcaggaggtgctccggg 329 | || ||||||||||| |||||| |||||||||||||||||||||||||||||||||| | Sbjct: 5449989 tggggcagatcgacacggtcgtcgtctcatcgccggcggcggcgcaggaggtgctccgcg 5450048 Query: 330 acaaggaccttgccttcgcgtcacggcccaacatcctggtctcagagatcttctgctacg 389 |||||||| | |||||||| ||||| | | |||| ||||| |||||||||||||||| Sbjct: 5450049 acaaggacgtcatgttcgcgtcgcggccgagcctcctcgtctcggagatcttctgctacg 5450108 Query: 390 gaggtcgcgacgtcgtcctcgcgccctacggcccctactggcggacgacgcgcaagctct 449 | |||||||| | |||||||||||||| |||||||||||| | ||||||||||| Sbjct: 5450109 acaacctcgacgtcggcttcgcgccctacggcgcctactggcggatgctgcgcaagctct 5450168 Query: 450 gcacgatggagct 462 ||||| ||||||| Sbjct: 5450169 gcacggtggagct 5450181 Score = 194 bits (98), Expect = 2e-46 Identities = 260/314 (82%) Strand = Plus / Minus Query: 149 cggcctccaggcccatggcgcctccccttgctcggaagcctccaccacgtcctcacgtcg 208 |||||||| || |||||| |||||||||| |||| |||||| |||| ||||| |||| Sbjct: 5299080 cggcctccggggccatggaacctccccttggtcggcggcctcctccacctcctccggtcg 5299021 Query: 209 cagccgcatgtcgccctccgggacctggccaagaagcacggcccggtcatgtacctccgg 268 || ||||| ||||| ||||| ||||| ||| ||| |||||||||| |||| ||| ||| Sbjct: 5299020 caaccgcaggtcgcactccgcgacctcgccggcaagtacggcccggtgatgttcctgcgg 5298961 Query: 269 ttcggccagatcgacaccgtcgtcatctcatcgccggcggcggcgcaggaggtgctccgg 328 || ||| | ||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 5298960 acggggcaggtggacaccgtcgtgatctcctcgccggcggcggcgcaggaggtgctccgc 5298901 Query: 329 gacaaggaccttgccttcgcgtcacggcccaacatcctggtctcagagatcttctgctac 388 ||||||||| | |||||||||| ||||| | | |||| ||||| ||||||||||||||| Sbjct: 5298900 gacaaggacgtcaccttcgcgtcgcggccgagcctcctcgtctcggagatcttctgctac 5298841 Query: 389 ggaggtcgcgacgtcgtcctcgcgccctacggcccctactggcggacgacgcgcaagctc 448 || | |||| ||| | |||||||||||||| |||||||||||| | |||||||||| Sbjct: 5298840 ggcaacctcgacatcggcttcgcgccctacggcgcctactggcggatgctgcgcaagctc 5298781 Query: 449 tgcacgatggagct 462 |||||| ||||||| Sbjct: 5298780 tgcacggtggagct 5298767
>dbj|AK071546.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100C12, full insert sequence Length = 1750 Score = 216 bits (109), Expect = 6e-53 Identities = 262/313 (83%) Strand = Plus / Plus Query: 150 ggcctccaggcccatggcgcctccccttgctcggaagcctccaccacgtcctcacgtcgc 209 |||||||||| |||||| |||||||||| |||| |||||| |||| ||||| ||||| Sbjct: 165 ggcctccagggccatggaacctccccttggtcggcggcctcctccacctcctccggtcgc 224 Query: 210 agccgcatgtcgccctccgggacctggccaagaagcacggcccggtcatgtacctccggt 269 | ||||| ||||| ||||| || || |||| ||| |||||||||| |||| ||||||| Sbjct: 225 atccgcaggtcgcgctccgcgagctcgccagcaagtacggcccggtgatgttcctccgga 284 Query: 270 tcggccagatcgacaccgtcgtcatctcatcgccggcggcggcgcaggaggtgctccggg 329 | || ||||||||||| |||||| |||||||||||||||||||||||||||||||||| | Sbjct: 285 tggggcagatcgacacggtcgtcgtctcatcgccggcggcggcgcaggaggtgctccgcg 344 Query: 330 acaaggaccttgccttcgcgtcacggcccaacatcctggtctcagagatcttctgctacg 389 |||||||| | |||||||| ||||| | | |||| ||||| |||||||||||||||| Sbjct: 345 acaaggacgtcatgttcgcgtcgcggccgagcctcctcgtctcggagatcttctgctacg 404 Query: 390 gaggtcgcgacgtcgtcctcgcgccctacggcccctactggcggacgacgcgcaagctct 449 | |||||||| | |||||||||||||| |||||||||||| | ||||||||||| Sbjct: 405 acaacctcgacgtcggcttcgcgccctacggcgcctactggcggatgctgcgcaagctct 464 Query: 450 gcacgatggagct 462 ||||| ||||||| Sbjct: 465 gcacggtggagct 477
>emb|AL662934.3|OSJN00136 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027O01, complete sequence Length = 150283 Score = 216 bits (109), Expect = 6e-53 Identities = 262/313 (83%) Strand = Plus / Plus Query: 150 ggcctccaggcccatggcgcctccccttgctcggaagcctccaccacgtcctcacgtcgc 209 |||||||||| |||||| |||||||||| |||| |||||| |||| ||||| ||||| Sbjct: 4499 ggcctccagggccatggaacctccccttggtcggcggcctcctccacctcctccggtcgc 4558 Query: 210 agccgcatgtcgccctccgggacctggccaagaagcacggcccggtcatgtacctccggt 269 | ||||| ||||| ||||| || || |||| ||| |||||||||| |||| ||||||| Sbjct: 4559 atccgcaggtcgcgctccgcgagctcgccagcaagtacggcccggtgatgttcctccgga 4618 Query: 270 tcggccagatcgacaccgtcgtcatctcatcgccggcggcggcgcaggaggtgctccggg 329 | || ||||||||||| |||||| |||||||||||||||||||||||||||||||||| | Sbjct: 4619 tggggcagatcgacacggtcgtcgtctcatcgccggcggcggcgcaggaggtgctccgcg 4678 Query: 330 acaaggaccttgccttcgcgtcacggcccaacatcctggtctcagagatcttctgctacg 389 |||||||| | |||||||| ||||| | | |||| ||||| |||||||||||||||| Sbjct: 4679 acaaggacgtcatgttcgcgtcgcggccgagcctcctcgtctcggagatcttctgctacg 4738 Query: 390 gaggtcgcgacgtcgtcctcgcgccctacggcccctactggcggacgacgcgcaagctct 449 | |||||||| | |||||||||||||| |||||||||||| | ||||||||||| Sbjct: 4739 acaacctcgacgtcggcttcgcgccctacggcgcctactggcggatgctgcgcaagctct 4798 Query: 450 gcacgatggagct 462 ||||| ||||||| Sbjct: 4799 gcacggtggagct 4811
>dbj|AK071864.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023124B03, full insert sequence Length = 1780 Score = 194 bits (98), Expect = 2e-46 Identities = 260/314 (82%) Strand = Plus / Plus Query: 149 cggcctccaggcccatggcgcctccccttgctcggaagcctccaccacgtcctcacgtcg 208 |||||||| || |||||| |||||||||| |||| |||||| |||| ||||| |||| Sbjct: 174 cggcctccggggccatggaacctccccttggtcggcggcctcctccacctcctccggtcg 233 Query: 209 cagccgcatgtcgccctccgggacctggccaagaagcacggcccggtcatgtacctccgg 268 || ||||| ||||| ||||| ||||| ||| ||| |||||||||| |||| ||| ||| Sbjct: 234 caaccgcaggtcgcactccgcgacctcgccggcaagtacggcccggtgatgttcctgcgg 293 Query: 269 ttcggccagatcgacaccgtcgtcatctcatcgccggcggcggcgcaggaggtgctccgg 328 || ||| | ||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 294 acggggcaggtggacaccgtcgtgatctcctcgccggcggcggcgcaggaggtgctccgc 353 Query: 329 gacaaggaccttgccttcgcgtcacggcccaacatcctggtctcagagatcttctgctac 388 ||||||||| | |||||||||| ||||| | | |||| ||||| ||||||||||||||| Sbjct: 354 gacaaggacgtcaccttcgcgtcgcggccgagcctcctcgtctcggagatcttctgctac 413 Query: 389 ggaggtcgcgacgtcgtcctcgcgccctacggcccctactggcggacgacgcgcaagctc 448 || | |||| ||| | |||||||||||||| |||||||||||| | |||||||||| Sbjct: 414 ggcaacctcgacatcggcttcgcgccctacggcgcctactggcggatgctgcgcaagctc 473 Query: 449 tgcacgatggagct 462 |||||| ||||||| Sbjct: 474 tgcacggtggagct 487
>gb|AF029857.1|AF029857 Sorghum bicolor cytochrome P450 CYP99A1 (CYP99A1) mRNA, partial cds Length = 1689 Score = 178 bits (90), Expect = 1e-41 Identities = 165/190 (86%) Strand = Plus / Plus Query: 148 gcggcctccaggcccatggcgcctccccttgctcggaagcctccaccacgtcctcacgtc 207 |||||| |||||||||||||| ||||||||| |||||| ||||| |||| || ||| || Sbjct: 78 gcggccaccaggcccatggcgtctccccttgatcggaaacctcctccacctcgccacctc 137 Query: 208 gcagccgcatgtcgccctccgggacctggccaagaagcacggcccggtcatgtacctccg 267 |||||||| ||||| || ||||||||||| | ||||||||| || ||||||||||| || Sbjct: 138 ccagccgcacgtcgcgctacgggacctggcgatgaagcacgggcccgtcatgtacctgcg 197 Query: 268 gttcggccagatcgacaccgtcgtcatctcatcgccggcggcggcgcaggaggtgctccg 327 | |||||| ||||| ||||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 198 tctgggccaggtcgacgccgtcgtgatctcctcgccggcggcggcgcaggaggtgctccg 257 Query: 328 ggacaaggac 337 |||||||||| Sbjct: 258 ggacaaggac 267
>gb|AF321864.1|AF321864 Lolium rigidum clone Lol-5-v putative cytochrome P450 mRNA, complete cds Length = 1757 Score = 155 bits (78), Expect = 2e-34 Identities = 279/346 (80%) Strand = Plus / Plus Query: 180 tcggaagcctccaccacgtcctcacgtcgcagccgcatgtcgccctccgggacctggcca 239 |||| ||||||||||| | || ||||||||||||||||| || |||||| ||||||||| Sbjct: 149 tcgggagcctccaccatctgctaacgtcgcagccgcatgttgctctccggaacctggcca 208 Query: 240 agaagcacggcccggtcatgtacctccggttcggccagatcgacaccgtcgtcatctcat 299 ||| |||||||||||| ||| || ||| | |||||| |||| ||||||| |||| | Sbjct: 209 agacgcacggcccggtgatgcgtctacggctgggccaggtcgaggccgtcgtggtctcct 268 Query: 300 cgccggcggcggcgcaggaggtgctccgggacaaggaccttgccttcgcgtcacggccca 359 || ||||||||||||| ||||||||||| ||||| |||||| |||| ||||| ||||| | Sbjct: 269 cgtcggcggcggcgcaagaggtgctccgcgacaatgacctttcctttgcgtcgcggccga 328 Query: 360 acatcctggtctcagagatcttctgctacggaggtcgcgacgtcgtcctcgcgccctacg 419 || |||||| | | |||||| | |||||||| | |||||| | | | |||||||||| Sbjct: 329 acctcctggccacggagatcatgtgctacggtaacctcgacgttgcctttgcgccctacg 388 Query: 420 gcccctactggcggacgacgcgcaagctctgcacgatggagctgctgagcgaacggaagg 479 || ||||||||||| || | ||||||||| | |||||||||| ||| || |||| Sbjct: 389 gcgcctactggcgggcgctgaagaagctctgcgtgctggagctgctcagctcgcgcaagg 448 Query: 480 tgcggcagttcgcgcccttcagagacagccagaccatgtccctcat 525 |||| |||||| |||| |||| |||||| |||||||||| ||||| Sbjct: 449 tgcgtcagttcaagcccgtcagggacagcgagaccatgtcgctcat 494
>gb|AF047659.1| Caenorhabditis elegans cosmid K07H8, complete sequence Length = 37923 Score = 48.1 bits (24), Expect = 0.031 Identities = 24/24 (100%) Strand = Plus / Plus Query: 179 ctcggaagcctccaccacgtcctc 202 |||||||||||||||||||||||| Sbjct: 29884 ctcggaagcctccaccacgtcctc 29907
>ref|NM_068990.2| Caenorhabditis elegans K07H8.10 (K07H8.10) mRNA, complete cds Length = 2694 Score = 48.1 bits (24), Expect = 0.031 Identities = 24/24 (100%) Strand = Plus / Minus Query: 179 ctcggaagcctccaccacgtcctc 202 |||||||||||||||||||||||| Sbjct: 275 ctcggaagcctccaccacgtcctc 252
>ref|NM_185174.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1584 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 299 tcgccggcggcggcgcaggaggtgct 324 ||||||| |||||||||||||||||| Sbjct: 289 tcgccggaggcggcgcaggaggtgct 314
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 299 tcgccggcggcggcgcaggaggtgct 324 ||||||| |||||||||||||||||| Sbjct: 35474359 tcgccggaggcggcgcaggaggtgct 35474384 Score = 40.1 bits (20), Expect = 7.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 416 tacggcccctactggcggacgacgcgcaagctctgc 451 |||||| |||||||||| | | |||||||||||||| Sbjct: 24934792 tacggcgcctactggcgcatggcgcgcaagctctgc 24934757
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 299 tcgccggcggcggcgcaggaggtgct 324 ||||||| |||||||||||||||||| Sbjct: 35564431 tcgccggaggcggcgcaggaggtgct 35564456 Score = 40.1 bits (20), Expect = 7.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 416 tacggcccctactggcggacgacgcgcaagctctgc 451 |||||| |||||||||| | | |||||||||||||| Sbjct: 25026067 tacggcgcctactggcgcatggcgcgcaagctctgc 25026032
>gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genomic sequence, complete sequence Length = 133846 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 299 tcgccggcggcggcgcaggaggtgct 324 ||||||| |||||||||||||||||| Sbjct: 13267 tcgccggaggcggcgcaggaggtgct 13242
>gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genomic sequence, complete sequence Length = 145290 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 299 tcgccggcggcggcgcaggaggtgct 324 ||||||| |||||||||||||||||| Sbjct: 7322 tcgccggaggcggcgcaggaggtgct 7347
>gb|AC108413.4| Mus musculus chromosome 8, clone RP23-472M11, complete sequence Length = 174540 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 374 gagatcttctgctacggaggt 394 ||||||||||||||||||||| Sbjct: 102492 gagatcttctgctacggaggt 102472
>ref|XM_550562.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1005 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 cgccggcggcggcgcaggagg 320 ||||||||||||||||||||| Sbjct: 266 cgccggcggcggcgcaggagg 246
>ref|NM_188354.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1743 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 303 cggcggcggcgcaggaggtgctccgggac 331 ||||||||||| ||| ||||||||||||| Sbjct: 1562 cggcggcggcggaggtggtgctccgggac 1590
>ref|XM_465852.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1614 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 246 acggcccggtcatgtacctccggttcggc 274 |||||||| |||||| ||||||||||||| Sbjct: 224 acggcccgctcatgtccctccggttcggc 252
>gb|AC163225.4| Mus musculus chromosome 8, clone RP23-319L22, complete sequence Length = 192661 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 374 gagatcttctgctacggaggt 394 ||||||||||||||||||||| Sbjct: 171248 gagatcttctgctacggaggt 171228
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.9 Identities = 69/85 (81%) Strand = Plus / Plus Query: 244 gcacggcccggtcatgtacctccggttcggccagatcgacaccgtcgtcatctcatcgcc 303 ||||||||| |||||| | ||| |||||||| || | |||||| ||| ||| ||||| Sbjct: 6631962 gcacggccccgtcatgcagctctggttcggcgaggtgcccaccgtggtcgcctcgtcgcc 6632021 Query: 304 ggcggcggcgcaggaggtgctccgg 328 || ||| ||||||||||| |||||| Sbjct: 6632022 ggaggccgcgcaggaggtcctccgg 6632046
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 cgccggcggcggcgcaggagg 320 ||||||||||||||||||||| Sbjct: 1360633 cgccggcggcggcgcaggagg 1360613 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 299 tcgccggcggcggcgcaggaggtg 322 ||||||| |||||||||||||||| Sbjct: 25638925 tcgccggaggcggcgcaggaggtg 25638948
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 246 acggcccggtcatgtacctccggttcggc 274 |||||||| |||||| ||||||||||||| Sbjct: 17905564 acggcccgctcatgtccctccggttcggc 17905592
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 303 cggcggcggcgcaggaggtgctccgggac 331 ||||||||||| ||| ||||||||||||| Sbjct: 5837053 cggcggcggcggaggtggtgctccgggac 5837025
>dbj|AP003052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0016I09 Length = 148517 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 303 cggcggcggcgcaggaggtgctccgggac 331 ||||||||||| ||| ||||||||||||| Sbjct: 40794 cggcggcggcggaggtggtgctccgggac 40766
>dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0425F02 Length = 176979 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 cgccggcggcggcgcaggagg 320 ||||||||||||||||||||| Sbjct: 69172 cgccggcggcggcgcaggagg 69152
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 536 cgcgccgccggtcggggcggccggc 560 ||||||||||||||||||| ||||| Sbjct: 5889513 cgcgccgccggtcggggcgaccggc 5889489
>dbj|AP005719.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1130E10 Length = 151606 Score = 42.1 bits (21), Expect = 1.9 Identities = 69/85 (81%) Strand = Plus / Plus Query: 244 gcacggcccggtcatgtacctccggttcggccagatcgacaccgtcgtcatctcatcgcc 303 ||||||||| |||||| | ||| |||||||| || | |||||| ||| ||| ||||| Sbjct: 24961 gcacggccccgtcatgcagctctggttcggcgaggtgcccaccgtggtcgcctcgtcgcc 25020 Query: 304 ggcggcggcgcaggaggtgctccgg 328 || ||| ||||||||||| |||||| Sbjct: 25021 ggaggccgcgcaggaggtcctccgg 25045
>dbj|AP004022.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1126_B06 Length = 99637 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 246 acggcccggtcatgtacctccggttcggc 274 |||||||| |||||| ||||||||||||| Sbjct: 40197 acggcccgctcatgtccctccggttcggc 40225
>dbj|AP005069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0654A08 Length = 154812 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 246 acggcccggtcatgtacctccggttcggc 274 |||||||| |||||| ||||||||||||| Sbjct: 145095 acggcccgctcatgtccctccggttcggc 145123
>dbj|AK109337.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-D09, full insert sequence Length = 980 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 303 cggcggcggcgcaggaggtgctccgggac 331 ||||||||||| ||| ||||||||||||| Sbjct: 587 cggcggcggcggaggtggtgctccgggac 615
>dbj|AK102200.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087E11, full insert sequence Length = 1005 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 cgccggcggcggcgcaggagg 320 ||||||||||||||||||||| Sbjct: 266 cgccggcggcggcgcaggagg 246
>dbj|AP005160.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0031C24 Length = 194111 Score = 42.1 bits (21), Expect = 1.9 Identities = 69/85 (81%) Strand = Plus / Plus Query: 244 gcacggcccggtcatgtacctccggttcggccagatcgacaccgtcgtcatctcatcgcc 303 ||||||||| |||||| | ||| |||||||| || | |||||| ||| ||| ||||| Sbjct: 144056 gcacggccccgtcatgcagctctggttcggcgaggtgcccaccgtggtcgcctcgtcgcc 144115 Query: 304 ggcggcggcgcaggaggtgctccgg 328 || ||| ||||||||||| |||||| Sbjct: 144116 ggaggccgcgcaggaggtcctccgg 144140
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 293 atctcatcgccggcggcggcg 313 ||||||||||||||||||||| Sbjct: 781945 atctcatcgccggcggcggcg 781925
>gb|AC151757.1| Ornithorhynchus anatinus chromosome UNK clone OABb-457P24, complete sequence Length = 135835 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 cagaccatgtccctcatcga 528 |||||||||||||||||||| Sbjct: 45285 cagaccatgtccctcatcga 45304
>ref|XM_469015.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1831 Score = 40.1 bits (20), Expect = 7.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 416 tacggcccctactggcggacgacgcgcaagctctgc 451 |||||| |||||||||| | | |||||||||||||| Sbjct: 373 tacggcgcctactggcgcatggcgcgcaagctctgc 408
>gb|AC115898.22| Mus musculus chromosome 7, clone RP24-444C13, complete sequence Length = 177754 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 tccaccacgtcctcacgtcgcagc 212 ||||||||| |||||||||||||| Sbjct: 13627 tccaccacgccctcacgtcgcagc 13650
>gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0024K17 map near S16403, complete sequence Length = 172238 Score = 40.1 bits (20), Expect = 7.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 416 tacggcccctactggcggacgacgcgcaagctctgc 451 |||||| |||||||||| | | |||||||||||||| Sbjct: 51195 tacggcgcctactggcgcatggcgcgcaagctctgc 51160
>gb|BC079592.1| Mus musculus protein tyrosine phosphatase, non-receptor type 5, mRNA (cDNA clone MGC:90682 IMAGE:6817360), complete cds Length = 3132 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 tccaccacgtcctcacgtcgcagc 212 ||||||||| |||||||||||||| Sbjct: 1949 tccaccacgccctcacgtcgcagc 1926
>gb|AF347067.1| Triticum aestivum sucrose-phosphate synthase 5 mRNA, partial cds Length = 1999 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 cgccggcggcggcgcaggag 319 |||||||||||||||||||| Sbjct: 864 cgccggcggcggcgcaggag 845
>ref|NM_013643.1| Mus musculus protein tyrosine phosphatase, non-receptor type 5 (Ptpn5), mRNA Length = 3141 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 tccaccacgtcctcacgtcgcagc 212 ||||||||| |||||||||||||| Sbjct: 1988 tccaccacgccctcacgtcgcagc 1965
>gb|AC113001.9| Mus musculus chromosome 7, clone RP23-184M4, complete sequence Length = 206940 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 tccaccacgtcctcacgtcgcagc 212 ||||||||| |||||||||||||| Sbjct: 147204 tccaccacgccctcacgtcgcagc 147227
>ref|XM_387367.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07191.1) partial mRNA Length = 1794 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 cctcatcgacaacgtccgcg 539 |||||||||||||||||||| Sbjct: 324 cctcatcgacaacgtccgcg 343
>gb|BC057339.1| Mus musculus protein tyrosine phosphatase, non-receptor type 5, mRNA (cDNA clone IMAGE:6815721), partial cds Length = 3309 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 tccaccacgtcctcacgtcgcagc 212 ||||||||| |||||||||||||| Sbjct: 2139 tccaccacgccctcacgtcgcagc 2116
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 agcacggcccggtcatgtac 262 |||||||||||||||||||| Sbjct: 3584006 agcacggcccggtcatgtac 3583987
>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29 Length = 293050 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 386 tacggaggtcgcgacgtcgtcctcgcgc 413 |||| |||||||||||||||||| |||| Sbjct: 109606 tacgaaggtcgcgacgtcgtcctggcgc 109579 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 cgccggtcggggcggccggc 560 |||||||||||||||||||| Sbjct: 91875 cgccggtcggggcggccggc 91856
>emb|AL672114.1|MLO672114 Mesorhizobium loti R7A symbiosis island; segment 3/4 Length = 149050 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 gaccatgtccctcatcgaca 530 |||||||||||||||||||| Sbjct: 17120 gaccatgtccctcatcgaca 17101
>emb|AJ131213.1|SCO131213 Streptomyces coelicolor A3(2) mutY (partial), sigE, cseB, cseC and lrpA genes and ORF202 and ORF277 Length = 6463 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 cgccggtcggggcggccggc 560 |||||||||||||||||||| Sbjct: 2073 cgccggtcggggcggccggc 2054
>gb|AC067931.16| Homo sapiens chromosome 8, clone RP11-642A1, complete sequence Length = 206466 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 ggcggcggcgcaggaggtgc 323 |||||||||||||||||||| Sbjct: 61917 ggcggcggcgcaggaggtgc 61936
>emb|BX571813.8| Zebrafish DNA sequence from clone DKEY-14O6 in linkage group 3, complete sequence Length = 233901 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 agctctgcacgatggagctg 463 |||||||||||||||||||| Sbjct: 8345 agctctgcacgatggagctg 8364
>emb|AL954817.9| Mouse DNA sequence from clone RP24-84L18 on chromosome 11 Contains the 5' end of the gene for a novel protein similar to human non-kinase Cdc42 effector protein SPEC2, a heterogeneous nuclear ribonucleoprotein A3 (Hnrpa3) pseudogene, three novel genes, the Hint1 gene for histidine triad nucleotide binding protein and two CpG islands, complete sequence Length = 156468 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 tcctggtctcagagatcttc 382 |||||||||||||||||||| Sbjct: 140701 tcctggtctcagagatcttc 140720
>gb|AC008735.9| Homo sapiens chromosome 19 clone CTD-2537I9, complete sequence Length = 223879 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 tgatggtgatggcgacggag 58 |||||||||||||||||||| Sbjct: 157121 tgatggtgatggcgacggag 157102
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 535 ccgcgccgccggtcggggcggccg 558 |||||| ||||||||||||||||| Sbjct: 853239 ccgcgcagccggtcggggcggccg 853216
>gb|AC104343.3| Homo sapiens chromosome 8, clone RP11-822K17, complete sequence Length = 203753 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 taaaaggcatttcaatttgt 24 |||||||||||||||||||| Sbjct: 49630 taaaaggcatttcaatttgt 49611
>gb|AF321863.1|AF321863 Lolium rigidum clone Lol-3-k putative cytochrome P450 mRNA, complete cds Length = 1832 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 244 gcacggcccggtcatgtacctccg 267 |||||||||| ||||||||||||| Sbjct: 191 gcacggcccgctcatgtacctccg 214
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 cggcggcgcaggaggtgctc 325 |||||||||||||||||||| Sbjct: 3610044 cggcggcgcaggaggtgctc 3610025
>gb|BC051975.1| Mus musculus protein tyrosine phosphatase, non-receptor type 5, mRNA (cDNA clone IMAGE:5708769), partial cds Length = 2798 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 tccaccacgtcctcacgtcgcagc 212 ||||||||| |||||||||||||| Sbjct: 1618 tccaccacgccctcacgtcgcagc 1595
>ref|NM_012154.2| Homo sapiens eukaryotic translation initiation factor 2C, 2 (EIF2C2), mRNA Length = 3567 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 ggcggcggcgcaggaggtgc 323 |||||||||||||||||||| Sbjct: 87 ggcggcggcgcaggaggtgc 68
>gb|U28217.1|MMU28217 Mus musculus protein tyrosine phosphatase STEP61 mRNA, complete cds Length = 3141 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 tccaccacgtcctcacgtcgcagc 212 ||||||||| |||||||||||||| Sbjct: 1988 tccaccacgccctcacgtcgcagc 1965
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 525 tcgacaacgtccgcgccgcc 544 |||||||||||||||||||| Sbjct: 4864493 tcgacaacgtccgcgccgcc 4864512
>dbj|AK038416.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230006G10 product:protein tyrosine phosphatase, non-receptor type 5, full insert sequence Length = 2796 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 tccaccacgtcctcacgtcgcagc 212 ||||||||| |||||||||||||| Sbjct: 1646 tccaccacgccctcacgtcgcagc 1623
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 gccaagaagcacggcccggt 255 |||||||||||||||||||| Sbjct: 6403858 gccaagaagcacggcccggt 6403877
>gb|AE004910.1| Pseudomonas aeruginosa PAO1, section 471 of 529 of the complete genome Length = 14999 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 ctcatcgccggcggcggcgc 314 |||||||||||||||||||| Sbjct: 9967 ctcatcgccggcggcggcgc 9948
>gb|AC091657.3| Rattus norvegicus strain Brown Norway clone RP31-29N16, complete sequence Length = 141898 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 agagacagccagaccatgtc 519 |||||||||||||||||||| Sbjct: 88862 agagacagccagaccatgtc 88881
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 acctggccaagaagcacggc 250 |||||||||||||||||||| Sbjct: 2609613 acctggccaagaagcacggc 2609594
>dbj|AP003571.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0458E02 Length = 154458 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 299 tcgccggcggcggcgcaggaggtg 322 ||||||| |||||||||||||||| Sbjct: 62370 tcgccggaggcggcgcaggaggtg 62393
>dbj|AK106068.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-H02, full insert sequence Length = 1775 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 299 tcgccggcggcggcgcaggaggtg 322 ||||||| |||||||||||||||| Sbjct: 297 tcgccggaggcggcgcaggaggtg 320
>dbj|AK060486.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E10, full insert sequence Length = 1815 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 299 tcgccggcggcggcgcaggaggtg 322 ||||||| |||||||||||||||| Sbjct: 311 tcgccggaggcggcgcaggaggtg 334
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 tccaccacgtcctcacgtcgcagc 212 |||||||| ||||||||||||||| Sbjct: 1001056 tccaccacttcctcacgtcgcagc 1001033
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 cggcggcggcgcaggaggtg 322 |||||||||||||||||||| Sbjct: 1819688 cggcggcggcgcaggaggtg 1819707 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,876,181 Number of Sequences: 3902068 Number of extensions: 3876181 Number of successful extensions: 89291 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 87060 Number of HSP's gapped (non-prelim): 2226 length of query: 561 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 538 effective length of database: 17,143,297,704 effective search space: 9223094164752 effective search space used: 9223094164752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
