ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart45c06 |
|---|---|
| Clone Library Name | barley_pub |
>PRS6B_SOLTU (P54778) 26S protease regulatory subunit 6B homolog| Length = 413 Score = 45.4 bits (106), Expect = 4e-05 Identities = 19/27 (70%), Positives = 24/27 (88%) Frame = +3 Query: 183 EDDDDLYGRLKSLQRHMEFVEIQEEYL 263 + +DDLY RLKSLQR +EF+EIQEEY+ Sbjct: 30 DGEDDLYARLKSLQRQLEFIEIQEEYV 56
>PRS6B_ARATH (Q9SEI4) 26S protease regulatory subunit 6B homolog (26S proteasome| AAA-ATPase subunit RPT3) (Regulatory particle triple-A ATPase subunit 3) Length = 408 Score = 44.7 bits (104), Expect = 6e-05 Identities = 18/26 (69%), Positives = 24/26 (92%) Frame = +3 Query: 186 DDDDLYGRLKSLQRHMEFVEIQEEYL 263 D++DLYGRLKSL+R +EF +IQEEY+ Sbjct: 26 DEEDLYGRLKSLERQLEFTDIQEEYV 51
>PRS6B_RAT (Q63570) 26S protease regulatory subunit 6B (TAT-binding protein 7)| (TBP-7) Length = 418 Score = 39.7 bits (91), Expect = 0.002 Identities = 16/27 (59%), Positives = 22/27 (81%) Frame = +3 Query: 183 EDDDDLYGRLKSLQRHMEFVEIQEEYL 263 ED +DLY R K LQ+ +EF+E+QEEY+ Sbjct: 35 EDLEDLYSRYKKLQQELEFLEVQEEYI 61
>PRS6B_MOUSE (P54775) 26S protease regulatory subunit 6B (MIP224)| (MB67-interacting protein) (TAT-binding protein 7) (TBP-7) (CIP21) Length = 418 Score = 39.7 bits (91), Expect = 0.002 Identities = 16/27 (59%), Positives = 22/27 (81%) Frame = +3 Query: 183 EDDDDLYGRLKSLQRHMEFVEIQEEYL 263 ED +DLY R K LQ+ +EF+E+QEEY+ Sbjct: 35 EDLEDLYSRYKKLQQELEFLEVQEEYI 61
>PRS6B_HUMAN (P43686) 26S protease regulatory subunit 6B (MIP224)| (MB67-interacting protein) (TAT-binding protein 7) (TBP-7) Length = 418 Score = 39.7 bits (91), Expect = 0.002 Identities = 16/27 (59%), Positives = 22/27 (81%) Frame = +3 Query: 183 EDDDDLYGRLKSLQRHMEFVEIQEEYL 263 ED +DLY R K LQ+ +EF+E+QEEY+ Sbjct: 35 EDLEDLYSRYKKLQQELEFLEVQEEYI 61
>PRS6B_ASPNG (P78578) 26S protease regulatory subunit 6B homolog| Length = 423 Score = 37.4 bits (85), Expect = 0.010 Identities = 14/26 (53%), Positives = 20/26 (76%) Frame = +3 Query: 186 DDDDLYGRLKSLQRHMEFVEIQEEYL 263 D D Y LK LQRH+E++++QEEY+ Sbjct: 37 DGSDEYATLKRLQRHLEYIQLQEEYI 62
>PRS6B_MANSE (P46507) 26S protease regulatory subunit 6B (ATPase MS73)| Length = 415 Score = 36.6 bits (83), Expect = 0.017 Identities = 14/26 (53%), Positives = 21/26 (80%) Frame = +3 Query: 186 DDDDLYGRLKSLQRHMEFVEIQEEYL 263 + +DLY + K LQR +EF+E+QEEY+ Sbjct: 33 ESEDLYTKYKKLQRMLEFLEVQEEYI 58
>PRS6B_DICDI (P34123) 26S protease regulatory subunit 6B homolog (TAT-binding| protein homolog 2) Length = 403 Score = 31.2 bits (69), Expect = 0.73 Identities = 12/23 (52%), Positives = 18/23 (78%) Frame = +3 Query: 195 DLYGRLKSLQRHMEFVEIQEEYL 263 DLY ++KSL+ ++F IQEEY+ Sbjct: 24 DLYQKMKSLESKLDFFNIQEEYI 46
>PRS6B_SCHPO (O74894) 26S protease regulatory subunit 6B homolog| Length = 389 Score = 28.9 bits (63), Expect = 3.6 Identities = 10/26 (38%), Positives = 20/26 (76%) Frame = +3 Query: 186 DDDDLYGRLKSLQRHMEFVEIQEEYL 263 ++ DLY R K+L+R +E +++QE ++ Sbjct: 5 EEIDLYNRWKALERQLEMLDLQEGFI 30 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,780,765 Number of Sequences: 219361 Number of extensions: 125237 Number of successful extensions: 475 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 474 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 475 length of database: 80,573,946 effective HSP length: 63 effective length of database: 66,754,203 effective search space used: 1602100872 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
